Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34250 * 126.52431 * 2 1 4 4 C 1.34054 * 108.22488 * 179.87667 * 3 2 1 5 5 N 1.29927 * 109.24306 * 0.40094 * 4 3 2 6 6 C 1.36069 * 108.47746 * 359.75591 * 5 4 3 7 7 C 1.47422 * 126.44632 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99671 * 179.97438 * 7 6 5 9 9 N 1.34775 * 120.00299 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00023 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47182 * 324.99340 * 10 9 7 12 12 C 1.53001 * 109.47468 * 84.99781 * 10 9 7 13 13 C 1.52997 * 109.47123 * 204.99802 * 10 9 7 14 14 C 1.52994 * 109.47477 * 64.99810 * 13 10 9 15 15 N 1.46499 * 109.47776 * 180.02562 * 14 13 10 16 16 C 1.34775 * 120.00221 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00003 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99947 * 179.97438 * 16 15 14 19 19 S 1.80997 * 109.47351 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00240 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99905 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99977 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99929 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00125 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46930 * 90.00245 * 24 22 20 26 26 H 1.48495 * 109.47232 * 210.00440 * 24 22 20 27 27 H 1.48504 * 109.47022 * 330.00662 * 24 22 20 28 28 H 1.09001 * 109.46953 * 269.68104 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.67702 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68332 * 1 2 3 31 31 H 1.08000 * 125.37595 * 180.13184 * 4 3 2 32 32 H 0.97003 * 119.99675 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.47279 * 59.99619 * 12 10 9 34 34 H 1.08998 * 109.47190 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.46832 * 299.99977 * 12 10 9 36 36 H 1.09008 * 109.47457 * 185.00239 * 13 10 9 37 37 H 1.09004 * 109.47563 * 304.99811 * 13 10 9 38 38 H 1.08998 * 109.47168 * 300.00492 * 14 13 10 39 39 H 1.09009 * 109.47170 * 59.99605 * 14 13 10 40 40 H 0.97002 * 119.99740 * 359.97438 * 15 14 13 41 41 H 1.08998 * 109.47334 * 300.00573 * 18 16 15 42 42 H 1.09004 * 109.47527 * 60.00162 * 18 16 15 43 43 H 0.97000 * 119.99830 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 0.0027 5 7 3.6002 -0.6411 -0.0041 6 6 2.3170 -1.0936 -0.0061 7 6 1.8854 -2.5032 -0.0129 8 8 0.7003 -2.7762 -0.0135 9 7 2.8040 -3.4893 -0.0184 10 6 2.3751 -4.8900 -0.0257 11 1 1.4640 -4.9941 0.5635 12 6 2.1050 -5.3333 -1.4650 13 6 3.4760 -5.7637 0.5789 14 6 3.6595 -5.4043 2.0547 15 7 4.7141 -6.2404 2.6335 16 6 5.0509 -6.0983 3.9308 17 8 4.4814 -5.2779 4.6188 18 6 6.1353 -6.9588 4.5263 19 16 6.3525 -6.5335 6.2721 20 6 7.6405 -7.6562 6.7026 21 1 8.0415 -8.3288 5.9589 22 6 8.1389 -7.6768 7.9979 23 7 9.1007 -8.5159 8.3196 24 14 7.4448 -6.5139 9.2845 25 1 6.3052 -7.1663 9.9779 26 1 8.5017 -6.1821 10.2734 27 1 6.9757 -5.2689 8.6248 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8929 -0.5088 30 1 -0.3633 -0.8871 -0.5187 31 1 4.4489 1.2977 0.0055 32 1 3.7493 -3.2715 -0.0183 33 1 3.0161 -5.2292 -2.0542 34 1 1.7863 -6.3756 -1.4704 35 1 1.3207 -4.7108 -1.8957 36 1 3.1952 -6.8135 0.4928 37 1 4.4104 -5.5926 0.0444 38 1 3.9403 -4.3546 2.1408 39 1 2.7251 -5.5754 2.5893 40 1 5.1698 -6.8964 2.0831 41 1 5.8543 -8.0085 4.4406 42 1 7.0696 -6.7880 3.9914 43 1 9.4493 -8.5300 9.2247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = -63.910534 kcal Electronic energy + Delta-G solvation = -26095.188354 eV Core-core repulsion = 22075.115498 eV Total energy + Delta-G solvation = -4020.072856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.85492 -40.11742 -39.22844 -36.93010 -35.28217 -34.51540 -32.81013 -32.43742 -31.93657 -30.19547 -28.22421 -27.79565 -25.61658 -24.67826 -23.48322 -22.52448 -21.32082 -20.86298 -20.37928 -18.64748 -17.85201 -17.31948 -16.88055 -16.55659 -16.21235 -16.01245 -15.51809 -15.23171 -15.02711 -14.93594 -14.51138 -14.24039 -13.86706 -13.80447 -13.75510 -13.49330 -13.34650 -12.93769 -12.86179 -12.79367 -12.40260 -12.27165 -11.81262 -11.68883 -11.59816 -11.32819 -11.25731 -11.20429 -11.00455 -10.60019 -10.42701 -9.85614 -9.59386 -9.49200 -9.25552 -9.01689 -8.95579 -8.49502 -6.91479 -6.28750 -4.00358 0.68640 1.63356 2.13206 2.75229 2.76699 2.95660 2.98709 3.29844 3.34322 3.51155 3.61857 3.64806 4.19085 4.33122 4.34216 4.45075 4.51672 4.70765 4.74936 4.76827 4.97957 5.04023 5.05703 5.07546 5.10335 5.26987 5.33831 5.35549 5.41129 5.54186 5.57817 5.64776 5.73071 5.78757 5.81926 5.88543 6.01386 6.13787 6.51454 6.91931 7.23156 7.60636 7.81896 7.94353 8.41740 8.49912 9.17511 10.80431 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.002037 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.724873 B =13741.114958 C =14932.675840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.046 3.954 3 O -0.200 6.200 4 C 0.178 3.822 5 N -0.463 5.463 6 C -0.082 4.082 7 C 0.607 3.393 8 O -0.535 6.535 9 N -0.708 5.708 10 C 0.145 3.855 11 H 0.095 0.905 12 C -0.162 4.162 13 C -0.140 4.140 14 C 0.120 3.880 15 N -0.738 5.738 16 C 0.529 3.471 17 O -0.519 6.519 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.256 0.744 32 H 0.410 0.590 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.800 14.703 -24.678 32.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.011 4.011 3 O -0.086 6.086 4 C -0.051 4.051 5 N -0.192 5.192 6 C -0.202 4.202 7 C 0.393 3.607 8 O -0.412 6.412 9 N -0.360 5.360 10 C 0.041 3.959 11 H 0.113 0.887 12 C -0.220 4.220 13 C -0.178 4.178 14 C -0.004 4.004 15 N -0.392 5.392 16 C 0.315 3.685 17 O -0.393 6.393 18 C -0.274 4.274 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.272 0.728 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.934 15.421 -23.385 32.227 hybrid contribution 1.077 -0.336 -0.337 1.177 sum -14.858 15.085 -23.722 31.797 Atomic orbital electron populations 1.20626 0.82516 1.05385 1.04941 1.23792 0.95277 0.83382 0.98616 1.84394 1.18637 1.36263 1.69334 1.28038 0.85247 0.91177 1.00634 1.70731 1.21596 1.10292 1.16544 1.21453 0.88972 0.95551 1.14228 1.16660 0.85447 0.82611 0.75957 1.90786 1.16215 1.83271 1.50922 1.45891 1.10332 1.05582 1.74152 1.20953 0.98342 0.79327 0.97293 0.88652 1.22169 1.02290 1.01919 0.95671 1.22130 0.99480 1.00884 0.95318 1.21276 0.91515 0.95426 0.92159 1.45948 1.40205 1.41675 1.11393 1.20290 0.83479 0.83503 0.81209 1.90707 1.53228 1.35453 1.59933 1.23277 0.99547 1.02173 1.02448 1.84807 1.50347 1.53163 1.03302 1.22316 1.21248 1.22967 1.00332 0.89381 1.24718 0.93894 0.95058 0.97686 1.69938 1.25792 1.35627 1.20333 0.86730 0.79563 0.83323 0.82214 1.19210 1.19946 1.15926 0.88773 0.90056 0.86936 0.72825 0.75433 0.92255 0.91192 0.91857 0.89186 0.90362 0.91522 0.91485 0.76671 0.88493 0.88457 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 9.88 36.01 0.36 -0.15 16 2 C 0.05 0.41 7.44 -35.08 -0.26 0.15 16 3 O -0.20 -1.58 10.73 6.52 0.07 -1.51 16 4 C 0.18 1.19 13.19 51.96 0.69 1.88 16 5 N -0.46 -4.46 11.06 -11.48 -0.13 -4.59 16 6 C -0.08 -0.86 6.99 -83.02 -0.58 -1.44 16 7 C 0.61 6.65 7.78 -12.52 -0.10 6.55 16 8 O -0.53 -6.70 14.47 5.27 0.08 -6.62 16 9 N -0.71 -6.36 4.53 -54.89 -0.25 -6.61 16 10 C 0.15 1.13 2.57 -67.93 -0.17 0.95 16 11 H 0.10 0.88 7.58 -51.93 -0.39 0.49 16 12 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 13 C -0.14 -0.96 4.87 -26.74 -0.13 -1.09 16 14 C 0.12 1.32 5.56 -4.05 -0.02 1.29 16 15 N -0.74 -9.11 5.56 -60.30 -0.33 -9.45 16 16 C 0.53 9.45 7.85 -10.99 -0.09 9.37 16 17 O -0.52 -11.45 15.86 5.56 0.09 -11.36 16 18 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 19 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 20 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 24 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.11 0.82 6.48 -51.93 -0.34 0.49 16 31 H 0.26 0.42 8.06 -52.49 -0.42 0.00 16 32 H 0.41 3.45 8.33 -40.82 -0.34 3.11 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -37.74 385.15 -6.17 -43.92 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.05 Total: 2.10 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 0.48 Total: 2.59 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.06 Total: -46.49 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.23 Total: -19.49 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.74 -6.17 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.995 kcal (2) G-P(sol) polarization free energy of solvation -37.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds