Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41257 * 126.70228 * 2 1 4 4 C 1.36823 * 103.84601 * 180.12775 * 3 2 1 5 5 C 1.47514 * 126.94658 * 179.90645 * 4 3 2 6 6 O 1.21585 * 120.00071 * 359.70899 * 5 4 3 7 7 N 1.34773 * 120.00052 * 179.70854 * 5 4 3 8 8 C 1.46505 * 119.99859 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46975 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46654 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47009 * 304.99085 * 10 9 8 12 12 C 1.53008 * 109.46508 * 184.99930 * 10 9 8 13 13 N 1.46497 * 109.47201 * 64.99997 * 10 9 8 14 14 C 1.34777 * 119.99525 * 204.99403 * 13 10 9 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 10 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 10 17 17 S 1.80997 * 109.47151 * 180.27780 * 16 14 13 18 18 C 1.76196 * 100.00314 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00626 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00336 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99494 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47141 * 90.00156 * 22 20 18 24 24 H 1.48505 * 109.47177 * 209.99950 * 22 20 18 25 25 H 1.48496 * 109.47259 * 329.99923 * 22 20 18 26 26 O 1.34647 * 106.11023 * 359.64456 * 4 3 2 27 27 N 1.20876 * 111.46741 * 0.24028 * 26 4 3 28 28 H 1.09004 * 109.47058 * 270.25117 * 1 2 3 29 29 H 1.08994 * 109.47173 * 30.25614 * 1 2 3 30 30 H 1.08997 * 109.46930 * 150.25791 * 1 2 3 31 31 H 1.08006 * 128.08034 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00395 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47046 * 60.00177 * 8 7 5 34 34 H 1.09001 * 109.47502 * 299.99905 * 8 7 5 35 35 H 1.09000 * 109.47254 * 60.00103 * 9 8 7 36 36 H 1.09001 * 109.46763 * 300.00156 * 9 8 7 37 37 H 1.08994 * 109.47201 * 299.99808 * 12 10 9 38 38 H 1.08995 * 109.47273 * 60.00263 * 12 10 9 39 39 H 1.08998 * 109.46811 * 179.97438 * 12 10 9 40 40 H 0.97000 * 120.00580 * 25.00149 * 13 10 9 41 41 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 42 42 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 43 43 H 0.97003 * 119.99714 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6011 -0.0030 5 6 4.8870 1.3430 -0.0062 6 8 4.8829 2.5589 -0.0117 7 7 6.0565 0.6732 -0.0030 8 6 7.3227 1.4102 -0.0067 9 6 8.4891 0.4199 -0.0026 10 6 9.8114 1.1896 -0.0058 11 1 9.8290 1.8781 -0.8507 12 6 10.9751 0.2035 -0.1274 13 7 9.9399 1.9450 1.2427 14 6 10.7111 3.0495 1.2857 15 8 11.2984 3.4183 0.2907 16 6 10.8383 3.8301 2.5685 17 16 11.9270 5.2517 2.3042 18 6 11.8969 5.9640 3.9155 19 1 11.3138 5.5028 4.6990 20 6 12.6232 7.1172 4.1783 21 7 12.6010 7.6490 5.3822 22 14 13.6322 7.9145 2.8234 23 1 12.7948 8.9047 2.1000 24 1 14.8066 8.6008 3.4194 25 1 14.0975 6.8719 1.8739 26 8 3.4539 -0.7360 0.0036 27 7 2.2849 -1.0432 0.0051 28 1 -0.3633 0.0045 1.0277 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 2.0678 2.1747 0.0004 32 1 6.0599 -0.2968 0.0011 33 1 7.3784 2.0414 0.8802 34 1 7.3783 2.0326 -0.8998 35 1 8.4333 -0.2110 -0.8897 36 1 8.4338 -0.2029 0.8903 37 1 10.9576 -0.4851 0.7173 38 1 10.8795 -0.3585 -1.0564 39 1 11.9171 0.7518 -0.1302 40 1 9.4700 1.6503 2.0385 41 1 9.8540 4.1794 2.8805 42 1 11.2590 3.1895 3.3436 43 1 13.1084 8.4552 5.5657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075584328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = -23.408211 kcal Electronic energy + Delta-G solvation = -25777.926246 eV Core-core repulsion = 21759.609702 eV Total energy + Delta-G solvation = -4018.316544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.51299 -40.19465 -39.50150 -36.83424 -35.50076 -34.82943 -32.70758 -32.43048 -31.87573 -29.62262 -29.20620 -28.60369 -25.60781 -25.20498 -23.51597 -22.90471 -21.75232 -20.58110 -20.41427 -18.87189 -18.30751 -17.85132 -16.77276 -16.64883 -16.62999 -16.06431 -15.68179 -15.14319 -14.95742 -14.81049 -14.38594 -14.23922 -13.93638 -13.77361 -13.71560 -13.66720 -13.41020 -13.29570 -13.02983 -12.78708 -12.32070 -12.08021 -11.96239 -11.91686 -11.65242 -11.25777 -11.20701 -10.99846 -10.78576 -10.62724 -10.58932 -10.24466 -9.84987 -9.64150 -9.52284 -9.05562 -8.98106 -8.49422 -6.90790 -6.27988 -3.99647 0.30575 1.52471 2.07999 2.51734 2.69669 2.76217 2.96002 3.29699 3.34882 3.51152 3.53809 3.65111 3.92544 4.30290 4.33987 4.38823 4.51441 4.56692 4.62213 4.75867 4.81537 4.92949 5.07980 5.11004 5.12381 5.17503 5.19138 5.23906 5.31270 5.45648 5.50637 5.55403 5.59025 5.76946 5.79687 5.89497 6.01998 6.08991 6.53548 6.78323 7.44867 7.57855 7.60177 7.95021 8.42604 8.47725 9.18228 10.81231 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015675 B = 0.001892 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.899824 B =14791.974866 C =16062.826939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 C -0.149 4.149 4 C -0.084 4.084 5 C 0.603 3.397 6 O -0.503 6.503 7 N -0.715 5.715 8 C 0.115 3.885 9 C -0.139 4.139 10 C 0.147 3.853 11 H 0.092 0.908 12 C -0.163 4.163 13 N -0.735 5.735 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.125 4.125 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 O 0.116 5.884 27 N -0.345 5.345 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.185 0.815 32 H 0.407 0.593 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.410 -21.375 -11.860 31.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C -0.171 4.171 4 C -0.150 4.150 5 C 0.386 3.614 6 O -0.378 6.378 7 N -0.366 5.366 8 C -0.008 4.008 9 C -0.177 4.177 10 C 0.042 3.958 11 H 0.111 0.889 12 C -0.222 4.222 13 N -0.389 5.389 14 C 0.319 3.681 15 O -0.392 6.392 16 C -0.276 4.276 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 O 0.043 5.957 27 N -0.047 5.047 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.202 0.798 32 H 0.242 0.758 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.581 -21.017 -13.402 31.698 hybrid contribution -0.555 0.275 1.307 1.446 sum -20.136 -20.741 -12.095 31.336 Atomic orbital electron populations 1.20235 0.85100 1.04268 1.03889 1.23699 0.99527 0.88222 1.03209 1.22925 0.89947 1.01916 1.02316 1.24243 0.97370 0.84035 1.09323 1.16510 0.81074 0.86216 0.77588 1.90943 1.85947 1.11780 1.49122 1.45881 1.05528 1.10887 1.74333 1.21573 0.80553 0.94686 1.03981 1.22130 0.93203 0.98270 1.04123 1.20785 0.93106 0.93379 0.88565 0.88946 1.22173 0.99163 0.99046 1.01775 1.46102 1.51334 1.28270 1.13236 1.20272 0.77899 0.79778 0.90162 1.90700 1.44727 1.67693 1.36079 1.23290 1.05354 1.01365 0.97582 1.84777 1.60369 1.27276 1.19094 1.22319 1.35675 1.14280 0.94639 0.89401 1.24715 0.95399 0.95601 0.95602 1.69940 1.40765 1.20938 1.20047 0.86733 0.80673 0.81603 0.82824 1.19198 1.19964 1.15935 1.84963 1.21567 1.22083 1.67099 1.73736 0.89219 1.24293 1.17434 0.89714 0.89532 0.90185 0.79769 0.75752 0.90193 0.90395 0.89409 0.90280 0.92403 0.91771 0.91441 0.76716 0.88491 0.88500 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.47 36.01 0.38 0.06 16 2 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 3 C -0.15 -1.14 10.91 -38.95 -0.43 -1.57 16 4 C -0.08 -0.70 7.29 -36.31 -0.26 -0.97 16 5 C 0.60 5.73 7.82 -12.48 -0.10 5.63 16 6 O -0.50 -6.70 16.91 5.29 0.09 -6.61 16 7 N -0.71 -4.83 5.55 -61.35 -0.34 -5.17 16 8 C 0.11 0.87 5.56 -4.04 -0.02 0.85 16 9 C -0.14 -0.77 4.87 -26.73 -0.13 -0.90 16 10 C 0.15 1.34 2.57 -67.93 -0.17 1.17 16 11 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 12 C -0.16 -1.43 9.48 37.16 0.35 -1.07 16 13 N -0.73 -8.22 4.53 -53.80 -0.24 -8.46 16 14 C 0.53 8.93 7.81 -10.98 -0.09 8.85 16 15 O -0.52 -10.65 15.52 5.55 0.09 -10.57 16 16 C -0.13 -2.37 6.16 36.01 0.22 -2.14 16 17 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 18 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 19 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 22 Si 0.86 21.84 27.74 -169.99 -4.72 17.12 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 26 O 0.12 0.95 11.04 15.54 0.17 1.13 16 27 N -0.35 -3.11 12.04 33.52 0.40 -2.70 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.18 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.41 1.66 8.30 -40.82 -0.34 1.32 16 33 H 0.08 0.73 7.75 -51.93 -0.40 0.33 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.40 3.41 8.60 -40.82 -0.35 3.06 16 41 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 42 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -36.88 388.81 -6.68 -43.56 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.14 Total: -0.11 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.64 Total: -2.64 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.59 Total: -42.18 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.35 Total: -16.05 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.12 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.88 -6.68 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075584328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.151 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds