Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33694 * 126.26901 * 2 1 4 4 C 1.30616 * 108.99186 * 180.02562 * 3 2 1 5 5 O 1.33664 * 109.16008 * 359.97438 * 4 3 2 6 6 C 1.35346 * 107.67916 * 0.02562 * 5 4 3 7 7 C 1.46724 * 126.64464 * 180.02562 * 6 5 4 8 8 O 1.21685 * 120.00495 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99823 * 359.96917 * 7 6 5 10 10 C 1.46502 * 120.00055 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.47044 * 325.00550 * 10 9 7 12 12 C 1.52999 * 109.46732 * 85.00098 * 10 9 7 13 13 C 1.52994 * 109.47400 * 204.99878 * 10 9 7 14 14 C 1.53001 * 109.46866 * 64.99991 * 13 10 9 15 15 N 1.46503 * 109.47159 * 179.97438 * 14 13 10 16 16 C 1.34775 * 120.00126 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00017 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00351 * 179.97438 * 16 15 14 19 19 S 1.80998 * 109.47342 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99885 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00479 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99920 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00148 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99991 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47058 * 60.00497 * 24 22 20 26 26 H 1.48502 * 109.47298 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47417 * 300.00364 * 24 22 20 28 28 H 1.09001 * 109.47281 * 89.98056 * 1 2 3 29 29 H 1.08995 * 109.47025 * 209.97560 * 1 2 3 30 30 H 1.08998 * 109.47247 * 329.97933 * 1 2 3 31 31 H 1.08006 * 125.42523 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00230 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47752 * 299.99876 * 12 10 9 34 34 H 1.08997 * 109.47411 * 60.00286 * 12 10 9 35 35 H 1.09005 * 109.47253 * 180.02562 * 12 10 9 36 36 H 1.08998 * 109.47525 * 185.00188 * 13 10 9 37 37 H 1.09008 * 109.47541 * 305.00575 * 13 10 9 38 38 H 1.08995 * 109.47779 * 299.99911 * 14 13 10 39 39 H 1.09000 * 109.47360 * 60.00208 * 14 13 10 40 40 H 0.96994 * 120.00174 * 0.02562 * 15 14 13 41 41 H 1.08998 * 109.47532 * 300.00735 * 18 16 15 42 42 H 1.09013 * 109.46709 * 60.00449 * 18 16 15 43 43 H 0.96998 * 119.99674 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6900 -0.0006 5 8 3.5890 -0.6459 -0.0004 6 6 2.3137 -1.0991 -0.0002 7 6 1.8827 -2.5016 0.0005 8 8 0.6967 -2.7737 0.0010 9 7 2.8005 -3.4886 0.0006 10 6 2.3702 -4.8890 0.0007 11 1 1.4589 -4.9890 0.5901 12 6 2.1001 -5.3396 -1.4362 13 6 3.4701 -5.7605 0.6103 14 6 3.6535 -5.3932 2.0842 15 7 4.7063 -6.2281 2.6681 16 6 5.0428 -6.0794 3.9647 17 8 4.4738 -5.2548 4.6482 18 6 6.1253 -6.9385 4.5655 19 16 6.3425 -6.5040 6.3091 20 6 7.6282 -7.6266 6.7464 21 1 8.0290 -8.3035 6.0064 22 6 8.1260 -7.6410 8.0420 23 7 7.6373 -6.8164 8.9441 24 14 9.4886 -8.8317 8.5058 25 1 10.6840 -8.5678 7.6651 26 1 9.8404 -8.6484 9.9369 27 1 9.0253 -10.2250 8.2839 28 1 -0.3634 0.0003 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 4.4043 1.3445 -0.0011 32 1 3.7459 -3.2718 0.0004 33 1 1.3165 -4.7189 -1.8706 34 1 3.0115 -5.2397 -2.0257 35 1 1.7795 -6.3815 -1.4362 36 1 3.1883 -6.8103 0.5298 37 1 4.4048 -5.5930 0.0751 38 1 3.9353 -4.3434 2.1648 39 1 2.7189 -5.5606 2.6195 40 1 5.1616 -6.8873 2.1214 41 1 5.8426 -7.9882 4.4855 42 1 7.0602 -6.7723 4.0301 43 1 7.9849 -6.8268 9.8496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = -61.951323 kcal Electronic energy + Delta-G solvation = -26077.402381 eV Core-core repulsion = 22057.414482 eV Total energy + Delta-G solvation = -4019.987899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.84440 -40.21412 -39.17941 -37.04548 -35.72147 -34.49837 -32.46642 -32.43987 -31.64384 -30.15735 -28.20568 -28.13749 -25.51358 -24.60876 -23.50621 -22.42734 -21.35881 -21.02224 -20.35022 -18.69556 -17.85356 -17.31458 -17.00870 -16.78261 -16.24234 -16.03492 -15.46134 -15.12035 -14.99012 -14.82053 -14.68874 -14.13830 -13.99270 -13.83375 -13.62496 -13.39314 -13.25874 -12.98845 -12.63638 -12.57528 -12.42186 -12.21928 -11.73649 -11.60522 -11.50886 -11.36496 -11.28241 -11.06523 -11.05408 -10.78563 -10.52253 -9.84836 -9.72426 -9.44222 -9.27907 -9.08314 -8.94137 -8.26212 -6.52328 -6.23220 -3.94245 0.40540 2.01304 2.03254 2.67419 2.72893 2.98555 3.06098 3.21914 3.25837 3.28848 3.63222 3.64756 4.18696 4.26222 4.32145 4.39948 4.47243 4.65264 4.96808 5.00313 5.02479 5.07060 5.11732 5.17364 5.23497 5.27055 5.31695 5.48221 5.50458 5.55966 5.59248 5.65859 5.76971 5.85884 5.86702 5.91228 6.01530 6.10393 6.54565 6.86773 7.17120 7.57294 7.60758 7.65070 8.33135 8.57213 9.21788 10.84127 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.001912 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.047392 B =14640.207904 C =15666.195464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.083 3.917 3 N -0.495 5.495 4 C 0.208 3.792 5 O -0.191 6.191 6 C -0.121 4.121 7 C 0.614 3.386 8 O -0.512 6.512 9 N -0.714 5.714 10 C 0.146 3.854 11 H 0.098 0.902 12 C -0.163 4.163 13 C -0.140 4.140 14 C 0.120 3.880 15 N -0.740 5.740 16 C 0.530 3.470 17 O -0.516 6.516 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.258 0.742 32 H 0.406 0.594 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 8.327 -25.518 28.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 N -0.224 5.224 4 C -0.017 4.017 5 O -0.077 6.077 6 C -0.176 4.176 7 C 0.399 3.601 8 O -0.389 6.389 9 N -0.365 5.365 10 C 0.041 3.959 11 H 0.116 0.884 12 C -0.221 4.221 13 C -0.178 4.178 14 C -0.004 4.004 15 N -0.395 5.395 16 C 0.316 3.684 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.274 0.726 32 H 0.241 0.759 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.330 10.138 -24.165 28.550 hybrid contribution 2.775 -2.382 -0.748 3.733 sum -8.555 7.757 -24.914 27.460 Atomic orbital electron populations 1.20418 0.85223 1.04631 1.03714 1.22113 0.98481 0.86341 0.97130 1.70384 1.01365 1.31405 1.19250 1.28401 0.97678 0.79330 0.96314 1.84496 1.29524 1.24561 1.69105 1.22865 0.81578 0.96245 1.16881 1.16261 0.85768 0.81363 0.76698 1.90870 1.15665 1.81882 1.50467 1.46012 1.09939 1.06080 1.74470 1.20999 0.98541 0.78874 0.97469 0.88400 1.22177 1.02340 1.02077 0.95533 1.22138 0.99327 1.00954 0.95404 1.21263 0.91782 0.95372 0.92022 1.45989 1.40359 1.41522 1.11651 1.20334 0.83470 0.83545 0.81001 1.90715 1.53071 1.35140 1.60097 1.23530 0.98999 1.01890 1.05974 1.85422 1.49159 1.51311 0.97492 1.22822 1.22910 1.23764 0.98972 0.90969 1.25002 0.97166 0.96141 0.95303 1.70010 1.41027 1.35575 1.03649 0.86219 0.81067 0.80595 0.77581 1.19946 1.20801 1.19926 0.89957 0.88524 0.90308 0.72650 0.75873 0.91751 0.92228 0.91038 0.89067 0.90403 0.91721 0.91425 0.76819 0.89198 0.89241 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.87 36.00 0.36 -0.36 16 2 C 0.08 0.86 7.16 -82.47 -0.59 0.27 16 3 N -0.49 -4.90 11.26 -10.88 -0.12 -5.02 16 4 C 0.21 1.44 13.21 52.25 0.69 2.13 16 5 O -0.19 -1.62 10.57 4.42 0.05 -1.58 16 6 C -0.12 -1.22 7.18 -36.84 -0.26 -1.49 16 7 C 0.61 6.29 7.75 -12.83 -0.10 6.19 16 8 O -0.51 -6.28 14.45 5.20 0.08 -6.20 16 9 N -0.71 -5.60 4.53 -55.11 -0.25 -5.85 16 10 C 0.15 1.02 2.57 -67.93 -0.17 0.84 16 11 H 0.10 0.84 7.57 -51.93 -0.39 0.44 16 12 C -0.16 -0.96 9.48 37.16 0.35 -0.60 16 13 C -0.14 -0.87 4.87 -26.73 -0.13 -1.00 16 14 C 0.12 1.27 5.56 -4.04 -0.02 1.25 16 15 N -0.74 -9.12 5.56 -60.29 -0.33 -9.46 16 16 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 17 O -0.52 -11.72 15.86 5.55 0.09 -11.63 16 18 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 24 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.92 6.47 -51.93 -0.34 0.58 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.26 0.41 8.06 -52.48 -0.42 -0.01 16 32 H 0.41 2.65 8.40 -40.82 -0.34 2.31 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 38 H 0.06 0.77 7.75 -51.93 -0.40 0.36 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.40 3.59 8.47 -40.82 -0.35 3.24 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -37.94 387.81 -6.72 -44.66 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.01 Total: 1.11 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 0.45 Total: 1.12 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.03 Total: -45.70 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.21 Total: -19.41 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.94 -6.72 -44.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.295 kcal (2) G-P(sol) polarization free energy of solvation -37.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds