Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46757 * 125.33213 * 359.69308 * 13 11 10 15 15 C 1.54175 * 106.57410 * 161.42693 * 14 13 11 16 16 H 1.09000 * 112.67081 * 150.86955 * 15 14 13 17 17 C 1.53676 * 110.12925 * 277.73337 * 15 14 13 18 18 N 1.46661 * 107.97000 * 127.17828 * 17 15 14 19 19 C 1.34779 * 125.33228 * 180.73497 * 18 17 15 20 20 O 1.21273 * 120.00269 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99526 * 179.97438 * 19 18 17 22 22 C 1.50706 * 109.47064 * 179.97438 * 21 19 18 23 23 N 1.34769 * 120.00360 * 179.97438 * 22 21 19 24 24 O 1.21284 * 119.99356 * 359.97438 * 22 21 19 25 25 C 1.47724 * 109.64724 * 0.04685 * 18 17 15 26 26 C 1.53982 * 106.19168 * 342.66452 * 25 18 17 27 27 H 1.09000 * 112.80051 * 150.03976 * 26 25 18 28 28 C 1.46660 * 125.33600 * 180.02562 * 13 11 10 29 29 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 31 31 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 32 32 H 1.09007 * 110.01925 * 280.85735 * 14 13 11 33 33 H 1.08997 * 110.02019 * 42.24738 * 14 13 11 34 34 H 1.09003 * 109.76989 * 246.80339 * 17 15 14 35 35 H 1.08997 * 109.76639 * 7.55287 * 17 15 14 36 36 H 1.08992 * 109.47247 * 299.99392 * 21 19 18 37 37 H 1.08999 * 109.47463 * 59.99763 * 21 19 18 38 38 H 0.97004 * 120.00062 * 0.02562 * 23 22 21 39 39 H 0.96991 * 120.00123 * 179.97438 * 23 22 21 40 40 H 1.09001 * 111.34993 * 222.90976 * 25 18 17 41 41 H 1.09003 * 109.14978 * 101.23393 * 25 18 17 42 42 H 1.09003 * 109.76490 * 300.33653 * 28 13 11 43 43 H 1.09001 * 109.76911 * 61.07521 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 4.3077 -6.2372 -0.0322 15 6 4.8493 -7.6033 0.4344 16 1 5.8286 -7.8326 0.0145 17 6 4.8259 -7.6853 1.9688 18 7 4.1109 -8.9092 2.3456 19 6 3.8751 -9.3166 3.6085 20 8 4.2666 -8.6509 4.5436 21 6 3.1247 -10.5994 3.8586 22 6 2.9964 -10.8251 5.3431 23 7 2.3574 -11.9176 5.8059 24 8 3.4683 -10.0233 6.1213 25 6 3.6721 -9.6227 1.1288 26 6 3.7458 -8.5992 -0.0192 27 1 3.9589 -9.0606 -0.9835 28 6 2.4595 -7.7584 -0.0338 29 1 -0.4849 0.8401 0.0004 30 1 3.1244 -3.7267 -0.9039 31 1 3.1244 -3.7361 0.8761 32 1 4.6619 -6.0165 -1.0392 33 1 4.6279 -5.4552 0.6561 34 1 5.8458 -7.7215 2.3517 35 1 4.3094 -6.8164 2.3766 36 1 2.1319 -10.5322 3.4139 37 1 3.6680 -11.4314 3.4106 38 1 1.9803 -12.5590 5.1835 39 1 2.2751 -12.0630 6.7613 40 1 2.6526 -9.9942 1.2326 41 1 4.3535 -10.4510 0.9347 42 1 1.8625 -7.9828 0.8501 43 1 1.8845 -7.9796 -0.9331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055180830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = -93.741550 kcal Electronic energy + Delta-G solvation = -27162.067942 eV Core-core repulsion = 23140.701516 eV Total energy + Delta-G solvation = -4021.366426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20660 -40.10400 -38.82963 -37.81031 -35.30314 -33.99050 -32.42225 -32.04883 -31.52357 -30.27806 -29.19980 -26.55521 -25.66664 -25.27510 -22.64641 -21.56227 -20.43681 -19.86768 -19.26942 -17.96152 -17.64335 -17.54471 -17.13718 -16.52725 -16.21666 -15.98981 -15.52556 -15.09206 -14.98806 -14.79434 -14.25241 -14.09260 -13.88416 -13.74980 -13.60374 -13.30469 -12.95970 -12.85390 -12.76465 -12.54941 -12.41305 -12.16962 -11.81270 -11.51526 -11.29640 -11.15589 -11.05149 -11.01348 -10.75344 -10.48274 -10.00400 -9.81392 -9.72397 -9.46928 -9.05851 -8.91556 -8.55569 -8.23716 -6.50127 -6.20986 -3.91787 2.27855 2.43661 2.49164 2.87234 3.02078 3.23307 3.24924 3.26770 3.31472 3.59512 3.72807 3.91555 4.08580 4.21173 4.22781 4.51380 4.67562 4.69758 4.70208 4.76017 4.85275 4.98634 5.04893 5.13414 5.14379 5.26666 5.39663 5.48478 5.50834 5.61502 5.66898 5.68272 5.78400 5.89978 5.96988 6.12446 6.39244 6.42761 6.92011 7.15714 7.58505 7.60839 7.88607 8.04703 8.35940 8.51097 9.24349 10.86496 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.002355 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.898494 B =11889.002870 C =12493.615433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.147 4.147 11 C 0.549 3.451 12 O -0.513 6.513 13 N -0.623 5.623 14 C 0.109 3.891 15 C -0.105 4.105 16 H 0.113 0.887 17 C 0.117 3.883 18 N -0.620 5.620 19 C 0.526 3.474 20 O -0.490 6.490 21 C -0.162 4.162 22 C 0.514 3.486 23 N -0.860 5.860 24 O -0.495 6.495 25 C 0.107 3.893 26 C -0.108 4.108 27 H 0.114 0.886 28 C 0.116 3.884 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.399 0.601 39 H 0.403 0.597 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.360 -28.933 0.510 30.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.298 4.298 11 C 0.338 3.662 12 O -0.387 6.387 13 N -0.361 5.361 14 C -0.015 4.015 15 C -0.125 4.125 16 H 0.131 0.869 17 C -0.006 4.006 18 N -0.357 5.357 19 C 0.312 3.688 20 O -0.361 6.361 21 C -0.205 4.205 22 C 0.296 3.704 23 N -0.426 5.426 24 O -0.367 6.367 25 C -0.016 4.016 26 C -0.127 4.127 27 H 0.132 0.868 28 C -0.007 4.007 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.227 0.773 39 H 0.234 0.766 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.935 -28.029 1.511 29.457 hybrid contribution 1.666 0.743 -0.135 1.829 sum 10.601 -27.286 1.376 29.306 Atomic orbital electron populations 1.70022 1.05958 1.27459 1.46848 1.25000 0.95041 0.99048 0.94522 0.86160 0.79443 0.81531 0.78323 1.20267 1.20741 1.19663 1.22851 0.94888 0.91549 1.58971 0.90905 1.85403 1.04917 0.96400 1.96710 1.23513 1.06540 0.94876 1.04822 1.20039 0.85648 0.85435 0.75115 1.90711 1.14935 1.85119 1.47957 1.48220 1.06358 1.05508 1.75972 1.22003 0.80766 0.96825 1.01893 1.22935 0.99590 0.95152 0.94800 0.86870 1.21775 0.97401 0.87818 0.93560 1.48447 1.57207 1.25011 1.05064 1.19586 0.80883 0.86933 0.81389 1.90899 1.49309 1.55168 1.40772 1.21567 1.04077 0.98751 0.96104 1.19981 0.78480 0.81524 0.90394 1.43840 1.61024 1.25885 1.11866 1.90937 1.44881 1.43096 1.57747 1.22225 1.00713 0.94861 0.83823 1.22923 0.95104 0.95544 0.99175 0.86770 1.21725 0.95678 0.80923 1.02403 0.92179 0.89217 0.89263 0.90773 0.90031 0.90926 0.90764 0.85966 0.86066 0.77289 0.76560 0.89968 0.90838 0.91495 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.02 5.19 36.00 0.19 -2.83 16 11 C 0.55 10.51 7.85 -10.99 -0.09 10.42 16 12 O -0.51 -11.88 16.17 5.56 0.09 -11.79 16 13 N -0.62 -8.49 3.31 -172.21 -0.57 -9.06 16 14 C 0.11 1.05 5.83 -3.29 -0.02 1.03 16 15 C -0.11 -0.72 4.05 -88.38 -0.36 -1.08 16 16 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 17 C 0.12 1.12 6.29 -3.60 -0.02 1.09 16 18 N -0.62 -5.58 3.33 -171.55 -0.57 -6.15 16 19 C 0.53 6.02 7.83 -10.98 -0.09 5.93 16 20 O -0.49 -8.44 14.49 -18.95 -0.27 -8.72 16 21 C -0.16 -1.04 5.23 -29.03 -0.15 -1.19 16 22 C 0.51 4.86 8.09 -10.99 -0.09 4.77 16 23 N -0.86 -3.98 8.87 31.22 0.28 -3.70 16 24 O -0.50 -7.86 15.02 -18.96 -0.28 -8.15 16 25 C 0.11 0.53 5.81 -2.86 -0.02 0.52 16 26 C -0.11 -0.64 4.03 -88.48 -0.36 -1.00 16 27 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 28 C 0.12 1.21 6.25 -3.60 -0.02 1.19 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 31 H 0.09 1.73 7.88 -51.92 -0.41 1.32 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.83 7.30 -51.93 -0.38 0.45 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 36 H 0.12 0.47 7.89 -51.93 -0.41 0.06 16 37 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.40 0.35 8.83 -40.82 -0.36 -0.01 16 39 H 0.40 1.74 8.93 -40.82 -0.36 1.38 16 40 H 0.08 0.30 7.33 -51.93 -0.38 -0.08 16 41 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -43.34 371.74 -9.07 -52.41 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -6.01 Total: -3.28 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.82 Total: 5.80 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.13 Total: -44.58 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.47 Total: -28.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -43.34 -9.07 -52.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055180830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.332 kcal (2) G-P(sol) polarization free energy of solvation -43.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds