Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35319 * 126.66471 * 2 1 4 4 C 1.42274 * 103.92252 * 180.13180 * 3 2 1 5 5 C 1.48332 * 126.93782 * 179.91062 * 4 3 2 6 6 O 1.21495 * 119.99747 * 359.71602 * 5 4 3 7 7 N 1.34773 * 119.99808 * 179.71445 * 5 4 3 8 8 C 1.46500 * 119.99910 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.47452 * 324.99846 * 8 7 5 10 10 C 1.53006 * 109.46998 * 84.99768 * 8 7 5 11 11 C 1.52997 * 109.47007 * 204.99627 * 8 7 5 12 12 C 1.53001 * 109.47328 * 65.00131 * 11 8 7 13 13 N 1.46496 * 109.47207 * 179.97438 * 12 11 8 14 14 C 1.34779 * 119.99955 * 179.97438 * 13 12 11 15 15 O 1.21285 * 119.99808 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00119 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.47046 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00146 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99829 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00338 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99676 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00082 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47036 * 60.00002 * 22 20 18 24 24 H 1.48500 * 109.46842 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47020 * 300.00132 * 22 20 18 26 26 N 1.30985 * 106.12218 * 359.65430 * 4 3 2 27 27 O 1.20903 * 111.43880 * 0.22019 * 26 4 3 28 28 H 1.09003 * 109.46686 * 180.28480 * 1 2 3 29 29 H 1.08998 * 109.46629 * 300.27773 * 1 2 3 30 30 H 1.08998 * 109.47199 * 60.28180 * 1 2 3 31 31 H 1.07996 * 128.03832 * 0.02562 * 3 2 1 32 32 H 0.97003 * 120.00095 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.46998 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.47050 * 299.99945 * 10 8 7 35 35 H 1.09001 * 109.46801 * 60.00058 * 10 8 7 36 36 H 1.09002 * 109.47196 * 184.99891 * 11 8 7 37 37 H 1.09001 * 109.47630 * 304.99986 * 11 8 7 38 38 H 1.09002 * 109.46786 * 300.00010 * 12 11 8 39 39 H 1.09001 * 109.46883 * 59.99398 * 12 11 8 40 40 H 0.96999 * 120.00300 * 0.02562 * 13 12 11 41 41 H 1.09001 * 109.46582 * 299.99539 * 16 14 13 42 42 H 1.08993 * 109.47443 * 59.99924 * 16 14 13 43 43 H 0.97001 * 119.99590 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6272 0.5354 -0.0032 5 6 4.9076 1.2843 -0.0064 6 8 4.9007 2.4992 -0.0116 7 7 6.0785 0.6169 -0.0034 8 6 7.3431 1.3565 -0.0059 9 1 7.2320 2.2641 -0.5990 10 6 7.7194 1.7282 1.4298 11 6 8.4435 0.4829 -0.6117 12 6 8.1287 0.2144 -2.0847 13 7 9.1826 -0.6215 -2.6648 14 6 9.1155 -0.9882 -3.9600 15 8 8.1823 -0.6265 -4.6451 16 6 10.1994 -1.8486 -4.5567 17 16 9.8269 -2.1660 -6.2993 18 6 11.2143 -3.1622 -6.7322 19 1 11.9650 -3.3939 -5.9910 20 6 11.3424 -3.6493 -8.0256 21 7 10.4272 -3.3674 -8.9287 22 14 12.8137 -4.7049 -8.4846 23 1 12.8308 -5.9251 -7.6384 24 1 12.7158 -5.0956 -9.9140 25 1 14.0637 -3.9335 -8.2662 26 7 3.4762 -0.7657 0.0029 27 8 2.3074 -1.0749 0.0048 28 1 -0.3633 -1.0277 0.0051 29 1 -0.3632 0.5181 0.8875 30 1 -0.3633 0.5094 -0.8925 31 1 2.0301 2.1271 0.0004 32 1 6.0839 -0.3531 0.0012 33 1 8.6606 2.2781 1.4279 34 1 6.9355 2.3505 1.8613 35 1 7.8306 0.8204 2.0228 36 1 9.4009 0.9979 -0.5329 37 1 8.4944 -0.4632 -0.0728 38 1 7.1712 -0.3006 -2.1635 39 1 8.0777 1.1605 -2.6236 40 1 9.9284 -0.9117 -2.1166 41 1 11.1567 -1.3333 -4.4782 42 1 10.2505 -2.7944 -4.0176 43 1 10.5170 -3.7075 -9.8326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = -24.219032 kcal Electronic energy + Delta-G solvation = -25818.877603 eV Core-core repulsion = 21800.525899 eV Total energy + Delta-G solvation = -4018.351704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.46659 -40.23176 -39.14824 -36.94840 -34.55405 -34.52634 -33.81749 -32.42738 -31.81669 -30.10295 -28.29931 -28.15986 -25.54087 -25.43046 -23.49931 -23.04501 -21.45527 -20.59973 -20.29309 -18.22140 -18.02737 -17.80029 -17.28673 -16.70358 -16.20811 -16.00549 -15.40166 -15.18714 -14.80608 -14.80184 -14.30461 -14.19728 -13.97950 -13.93343 -13.80763 -13.76750 -13.24638 -12.99712 -12.92593 -12.59572 -12.42391 -12.19683 -11.87870 -11.70180 -11.56615 -11.32352 -11.04534 -11.03752 -10.85729 -10.76800 -10.63124 -9.84751 -9.82759 -9.59626 -9.39594 -9.06374 -8.90636 -8.23860 -6.50072 -6.21306 -3.92133 0.72465 1.25446 2.44572 2.61515 2.79944 3.01332 3.09426 3.23497 3.27314 3.30589 3.54996 3.67666 4.05629 4.20593 4.40336 4.47445 4.52723 4.68786 4.70169 4.82867 4.88680 5.01465 5.03660 5.09425 5.13610 5.20428 5.27251 5.28391 5.31267 5.51380 5.54290 5.62040 5.69637 5.79826 5.88902 5.90634 6.04013 6.13077 6.58084 6.96059 7.56579 7.59195 7.68638 7.72429 8.35075 8.60571 9.23664 10.86068 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.001900 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.139881 B =14731.227057 C =16147.369563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.031 4.031 3 C -0.186 4.186 4 C -0.026 4.026 5 C 0.603 3.397 6 O -0.520 6.520 7 N -0.710 5.710 8 C 0.145 3.855 9 H 0.097 0.903 10 C -0.163 4.163 11 C -0.140 4.140 12 C 0.120 3.880 13 N -0.740 5.740 14 C 0.530 3.470 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.330 5.330 27 O 0.124 5.876 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.181 0.819 32 H 0.408 0.592 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.631 8.388 25.514 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.209 4.209 4 C -0.185 4.185 5 C 0.387 3.613 6 O -0.394 6.394 7 N -0.362 5.362 8 C 0.041 3.959 9 H 0.115 0.885 10 C -0.221 4.221 11 C -0.178 4.178 12 C -0.004 4.004 13 N -0.395 5.395 14 C 0.316 3.684 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 N -0.031 5.031 27 O 0.047 5.953 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.198 0.802 32 H 0.243 0.757 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.322 8.883 24.161 29.957 hybrid contribution 2.078 -0.995 0.741 2.420 sum -13.244 7.888 24.902 29.287 Atomic orbital electron populations 1.20405 0.83256 1.05103 1.04501 1.24545 0.96654 0.85337 1.02840 1.22427 0.89650 1.01635 1.07139 1.23482 0.96780 0.90249 1.08030 1.16840 0.81619 0.86344 0.76506 1.90809 1.86741 1.12423 1.49451 1.45981 1.05139 1.10918 1.74181 1.21005 0.81648 0.95773 0.97502 0.88470 1.22176 1.02326 1.02042 0.95562 1.22136 0.99166 1.01050 0.95458 1.21261 0.91505 0.95617 0.92062 1.45983 1.26927 1.54808 1.11759 1.20334 0.87082 0.79942 0.80996 1.90713 1.34228 1.54169 1.59938 1.23528 0.99702 1.01160 1.05987 1.85419 1.33598 1.66692 0.97673 1.22828 1.09598 1.36929 0.99098 0.90971 1.25000 0.97123 0.96198 0.95294 1.70012 1.33415 1.43158 1.03688 0.86218 0.81563 0.80107 0.77568 1.19943 1.20801 1.19936 1.74183 0.97446 1.15484 1.15972 1.84794 1.11069 1.33511 1.65879 0.89495 0.88846 0.88723 0.80157 0.75667 0.91008 0.91813 0.92194 0.89051 0.90370 0.91704 0.91446 0.76817 0.89203 0.89222 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 10.45 36.01 0.38 0.18 16 2 C -0.03 -0.21 7.47 -35.35 -0.26 -0.48 16 3 C -0.19 -1.58 10.92 -39.07 -0.43 -2.01 16 4 C -0.03 -0.28 7.19 -82.52 -0.59 -0.88 16 5 C 0.60 6.98 7.81 -12.11 -0.09 6.88 16 6 O -0.52 -7.24 16.61 5.37 0.09 -7.15 16 7 N -0.71 -6.64 4.53 -54.60 -0.25 -6.89 16 8 C 0.15 1.18 2.58 -67.93 -0.17 1.01 16 9 H 0.10 0.94 7.58 -51.93 -0.39 0.55 16 10 C -0.16 -1.11 9.48 37.16 0.35 -0.76 16 11 C -0.14 -1.01 4.87 -26.73 -0.13 -1.14 16 12 C 0.12 1.38 5.56 -4.04 -0.02 1.36 16 13 N -0.74 -9.70 5.56 -60.29 -0.33 -10.03 16 14 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 15 O -0.52 -12.07 15.86 5.55 0.09 -11.98 16 16 C -0.15 -3.11 6.16 36.00 0.22 -2.88 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 N -0.33 -3.57 11.84 33.29 0.39 -3.17 16 27 O 0.12 1.14 11.18 17.25 0.19 1.33 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.41 3.47 8.36 -40.82 -0.34 3.13 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.40 3.87 8.47 -40.82 -0.35 3.53 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -37.94 391.47 -7.17 -45.11 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.10 Total: 1.75 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.64 Total: -1.83 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.55 Total: -45.71 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.37 Total: -17.81 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.94 -7.17 -45.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.886 kcal (2) G-P(sol) polarization free energy of solvation -37.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds