Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35314 * 126.66530 * 2 1 4 4 C 1.42274 * 103.92028 * 179.97438 * 3 2 1 5 5 C 1.48327 * 126.94024 * 179.97438 * 4 3 2 6 6 O 1.21494 * 119.99885 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00095 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99859 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46975 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46654 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47009 * 304.99085 * 10 9 8 12 12 C 1.53008 * 109.46508 * 184.99930 * 10 9 8 13 13 N 1.46497 * 109.47201 * 64.99997 * 10 9 8 14 14 C 1.34777 * 119.99525 * 204.99403 * 13 10 9 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 10 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 10 17 17 S 1.80997 * 109.47151 * 180.27780 * 16 14 13 18 18 C 1.76196 * 100.00314 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00626 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99674 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00584 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47157 * 59.99781 * 22 20 18 24 24 H 1.48496 * 109.47271 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46802 * 300.00045 * 22 20 18 26 26 N 1.30988 * 106.12273 * 0.26075 * 4 3 2 27 27 O 1.20911 * 111.44170 * 359.53724 * 26 4 3 28 28 H 1.08996 * 109.47012 * 89.99886 * 1 2 3 29 29 H 1.08997 * 109.47146 * 210.00279 * 1 2 3 30 30 H 1.09000 * 109.46743 * 329.99756 * 1 2 3 31 31 H 1.07993 * 128.04154 * 359.95619 * 3 2 1 32 32 H 0.97001 * 120.00395 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47046 * 60.00177 * 8 7 5 34 34 H 1.09001 * 109.47502 * 299.99905 * 8 7 5 35 35 H 1.09000 * 109.47254 * 60.00103 * 9 8 7 36 36 H 1.09001 * 109.46763 * 300.00156 * 9 8 7 37 37 H 1.08994 * 109.47201 * 299.99808 * 12 10 9 38 38 H 1.08995 * 109.47273 * 60.00263 * 12 10 9 39 39 H 1.08998 * 109.46811 * 179.97438 * 12 10 9 40 40 H 0.97000 * 120.00580 * 25.00149 * 13 10 9 41 41 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 42 42 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 43 43 H 0.97003 * 120.00297 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5353 0.0006 5 6 4.9076 1.2840 0.0003 6 8 4.9009 2.4989 0.0000 7 7 6.0785 0.6166 0.0005 8 6 7.3432 1.3561 -0.0003 9 6 8.5116 0.3683 -0.0006 10 6 9.8324 1.1407 -0.0008 11 1 9.8483 1.8328 -0.8427 12 6 10.9980 0.1575 -0.1268 13 7 9.9595 1.8910 1.2509 14 6 10.7284 2.9969 1.2985 15 8 11.3148 3.3711 0.3050 16 6 10.8543 3.7723 2.5846 17 16 11.9401 5.1972 2.3262 18 6 11.9087 5.9025 3.9405 19 1 11.3268 5.4368 4.7221 20 6 12.6327 7.0561 4.2081 21 7 13.3432 7.6229 3.2560 22 14 12.6001 7.8035 5.9198 23 1 13.1209 6.8175 6.9004 24 1 13.4494 9.0213 5.9444 25 1 11.2045 8.1653 6.2753 26 7 3.4761 -0.7658 -0.0048 27 8 2.3073 -1.0751 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 2.0302 2.1271 -0.0007 32 1 6.0839 -0.3534 0.0004 33 1 7.3977 1.9837 0.8892 34 1 7.3973 1.9825 -0.8908 35 1 8.4569 -0.2590 -0.8904 36 1 8.4577 -0.2584 0.8896 37 1 10.9820 -0.5347 0.7149 38 1 10.9034 -0.4007 -1.0582 39 1 11.9389 0.7078 -0.1275 40 1 9.4904 1.5919 2.0455 41 1 9.8693 4.1182 2.8982 42 1 11.2764 3.1292 3.3568 43 1 13.8490 8.4293 3.4428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075531904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -23.804775 kcal Electronic energy + Delta-G solvation = -25700.335511 eV Core-core repulsion = 21682.001771 eV Total energy + Delta-G solvation = -4018.333740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.55538 -40.06559 -39.36427 -36.69921 -34.83663 -34.62828 -33.78857 -32.40745 -31.82544 -29.56016 -28.47528 -28.37383 -25.58979 -25.44878 -23.48284 -22.85120 -21.63852 -20.45173 -20.28951 -18.32084 -18.11675 -17.81943 -17.24080 -16.62237 -16.38820 -15.94768 -15.58922 -15.00215 -14.78548 -14.74551 -14.34862 -14.25004 -14.07537 -13.87823 -13.79001 -13.62146 -13.23127 -13.04252 -12.90611 -12.63878 -12.16655 -12.00009 -11.93374 -11.83915 -11.56447 -11.12325 -11.02329 -11.01840 -10.93222 -10.75075 -10.63910 -9.93787 -9.80427 -9.53301 -9.37577 -9.04425 -8.91762 -8.21867 -6.47525 -6.19400 -3.89806 0.63472 1.18935 2.37973 2.55855 2.76480 3.04201 3.10774 3.25226 3.29007 3.32642 3.48285 3.72155 3.98850 4.22656 4.39639 4.43033 4.59251 4.63607 4.70376 4.78582 4.80655 5.02658 5.15558 5.16155 5.20107 5.20973 5.29476 5.32560 5.44641 5.52954 5.59160 5.66081 5.69951 5.91063 5.93244 5.99638 6.15542 6.17519 6.64988 6.93282 7.49150 7.61353 7.68887 7.70830 8.37145 8.62525 9.25763 10.87958 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013569 B = 0.001886 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.051234 B =14839.495755 C =16416.687488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.031 4.031 3 C -0.185 4.185 4 C -0.023 4.023 5 C 0.596 3.404 6 O -0.513 6.513 7 N -0.715 5.715 8 C 0.116 3.884 9 C -0.138 4.138 10 C 0.147 3.853 11 H 0.092 0.908 12 C -0.163 4.163 13 N -0.736 5.736 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.334 5.334 27 O 0.120 5.880 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.182 0.818 32 H 0.406 0.594 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.542 -21.891 -6.944 33.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 C -0.207 4.207 4 C -0.182 4.182 5 C 0.379 3.621 6 O -0.387 6.387 7 N -0.367 5.367 8 C -0.007 4.007 9 C -0.176 4.176 10 C 0.042 3.958 11 H 0.110 0.890 12 C -0.221 4.221 13 N -0.391 5.391 14 C 0.320 3.680 15 O -0.390 6.390 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 N -0.036 5.036 27 O 0.045 5.955 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.199 0.801 32 H 0.241 0.759 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.489 -21.190 -8.679 32.095 hybrid contribution -1.227 0.153 2.679 2.951 sum -23.716 -21.036 -6.000 32.264 Atomic orbital electron populations 1.20404 0.83206 1.05104 1.04512 1.24541 0.96632 0.85298 1.02943 1.22487 0.89654 1.01737 1.06829 1.23517 0.96847 0.90189 1.07623 1.16873 0.81606 0.86414 0.77204 1.90865 1.86623 1.12395 1.48777 1.45857 1.05476 1.10816 1.74559 1.21543 0.80703 0.94623 1.03838 1.22120 0.93332 0.98257 1.03917 1.20770 0.92979 0.93448 0.88645 0.88966 1.22171 0.99237 0.99052 1.01649 1.46137 1.51636 1.28401 1.12954 1.20299 0.77776 0.79618 0.90291 1.90700 1.44596 1.67391 1.36300 1.23542 1.06194 1.03491 0.97288 1.85376 1.58289 1.22775 1.16820 1.22831 1.35135 1.14021 0.96451 0.91005 1.24987 0.94543 0.95872 0.98158 1.70009 1.28237 1.19638 1.32407 0.86227 0.78274 0.78417 0.82606 1.19970 1.20809 1.19934 1.74153 0.97451 1.15514 1.16468 1.84770 1.11087 1.33519 1.66116 0.89027 0.89470 0.88591 0.80057 0.75905 0.90346 0.90533 0.89581 0.90472 0.92506 0.91846 0.91369 0.76915 0.89232 0.89279 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.12 10.45 36.01 0.38 0.26 16 2 C -0.03 -0.18 7.47 -35.35 -0.26 -0.44 16 3 C -0.18 -1.46 10.92 -39.07 -0.43 -1.88 16 4 C -0.02 -0.23 7.19 -82.53 -0.59 -0.82 16 5 C 0.60 7.00 7.85 -12.11 -0.10 6.90 16 6 O -0.51 -7.85 16.95 5.37 0.09 -7.76 16 7 N -0.71 -6.58 5.55 -61.09 -0.34 -6.92 16 8 C 0.12 1.11 5.56 -4.04 -0.02 1.09 16 9 C -0.14 -1.01 4.87 -26.73 -0.13 -1.14 16 10 C 0.15 1.57 2.57 -67.93 -0.17 1.40 16 11 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 12 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 13 N -0.74 -9.39 4.53 -53.80 -0.24 -9.63 16 14 C 0.53 9.83 7.81 -10.98 -0.09 9.75 16 15 O -0.52 -11.56 15.52 5.55 0.09 -11.47 16 16 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 22 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 N -0.33 -3.10 11.84 33.30 0.39 -2.70 16 27 O 0.12 0.92 11.18 17.23 0.19 1.11 16 28 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 30 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 31 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.41 2.89 8.23 -40.82 -0.34 2.56 16 33 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 41 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -37.74 391.47 -7.17 -44.91 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.10 Total: 1.69 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -0.64 Total: -2.24 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.54 Total: -44.95 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.37 Total: -18.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.74 -7.17 -44.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075531904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.104 kcal (2) G-P(sol) polarization free energy of solvation -37.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds