Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41263 * 126.70199 * 2 1 4 4 C 1.36822 * 103.84666 * 180.02562 * 3 2 1 5 5 C 1.47513 * 126.94665 * 179.97438 * 4 3 2 6 6 O 1.21578 * 119.99667 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00021 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99910 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.47452 * 324.99846 * 8 7 5 10 10 C 1.53006 * 109.46998 * 84.99768 * 8 7 5 11 11 C 1.52997 * 109.47007 * 204.99627 * 8 7 5 12 12 C 1.53001 * 109.47328 * 65.00131 * 11 8 7 13 13 N 1.46496 * 109.47207 * 179.97438 * 12 11 8 14 14 C 1.34779 * 119.99955 * 179.97438 * 13 12 11 15 15 O 1.21285 * 119.99808 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00119 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.47046 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00146 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99829 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00338 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99676 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00082 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46897 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46902 * 120.00043 * 22 20 18 25 25 H 1.48494 * 109.46920 * 240.00424 * 22 20 18 26 26 O 1.34648 * 106.10771 * 0.24057 * 4 3 2 27 27 N 1.20885 * 111.46961 * 359.56623 * 26 4 3 28 28 H 1.08999 * 109.46965 * 90.00040 * 1 2 3 29 29 H 1.08996 * 109.47104 * 209.99944 * 1 2 3 30 30 H 1.09002 * 109.46892 * 330.00024 * 1 2 3 31 31 H 1.07998 * 128.07799 * 0.03791 * 3 2 1 32 32 H 0.97003 * 120.00095 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.46998 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.47050 * 299.99945 * 10 8 7 35 35 H 1.09001 * 109.46801 * 60.00058 * 10 8 7 36 36 H 1.09002 * 109.47196 * 184.99891 * 11 8 7 37 37 H 1.09001 * 109.47630 * 304.99986 * 11 8 7 38 38 H 1.09002 * 109.46786 * 300.00010 * 12 11 8 39 39 H 1.09001 * 109.46883 * 59.99398 * 12 11 8 40 40 H 0.96999 * 120.00300 * 0.02562 * 13 12 11 41 41 H 1.09001 * 109.46582 * 299.99539 * 16 14 13 42 42 H 1.08993 * 109.47443 * 59.99924 * 16 14 13 43 43 H 0.97001 * 119.99590 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6012 -0.0006 5 6 4.8871 1.3431 -0.0014 6 8 4.8828 2.5589 -0.0011 7 7 6.0566 0.6733 -0.0024 8 6 7.3227 1.4102 -0.0026 9 1 7.2131 2.3209 -0.5914 10 6 7.7010 1.7746 1.4345 11 6 8.4208 0.5372 -0.6133 12 6 8.1042 0.2761 -2.0873 13 7 9.1559 -0.5593 -2.6721 14 6 9.0870 -0.9199 -3.9689 15 8 8.1540 -0.5531 -4.6516 16 6 10.1685 -1.7798 -4.5705 17 16 9.7940 -2.0884 -6.3142 18 6 11.1789 -3.0856 -6.7528 19 1 11.9298 -3.3222 -6.0134 20 6 11.3050 -3.5669 -8.0486 21 7 10.3896 -3.2789 -8.9496 22 14 12.7736 -4.6234 -8.5137 23 1 13.6512 -4.8004 -7.3288 24 1 12.3001 -5.9510 -8.9811 25 1 13.5368 -3.9592 -9.6006 26 8 3.4539 -0.7360 -0.0063 27 7 2.2848 -1.0432 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.0678 2.1747 0.0006 32 1 6.0599 -0.2967 -0.0023 33 1 8.6433 2.3224 1.4343 34 1 6.9187 2.3965 1.8695 35 1 7.8107 0.8638 2.0233 36 1 9.3794 1.0498 -0.5329 37 1 8.4702 -0.4115 -0.0788 38 1 7.1456 -0.2365 -2.1677 39 1 8.0548 1.2248 -2.6218 40 1 9.9015 -0.8536 -2.1259 41 1 11.1270 -1.2669 -4.4904 42 1 10.2181 -2.7282 -4.0357 43 1 10.4779 -3.6151 -9.8552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = -24.055293 kcal Electronic energy + Delta-G solvation = -25858.643362 eV Core-core repulsion = 21840.298758 eV Total energy + Delta-G solvation = -4018.344603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.41099 -40.33454 -39.17069 -37.03937 -35.33615 -34.51346 -32.89033 -32.43447 -31.59507 -30.10541 -29.14054 -28.17992 -25.50836 -25.01071 -23.47708 -23.18435 -21.46886 -20.66523 -20.32287 -18.77668 -18.19607 -17.84623 -16.95736 -16.60737 -16.20215 -16.03940 -15.45532 -15.27161 -14.85827 -14.81086 -14.39512 -14.01709 -13.98926 -13.84626 -13.81349 -13.61108 -13.26738 -13.21792 -12.99665 -12.61751 -12.46333 -12.21635 -11.81553 -11.73119 -11.58945 -11.35353 -11.07603 -11.02599 -10.76469 -10.74700 -10.53275 -10.15794 -9.81605 -9.67154 -9.41375 -9.08567 -8.92263 -8.23710 -6.50728 -6.22391 -3.92972 0.38626 1.62378 2.15726 2.56048 2.75908 3.00297 3.08246 3.21103 3.27386 3.31768 3.63615 3.66339 4.00186 4.19621 4.35109 4.42459 4.51946 4.60497 4.65964 4.88422 4.98065 5.00611 5.02341 5.12865 5.16153 5.18871 5.24629 5.26357 5.27457 5.49919 5.59166 5.60751 5.65263 5.76637 5.87630 5.88323 5.95416 6.12436 6.56681 6.83233 7.49064 7.59150 7.67098 7.69590 8.34731 8.59337 9.23026 10.85093 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014418 B = 0.001909 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.523932 B =14664.744545 C =16072.883337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.009 3.991 3 C -0.149 4.149 4 C -0.086 4.086 5 C 0.610 3.390 6 O -0.510 6.510 7 N -0.710 5.710 8 C 0.145 3.855 9 H 0.099 0.901 10 C -0.164 4.164 11 C -0.140 4.140 12 C 0.119 3.881 13 N -0.740 5.740 14 C 0.531 3.469 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 O 0.119 5.881 27 N -0.342 5.342 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.184 0.816 32 H 0.409 0.591 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 9.223 25.574 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C -0.171 4.171 4 C -0.152 4.152 5 C 0.393 3.607 6 O -0.385 6.385 7 N -0.362 5.362 8 C 0.041 3.959 9 H 0.117 0.883 10 C -0.222 4.222 11 C -0.179 4.179 12 C -0.005 4.005 13 N -0.395 5.395 14 C 0.317 3.683 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 O 0.046 5.954 27 N -0.043 5.043 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.201 0.799 32 H 0.245 0.755 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.717 9.404 24.237 29.394 hybrid contribution 2.286 -0.954 0.703 2.575 sum -11.431 8.450 24.940 28.706 Atomic orbital electron populations 1.20228 0.85135 1.04151 1.03938 1.23698 0.99530 0.88230 1.03380 1.22883 0.89936 1.01797 1.02490 1.24213 0.97326 0.84187 1.09440 1.16476 0.81094 0.86162 0.76950 1.90885 1.86080 1.11802 1.49771 1.46023 1.05233 1.10992 1.73923 1.21032 0.81451 0.95856 0.97566 0.88346 1.22184 1.02396 1.02157 0.95459 1.22143 0.99173 1.01110 0.95436 1.21275 0.91596 0.95681 0.91984 1.45982 1.27060 1.54846 1.11621 1.20329 0.87045 0.79952 0.81009 1.90714 1.34172 1.53962 1.60170 1.23527 0.99739 1.01178 1.05945 1.85427 1.33768 1.66781 0.97488 1.22909 1.09662 1.36773 0.98981 0.90860 1.25005 0.97115 0.96211 0.95332 1.70031 1.33371 1.43234 1.03620 0.86108 0.81235 0.79577 0.78521 1.19617 1.20570 1.20561 1.84991 1.21564 1.22005 1.66889 1.73761 0.89198 1.24267 1.17058 0.89672 0.90189 0.89645 0.79870 0.75536 0.90975 0.91762 0.92069 0.89025 0.90239 0.91598 0.91433 0.76802 0.89209 0.89210 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.47 36.01 0.38 -0.02 16 2 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 3 C -0.15 -1.25 10.91 -38.95 -0.43 -1.68 16 4 C -0.09 -0.80 7.29 -36.32 -0.26 -1.07 16 5 C 0.61 5.84 7.78 -12.48 -0.10 5.74 16 6 O -0.51 -6.21 16.58 5.30 0.09 -6.13 16 7 N -0.71 -5.16 4.53 -54.86 -0.25 -5.41 16 8 C 0.15 0.96 2.57 -67.93 -0.17 0.78 16 9 H 0.10 0.80 7.58 -51.93 -0.39 0.41 16 10 C -0.16 -0.90 9.48 37.16 0.35 -0.54 16 11 C -0.14 -0.83 4.87 -26.73 -0.13 -0.96 16 12 C 0.12 1.23 5.56 -4.04 -0.02 1.21 16 13 N -0.74 -9.06 5.56 -60.29 -0.33 -9.39 16 14 C 0.53 9.68 7.85 -10.99 -0.09 9.60 16 15 O -0.52 -11.72 15.86 5.55 0.09 -11.63 16 16 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 O 0.12 1.19 11.04 15.54 0.17 1.36 16 27 N -0.34 -3.65 12.04 33.52 0.40 -3.25 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.41 2.37 8.43 -40.82 -0.34 2.03 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.40 3.55 8.47 -40.82 -0.35 3.21 16 41 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -37.47 391.50 -7.19 -44.66 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.10 Total: 0.08 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.65 Total: -3.20 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.55 Total: -43.50 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.35 Total: -16.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.47 -7.19 -44.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.606 kcal (2) G-P(sol) polarization free energy of solvation -37.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds