Wall clock time and date at job start Sat Apr 11 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35317 * 128.03685 * 2 1 4 4 O 1.34011 * 106.66755 * 180.02562 * 3 2 1 5 5 N 1.20900 * 111.85020 * 359.97438 * 4 3 2 6 6 C 1.30984 * 111.43877 * 0.02562 * 5 4 3 7 7 C 1.48327 * 126.94115 * 179.73700 * 6 5 4 8 8 O 1.21503 * 120.00133 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00113 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00291 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46866 * 325.00501 * 10 9 7 12 12 C 1.53001 * 109.46706 * 85.00313 * 10 9 7 13 13 C 1.52993 * 109.47076 * 205.00241 * 10 9 7 14 14 C 1.52997 * 109.47406 * 65.00197 * 13 10 9 15 15 N 1.46503 * 109.47154 * 179.97438 * 14 13 10 16 16 C 1.34778 * 119.99606 * 180.02562 * 15 14 13 17 17 O 1.21281 * 120.00358 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99784 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.47306 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00415 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99811 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00459 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99882 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47223 * 89.99765 * 24 22 20 26 26 H 1.48497 * 109.47209 * 210.00322 * 24 22 20 27 27 H 1.48503 * 109.47126 * 330.00217 * 24 22 20 28 28 H 1.08993 * 109.47353 * 269.97822 * 1 2 3 29 29 H 1.08998 * 109.47354 * 29.98275 * 1 2 3 30 30 H 1.09003 * 109.46851 * 149.97919 * 1 2 3 31 31 H 1.08006 * 126.66525 * 0.03651 * 3 2 1 32 32 H 0.97001 * 119.99733 * 0.02562 * 9 7 6 33 33 H 1.08997 * 109.47153 * 179.97438 * 12 10 9 34 34 H 1.08996 * 109.47119 * 299.99774 * 12 10 9 35 35 H 1.08996 * 109.47214 * 59.99918 * 12 10 9 36 36 H 1.08999 * 109.47043 * 185.00592 * 13 10 9 37 37 H 1.09001 * 109.47476 * 305.00182 * 13 10 9 38 38 H 1.08999 * 109.47343 * 300.00212 * 14 13 10 39 39 H 1.09001 * 109.46815 * 59.99580 * 14 13 10 40 40 H 0.96990 * 120.00095 * 0.02562 * 15 14 13 41 41 H 1.08998 * 109.47393 * 299.99788 * 18 16 15 42 42 H 1.09001 * 109.47435 * 59.99920 * 18 16 15 43 43 H 0.97002 * 120.00295 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5775 -0.0006 5 7 3.5989 -0.6315 -0.0004 6 6 2.3838 -1.1205 -0.0003 7 6 1.9993 -2.5530 -0.0055 8 8 0.8256 -2.8671 -0.0052 9 7 2.9520 -3.5064 -0.0106 10 6 2.5723 -4.9214 -0.0152 11 1 1.6660 -5.0563 0.5752 12 6 2.3164 -5.3760 -1.4535 13 6 3.7038 -5.7550 0.5895 14 6 3.8762 -5.3870 2.0646 15 7 4.9593 -6.1857 2.6437 16 6 5.2915 -6.0307 3.9407 17 8 4.6936 -5.2304 4.6284 18 6 6.4060 -6.8517 4.5363 19 16 6.6089 -6.4176 6.2817 20 6 7.9349 -7.4947 6.7128 21 1 8.3593 -8.1532 5.9693 22 6 8.4349 -7.4963 8.0076 23 7 7.9181 -6.6935 8.9136 24 14 9.8403 -8.6387 8.4648 25 1 11.1347 -7.9494 8.2312 26 1 9.7294 -9.0110 9.8981 27 1 9.7742 -9.8642 7.6286 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 2.0558 2.1076 0.0006 32 1 3.8890 -3.2557 -0.0105 33 1 2.0344 -6.4289 -1.4570 34 1 1.5103 -4.7822 -1.8843 35 1 3.2226 -5.2410 -2.0439 36 1 3.4599 -6.8140 0.5053 37 1 4.6310 -5.5520 0.0537 38 1 4.1201 -4.3280 2.1488 39 1 2.9490 -5.5899 2.6004 40 1 5.4372 -6.8260 2.0938 41 1 6.1623 -7.9108 4.4517 42 1 7.3333 -6.6484 4.0008 43 1 8.2672 -6.6948 9.8187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075676718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:09 Heat of formation + Delta-G solvation = -24.275538 kcal Electronic energy + Delta-G solvation = -26030.275318 eV Core-core repulsion = 22011.921164 eV Total energy + Delta-G solvation = -4018.354154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.48485 -40.24638 -39.15551 -36.99676 -35.06621 -34.52494 -33.07570 -32.43051 -31.62366 -30.10216 -28.56729 -28.16447 -25.51688 -25.36686 -23.45308 -22.09987 -21.65964 -20.92826 -20.32927 -18.76312 -18.16525 -17.83833 -17.04468 -16.67550 -16.20278 -16.00497 -15.40698 -15.18373 -14.90192 -14.80591 -14.41823 -13.99731 -13.97051 -13.81008 -13.67863 -13.62126 -13.24107 -12.96092 -12.78098 -12.59562 -12.41946 -12.19449 -11.78898 -11.70470 -11.57206 -11.32492 -11.06503 -11.02691 -10.76338 -10.70425 -10.55486 -9.85604 -9.82159 -9.59373 -9.39910 -9.07362 -8.91095 -8.23715 -6.50335 -6.21732 -3.92454 0.73776 1.25732 2.48357 2.74386 2.78526 3.01047 3.09076 3.22171 3.27448 3.31382 3.53252 3.67382 4.13016 4.20180 4.39672 4.44115 4.48470 4.65553 4.68789 4.95951 5.02355 5.03155 5.13319 5.20047 5.22690 5.25953 5.26874 5.30462 5.41960 5.53130 5.61702 5.68730 5.78645 5.84183 5.88719 5.90269 6.04520 6.12841 6.57648 6.95907 7.55725 7.59238 7.68262 7.72210 8.34978 8.60203 9.23418 10.85694 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016282 B = 0.001906 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.314851 B =14687.406367 C =15728.804969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.151 4.151 3 C -0.065 4.065 4 O 0.127 5.873 5 N -0.328 5.328 6 C -0.032 4.032 7 C 0.603 3.397 8 O -0.518 6.518 9 N -0.710 5.710 10 C 0.146 3.854 11 H 0.097 0.903 12 C -0.163 4.163 13 C -0.140 4.140 14 C 0.120 3.880 15 N -0.740 5.740 16 C 0.530 3.470 17 O -0.516 6.516 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.224 0.776 32 H 0.408 0.592 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 10.717 -25.524 30.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.156 4.156 3 C -0.146 4.146 4 O 0.050 5.950 5 N -0.028 5.028 6 C -0.191 4.191 7 C 0.387 3.613 8 O -0.392 6.392 9 N -0.363 5.363 10 C 0.041 3.959 11 H 0.115 0.885 12 C -0.221 4.221 13 C -0.178 4.178 14 C -0.004 4.004 15 N -0.395 5.395 16 C 0.317 3.683 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.241 0.759 32 H 0.243 0.757 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.311 11.234 -24.172 29.793 hybrid contribution 1.585 -1.540 -0.724 2.326 sum -11.727 9.693 -24.896 29.177 Atomic orbital electron populations 1.20232 0.86460 1.03830 1.03433 1.21387 0.99198 0.90052 1.04958 1.25828 0.82261 1.01427 1.05078 1.84783 1.29540 1.15115 1.65515 1.74180 1.21554 0.91803 1.15265 1.23440 0.89704 0.97091 1.08869 1.16824 0.85581 0.82358 0.76506 1.90787 1.17353 1.81629 1.49473 1.45988 1.09941 1.06106 1.74222 1.20997 0.98750 0.78674 0.97459 0.88476 1.22171 1.02367 1.02004 0.95545 1.22135 0.99078 1.01165 0.95447 1.21258 0.91131 0.95984 0.92051 1.45983 1.37982 1.43940 1.11580 1.20332 0.84055 0.82950 0.81011 1.90712 1.52839 1.35633 1.59860 1.23527 0.98672 1.02175 1.05999 1.85421 1.46224 1.54377 0.97399 1.22864 1.20529 1.26062 0.98911 0.90923 1.25001 0.97321 0.96029 0.95295 1.70020 1.40554 1.36190 1.03506 0.86159 0.81208 0.80268 0.77806 1.20268 1.20744 1.19701 0.90349 0.90959 0.89492 0.75917 0.75699 0.91030 0.91816 0.92214 0.89063 0.90380 0.91714 0.91458 0.76819 0.89201 0.89223 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.01 36.01 0.36 -0.19 16 2 C -0.15 -1.25 6.34 -104.11 -0.66 -1.91 16 3 C -0.07 -0.39 12.24 29.69 0.36 -0.02 16 4 O 0.13 1.08 11.18 17.26 0.19 1.27 16 5 N -0.33 -3.43 11.84 33.29 0.39 -3.04 16 6 C -0.03 -0.34 7.19 -82.53 -0.59 -0.93 16 7 C 0.60 6.78 7.81 -12.11 -0.09 6.68 16 8 O -0.52 -6.81 15.00 5.36 0.08 -6.73 16 9 N -0.71 -6.50 4.53 -54.60 -0.25 -6.75 16 10 C 0.15 1.16 2.57 -67.93 -0.17 0.98 16 11 H 0.10 0.92 7.58 -51.93 -0.39 0.52 16 12 C -0.16 -1.08 9.48 37.16 0.35 -0.73 16 13 C -0.14 -1.00 4.87 -26.74 -0.13 -1.13 16 14 C 0.12 1.37 5.56 -4.04 -0.02 1.35 16 15 N -0.74 -9.65 5.56 -60.29 -0.33 -9.99 16 16 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 17 O -0.52 -12.04 15.86 5.56 0.09 -11.95 16 18 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 24 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.72 6.88 -51.93 -0.36 0.37 16 31 H 0.22 0.25 8.06 -52.48 -0.42 -0.17 16 32 H 0.41 3.42 8.36 -40.82 -0.34 3.08 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.40 3.85 8.47 -40.82 -0.35 3.51 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -37.69 388.35 -6.78 -44.46 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.04 Total: 1.78 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.27 Total: -1.89 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.55 Total: -45.37 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.36 Total: -17.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.69 -6.78 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075676718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.187 kcal (2) G-P(sol) polarization free energy of solvation -37.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds