Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41254 * 128.08094 * 2 1 4 4 N 1.30119 * 106.59226 * 180.23283 * 3 2 1 5 5 O 1.20880 * 111.98597 * 359.78043 * 4 3 2 6 6 C 1.34642 * 111.46749 * 0.02562 * 5 4 3 7 7 C 1.47519 * 126.94788 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00095 * 180.02562 * 7 6 5 9 9 N 1.34769 * 119.99540 * 0.02589 * 7 6 5 10 10 C 1.46505 * 119.99686 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47068 * 324.99893 * 10 9 7 12 12 C 1.53002 * 109.47411 * 84.99974 * 10 9 7 13 13 C 1.52997 * 109.47212 * 204.99833 * 10 9 7 14 14 C 1.53004 * 109.47236 * 64.99775 * 13 10 9 15 15 N 1.46499 * 109.47194 * 180.02562 * 14 13 10 16 16 C 1.34783 * 119.99833 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00013 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99711 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.46704 * 179.97438 * 18 16 15 20 20 C 1.76210 * 99.99828 * 180.02562 * 19 18 16 21 21 H 1.07994 * 119.99512 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99860 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00083 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00045 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47018 * 90.00657 * 24 22 20 26 26 H 1.48501 * 109.47087 * 210.00301 * 24 22 20 27 27 H 1.48496 * 109.47340 * 330.00563 * 24 22 20 28 28 H 1.09000 * 109.47415 * 270.12740 * 1 2 3 29 29 H 1.08998 * 109.47202 * 30.13024 * 1 2 3 30 30 H 1.09001 * 109.47203 * 150.12823 * 1 2 3 31 31 H 1.08002 * 126.70294 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00680 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.47407 * 180.02562 * 12 10 9 34 34 H 1.09000 * 109.46986 * 300.00092 * 12 10 9 35 35 H 1.09002 * 109.47075 * 59.99363 * 12 10 9 36 36 H 1.09001 * 109.47630 * 184.99905 * 13 10 9 37 37 H 1.09004 * 109.47346 * 305.00035 * 13 10 9 38 38 H 1.09001 * 109.46917 * 300.00567 * 14 13 10 39 39 H 1.09004 * 109.46741 * 59.99889 * 14 13 10 40 40 H 0.96997 * 120.00325 * 359.97438 * 15 14 13 41 41 H 1.08993 * 109.47443 * 299.99991 * 18 16 15 42 42 H 1.09004 * 109.46924 * 60.00453 * 18 16 15 43 43 H 0.96993 * 120.00385 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5890 0.6352 -0.0051 5 8 3.5995 -0.5735 -0.0038 6 6 2.3508 -1.0771 0.0019 7 6 1.9694 -2.5022 0.0044 8 8 0.7952 -2.8172 0.0093 9 7 2.9227 -3.4548 0.0015 10 6 2.5440 -4.8700 0.0034 11 1 1.6390 -5.0031 0.5962 12 6 2.2856 -5.3309 -1.4324 13 6 3.6772 -5.7004 0.6093 14 6 3.8524 -5.3262 2.0825 15 7 4.9379 -6.1208 2.6625 16 6 5.2728 -5.9600 3.9581 17 8 4.6758 -5.1572 4.6437 18 6 6.3890 -6.7779 4.5549 19 16 6.5963 -6.3350 6.2976 20 6 7.9249 -7.4086 6.7302 21 1 8.3473 -8.0707 5.9889 22 6 8.4277 -7.4040 8.0239 23 7 9.4205 -8.2056 8.3469 24 14 7.6965 -6.2592 9.3061 25 1 6.5830 -6.9479 10.0071 26 1 8.7439 -5.8843 10.2898 27 1 7.1812 -5.0356 8.6411 28 1 -0.3634 0.0023 1.0276 29 1 -0.3633 0.8888 -0.5158 30 1 -0.3634 -0.8911 -0.5118 31 1 2.0948 2.1540 -0.0004 32 1 3.8596 -3.2035 -0.0027 33 1 2.0034 -6.3837 -1.4309 34 1 1.4782 -4.7393 -1.8641 35 1 3.1906 -5.1977 -2.0252 36 1 3.4339 -6.7599 0.5301 37 1 4.6033 -5.4990 0.0708 38 1 4.0957 -4.2666 2.1618 39 1 2.9263 -5.5275 2.6211 40 1 5.4151 -6.7632 2.1144 41 1 6.1459 -7.8374 4.4753 42 1 7.3151 -6.5762 4.0165 43 1 9.7722 -8.2021 9.2509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075677289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -23.227491 kcal Electronic energy + Delta-G solvation = -26145.422958 eV Core-core repulsion = 22127.114251 eV Total energy + Delta-G solvation = -4018.308707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.44997 -40.37077 -39.29160 -37.13186 -35.23022 -34.56469 -33.07376 -32.44718 -31.82528 -30.24969 -28.71610 -28.27647 -25.62865 -24.86485 -23.62822 -22.86427 -21.46808 -21.06238 -20.45475 -19.10414 -18.20437 -17.87916 -16.97174 -16.46193 -16.17915 -16.08385 -15.54319 -15.31864 -15.03070 -14.95940 -14.49047 -14.06656 -13.90204 -13.88324 -13.68856 -13.64620 -13.39309 -13.10016 -13.00831 -12.80290 -12.50920 -12.31866 -11.79855 -11.72202 -11.66947 -11.40395 -11.26844 -11.01272 -10.82276 -10.69792 -10.61469 -9.97895 -9.86570 -9.65836 -9.53077 -9.04686 -8.98892 -8.50974 -6.92823 -6.29653 -4.01526 0.35002 1.63473 2.14012 2.52954 2.74070 2.74796 2.95073 3.27244 3.33281 3.50400 3.62069 3.71932 4.10550 4.23787 4.32562 4.34922 4.41237 4.56122 4.61772 4.73295 4.85328 4.97117 4.97736 5.09439 5.18453 5.19744 5.23429 5.26017 5.31137 5.39794 5.46942 5.59688 5.72131 5.74686 5.76098 5.80842 5.93382 5.99310 6.46748 6.81522 7.47269 7.56164 7.64808 7.93394 8.40701 8.46099 9.16562 10.79522 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.002046 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.475719 B =13683.934880 C =14855.432640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.116 4.116 3 C -0.016 4.016 4 N -0.338 5.338 5 O 0.118 5.882 6 C -0.098 4.098 7 C 0.611 3.389 8 O -0.509 6.509 9 N -0.711 5.711 10 C 0.146 3.854 11 H 0.098 0.902 12 C -0.164 4.164 13 C -0.141 4.141 14 C 0.119 3.881 15 N -0.738 5.738 16 C 0.530 3.470 17 O -0.518 6.518 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.199 0.801 32 H 0.408 0.592 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.585 11.673 -24.695 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.194 4.194 4 N -0.037 5.037 5 O 0.044 5.956 6 C -0.164 4.164 7 C 0.395 3.605 8 O -0.384 6.384 9 N -0.363 5.363 10 C 0.042 3.958 11 H 0.116 0.884 12 C -0.222 4.222 13 C -0.179 4.179 14 C -0.005 4.005 15 N -0.393 5.393 16 C 0.315 3.685 17 O -0.393 6.393 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.216 0.784 32 H 0.244 0.756 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.098 13.276 -23.404 31.880 hybrid contribution 0.655 -0.768 -0.331 1.062 sum -16.443 12.508 -23.735 31.467 Atomic orbital electron populations 1.20351 0.86227 1.04158 1.03674 1.21678 0.99113 0.90293 1.01037 1.25040 0.87663 1.02236 1.04429 1.73782 1.23103 0.91124 1.15666 1.84969 1.28059 1.15586 1.66971 1.23990 0.84855 0.96205 1.11325 1.16438 0.85695 0.81496 0.76901 1.90853 1.17126 1.80571 1.49862 1.46022 1.09890 1.06290 1.74093 1.21017 0.98790 0.78441 0.97587 0.88368 1.22182 1.02471 1.02074 0.95470 1.22147 0.99138 1.01265 0.95360 1.21288 0.91003 0.96053 0.92153 1.45944 1.37823 1.43900 1.11615 1.20300 0.84043 0.82946 0.81166 1.90710 1.53020 1.35540 1.59986 1.23277 0.99173 1.02533 1.02487 1.84818 1.47459 1.55769 1.03575 1.22311 1.18849 1.25206 1.00517 0.89373 1.24716 0.93953 0.95005 0.97670 1.69932 1.24524 1.36822 1.20382 0.86734 0.79699 0.83190 0.82224 1.19206 1.19938 1.15925 0.89933 0.90672 0.89157 0.78383 0.75597 0.90986 0.91762 0.92070 0.88987 0.90195 0.91555 0.91391 0.76625 0.88477 0.88440 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 9.95 36.01 0.36 -0.19 16 2 C -0.12 -0.95 6.37 -103.99 -0.66 -1.61 16 3 C -0.02 -0.12 12.14 -17.13 -0.21 -0.33 16 4 N -0.34 -3.41 12.04 30.45 0.37 -3.04 16 5 O 0.12 1.13 11.04 15.55 0.17 1.30 16 6 C -0.10 -0.89 7.29 -36.31 -0.26 -1.15 16 7 C 0.61 5.55 7.78 -12.48 -0.10 5.46 16 8 O -0.51 -5.70 14.78 5.30 0.08 -5.62 16 9 N -0.71 -4.86 4.53 -54.85 -0.25 -5.11 16 10 C 0.15 0.89 2.57 -67.93 -0.17 0.71 16 11 H 0.10 0.74 7.58 -51.93 -0.39 0.35 16 12 C -0.16 -0.84 9.48 37.16 0.35 -0.48 16 13 C -0.14 -0.76 4.87 -26.73 -0.13 -0.89 16 14 C 0.12 1.15 5.56 -4.04 -0.02 1.13 16 15 N -0.74 -8.46 5.56 -60.29 -0.33 -8.79 16 16 C 0.53 9.11 7.85 -10.98 -0.09 9.02 16 17 O -0.52 -11.10 15.86 5.56 0.09 -11.01 16 18 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 19 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 20 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 24 Si 0.86 21.81 27.74 -169.99 -4.71 17.09 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.67 6.73 -51.93 -0.35 0.32 16 31 H 0.20 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.41 2.23 8.43 -40.82 -0.34 1.89 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.72 7.75 -51.93 -0.40 0.31 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.40 3.30 8.47 -40.82 -0.35 2.96 16 41 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.10 1.70 8.14 -51.91 -0.42 1.27 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -36.62 385.36 -6.57 -43.19 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.06 Total: -0.11 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.50 Total: -2.41 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.56 Total: -42.65 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.34 Total: -15.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.62 -6.57 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075677289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.960 kcal (2) G-P(sol) polarization free energy of solvation -36.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds