Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48498 * 109.47335 * 240.00205 * 3 2 1 5 5 H 1.48503 * 109.47383 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46945 * 120.00456 * 3 2 1 7 7 C 1.38794 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00079 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00058 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46917 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00401 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99654 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00139 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47468 * 180.02562 * 14 13 11 16 16 N 1.46494 * 109.47506 * 180.02562 * 15 14 13 17 17 C 1.46501 * 120.00097 * 270.00180 * 16 15 14 18 18 C 1.52997 * 109.46889 * 264.77998 * 17 16 15 19 19 O 1.42902 * 109.47433 * 64.99851 * 18 17 16 20 20 C 1.34774 * 120.00420 * 89.99366 * 16 15 14 21 21 O 1.21634 * 119.99970 * 3.86286 * 20 16 15 22 22 C 1.47266 * 120.00377 * 183.85686 * 20 16 15 23 23 C 1.46690 * 126.94358 * 164.65482 * 22 20 16 24 24 C 1.34480 * 106.33441 * 179.97438 * 23 22 20 25 25 N 1.36450 * 108.85544 * 359.97438 * 24 23 22 26 26 H 0.96998 * 124.85475 * 180.02562 * 25 24 23 27 27 C 1.34655 * 110.29865 * 0.26402 * 25 24 23 28 28 H 0.96998 * 120.00024 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46615 * 60.00266 * 10 9 7 30 30 H 1.09005 * 109.46785 * 300.00027 * 10 9 7 31 31 H 0.96998 * 120.00179 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.46882 * 59.99993 * 14 13 11 33 33 H 1.08998 * 109.47021 * 300.00657 * 14 13 11 34 34 H 1.08999 * 109.47183 * 59.99464 * 15 14 13 35 35 H 1.09010 * 109.47045 * 299.99923 * 15 14 13 36 36 H 1.08999 * 109.46781 * 24.77639 * 17 16 15 37 37 H 1.09001 * 109.47720 * 144.77587 * 17 16 15 38 38 H 1.09002 * 109.46832 * 184.99822 * 18 17 16 39 39 H 1.08995 * 109.47126 * 304.99430 * 18 17 16 40 40 H 0.96703 * 114.00148 * 180.02562 * 19 18 17 41 41 H 1.07995 * 126.83195 * 0.02562 * 23 22 20 42 42 H 1.07996 * 125.57706 * 179.97438 * 24 23 22 43 43 H 1.08004 * 125.80680 * 179.73494 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3026 -0.0030 12 8 0.7911 -5.5023 -0.0030 13 7 2.8442 -6.3430 -0.0048 14 6 2.3306 -7.7150 -0.0062 15 6 3.5026 -8.6984 -0.0074 16 7 2.9889 -10.0704 -0.0094 17 6 2.7319 -10.7582 1.2583 18 6 3.9479 -11.6076 1.6333 19 8 5.0656 -10.7539 1.8862 20 6 2.7527 -10.6999 -1.1774 21 8 3.0317 -10.1557 -2.2289 22 6 2.1569 -12.0466 -1.1809 23 6 1.5519 -12.7401 -2.3231 24 6 1.1434 -13.9370 -1.8658 25 7 1.4500 -14.0303 -0.5395 26 1 1.2583 -14.7984 0.0211 27 6 2.0520 -12.9018 -0.1187 28 1 -0.4850 0.8400 0.0004 29 1 3.1251 -3.7317 0.8875 30 1 3.1238 -3.7308 -0.8926 31 1 3.8010 -6.1834 -0.0058 32 1 1.7215 -7.8740 -0.8960 33 1 1.7224 -7.8762 0.8839 34 1 4.1114 -8.5393 0.8826 35 1 4.1111 -8.5374 -0.8974 36 1 2.5480 -10.0216 2.0405 37 1 1.8582 -11.4013 1.1523 38 1 3.7237 -12.1876 2.5286 39 1 4.1857 -12.2840 0.8124 40 1 5.8738 -11.2258 2.1299 41 1 1.4547 -12.3646 -3.3310 42 1 0.6529 -14.6997 -2.4524 43 1 2.3959 -12.7060 0.8863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001057842465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = -46.235697 kcal Electronic energy + Delta-G solvation = -26429.258006 eV Core-core repulsion = 22409.951588 eV Total energy + Delta-G solvation = -4019.306418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75253 -39.78737 -38.90222 -37.58908 -35.80344 -34.43087 -32.37296 -31.79337 -31.04842 -29.64292 -29.13728 -27.61365 -25.42890 -23.98366 -23.44714 -21.86175 -21.03746 -20.35251 -19.94378 -18.34541 -17.83670 -17.77220 -16.66785 -16.64321 -16.21225 -15.57076 -15.37587 -15.22251 -15.00067 -14.75072 -14.40535 -14.31647 -14.01690 -13.83492 -13.76193 -13.46422 -13.14160 -13.04942 -12.70156 -12.49187 -12.34624 -12.06984 -11.95171 -11.80992 -11.20242 -10.98918 -10.98776 -10.72378 -10.60302 -10.08047 -9.77085 -9.35152 -9.24523 -9.00776 -8.91329 -8.79518 -8.77774 -8.16947 -6.43400 -6.15827 -3.85955 1.37037 2.07807 2.51961 2.82866 3.18324 3.20694 3.25661 3.28010 3.32175 3.40436 3.64157 3.90145 4.26139 4.27115 4.35719 4.51647 4.62876 4.69367 4.77445 4.86598 4.93849 4.98403 5.12477 5.19003 5.22410 5.30454 5.45278 5.50274 5.64135 5.71888 5.86067 5.98394 5.99169 6.21863 6.23266 6.35250 6.47599 6.72158 6.95486 7.07845 7.20779 7.64953 7.80742 8.09444 8.40854 8.71735 9.29169 10.91566 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.001879 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.163741 B =14898.334097 C =15526.755164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.108 3.892 15 C 0.112 3.888 16 N -0.599 5.599 17 C 0.087 3.913 18 C 0.046 3.954 19 O -0.562 6.562 20 C 0.586 3.414 21 O -0.534 6.534 22 C -0.222 4.222 23 C -0.140 4.140 24 C -0.020 4.020 25 N -0.552 5.552 26 H 0.417 0.583 27 C 0.014 3.986 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.380 0.620 41 H 0.149 0.851 42 H 0.171 0.829 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.872 -34.521 4.618 35.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.390 5.390 14 C -0.018 4.018 15 C -0.011 4.011 16 N -0.331 5.331 17 C -0.037 4.037 18 C -0.033 4.033 19 O -0.368 6.368 20 C 0.377 3.623 21 O -0.411 6.411 22 C -0.233 4.233 23 C -0.165 4.165 24 C -0.148 4.148 25 N -0.147 5.147 26 H 0.253 0.747 27 C -0.121 4.121 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.227 0.773 41 H 0.167 0.833 42 H 0.188 0.812 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.359 -34.108 3.945 34.919 hybrid contribution 2.694 0.447 0.485 2.774 sum 9.053 -33.661 4.430 35.138 Atomic orbital electron populations 1.70013 1.05942 1.27497 1.46901 1.24993 0.95032 0.99008 0.94603 0.86223 0.79217 0.81254 0.78783 1.19938 1.20852 1.19969 1.22837 0.94902 0.91697 1.58884 0.90960 1.85395 1.05037 0.96266 1.96713 1.23526 1.06507 0.95296 1.04981 1.20291 0.86493 0.86217 0.75141 1.90700 1.15402 1.85589 1.47532 1.45824 1.09997 1.05241 1.77978 1.21587 0.96622 0.81023 1.02578 1.21558 0.95481 0.79647 1.04457 1.47446 1.66129 1.14237 1.05308 1.22225 0.96443 0.98072 0.86939 1.22908 0.88093 0.92995 0.99261 1.86529 1.21495 1.36648 1.92084 1.17521 0.77329 0.84388 0.83089 1.90804 1.51929 1.67409 1.30927 1.20475 1.11967 0.95914 0.94924 1.22006 1.02296 0.93527 0.98624 1.21867 1.07965 1.00541 0.84381 1.41714 1.47168 1.15627 1.10171 0.74660 1.23091 1.01777 0.87457 0.99821 0.92177 0.89178 0.89138 0.76776 0.91384 0.91779 0.89102 0.89203 0.88729 0.87373 0.92451 0.92733 0.77270 0.83312 0.81177 0.79452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.72 13.22 55.49 0.73 -25.98 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.85 29.55 -169.99 -5.02 16.82 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -15.62 9.50 30.94 0.29 -15.32 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.15 -3.23 6.16 36.00 0.22 -3.00 16 11 C 0.53 10.69 7.85 -10.99 -0.09 10.61 16 12 O -0.52 -12.58 15.86 5.55 0.09 -12.49 16 13 N -0.74 -10.96 5.56 -60.30 -0.33 -11.29 16 14 C 0.11 1.49 6.00 -4.04 -0.02 1.47 16 15 C 0.11 1.23 5.45 -4.05 -0.02 1.21 16 16 N -0.60 -6.08 2.43 -175.02 -0.43 -6.50 16 17 C 0.09 0.54 5.29 -4.04 -0.02 0.52 16 18 C 0.05 0.20 5.81 37.16 0.22 0.42 16 19 O -0.56 -3.39 13.07 -35.23 -0.46 -3.85 16 20 C 0.59 7.44 7.63 -12.59 -0.10 7.35 16 21 O -0.53 -9.03 16.56 5.25 0.09 -8.94 16 22 C -0.22 -2.20 6.08 -103.35 -0.63 -2.82 16 23 C -0.14 -1.30 11.00 -37.50 -0.41 -1.72 16 24 C -0.02 -0.11 11.89 -16.83 -0.20 -0.31 16 25 N -0.55 -2.17 5.90 -12.85 -0.08 -2.25 16 26 H 0.42 0.12 8.96 -40.82 -0.37 -0.24 16 27 C 0.01 0.08 8.69 -16.84 -0.15 -0.07 16 28 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 30 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 31 H 0.40 4.64 8.47 -40.82 -0.35 4.29 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.87 7.62 -51.93 -0.40 0.47 16 35 H 0.09 1.11 7.37 -51.92 -0.38 0.72 16 36 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 37 H 0.11 0.50 4.71 -51.93 -0.24 0.26 16 38 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.05 0.25 6.69 -51.93 -0.35 -0.10 16 40 H 0.38 0.77 9.12 45.56 0.42 1.19 16 41 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.19 0.53 3.34 -52.48 -0.18 0.36 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -42.15 378.13 -7.69 -49.84 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.76 Total: 2.51 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.00 Total: 0.35 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.10 Total: -46.02 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.29 Total: -25.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -42.15 -7.69 -49.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001057842465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.608 kcal (2) G-P(sol) polarization free energy of solvation -42.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds