Wall clock time and date at job start Sat Apr 11 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30014 * 127.33325 * 2 1 4 4 O 1.20657 * 112.30351 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15455 * 359.97438 * 4 3 2 6 6 C 1.37367 * 106.34241 * 359.74342 * 5 4 3 7 7 C 1.47391 * 128.56395 * 180.26008 * 6 5 4 8 8 O 1.21613 * 119.99939 * 180.13741 * 7 6 5 9 9 N 1.34778 * 120.00367 * 0.13465 * 7 6 5 10 10 C 1.46503 * 120.00048 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.46897 * 325.00014 * 10 9 7 12 12 C 1.53003 * 109.46767 * 84.99930 * 10 9 7 13 13 C 1.53002 * 109.46997 * 204.99807 * 10 9 7 14 14 C 1.53002 * 109.47123 * 64.99987 * 13 10 9 15 15 N 1.46498 * 109.47120 * 179.97438 * 14 13 10 16 16 C 1.34771 * 119.99648 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00468 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99748 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47030 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00093 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99935 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00358 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99575 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00157 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47261 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47504 * 119.99931 * 24 22 20 27 27 H 1.48503 * 109.47217 * 239.99845 * 24 22 20 28 28 H 1.08999 * 109.46995 * 90.02801 * 1 2 3 29 29 H 1.08994 * 109.46790 * 210.02488 * 1 2 3 30 30 H 1.08997 * 109.47305 * 330.02929 * 1 2 3 31 31 H 1.07999 * 126.82761 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99599 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47094 * 60.00523 * 12 10 9 34 34 H 1.09003 * 109.46827 * 179.97438 * 12 10 9 35 35 H 1.08997 * 109.47229 * 299.99734 * 12 10 9 36 36 H 1.08991 * 109.47062 * 185.00458 * 13 10 9 37 37 H 1.09007 * 109.46979 * 305.00431 * 13 10 9 38 38 H 1.09000 * 109.46967 * 300.00267 * 14 13 10 39 39 H 1.09000 * 109.46554 * 59.99729 * 14 13 10 40 40 H 0.97002 * 119.99826 * 0.02562 * 15 14 13 41 41 H 1.09000 * 109.47421 * 299.99793 * 18 16 15 42 42 H 1.09002 * 109.47189 * 60.00542 * 18 16 15 43 43 H 0.96999 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6006 0.0015 6 6 2.3992 -1.1696 0.0075 7 6 2.0402 -2.5991 0.0161 8 8 0.8706 -2.9323 0.0181 9 7 3.0081 -3.5370 0.0218 10 6 2.6512 -4.9578 0.0298 11 1 1.7462 -5.1017 0.6198 12 6 2.4055 -5.4300 -1.4047 13 6 3.7948 -5.7674 0.6443 14 6 3.9585 -5.3829 2.1162 15 7 5.0531 -6.1585 2.7048 16 6 5.3803 -5.9859 4.0007 17 8 4.7689 -5.1883 4.6795 18 6 6.5066 -6.7834 4.6061 19 16 6.7001 -6.3285 6.3472 20 6 8.0434 -7.3791 6.7906 21 1 8.4790 -8.0384 6.0544 22 6 8.5410 -7.3602 8.0861 23 7 8.0097 -6.5570 8.9835 24 14 9.9655 -8.4735 8.5559 25 1 10.3794 -9.2728 7.3747 26 1 11.1083 -7.6463 9.0195 27 1 9.5409 -9.3870 9.6470 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.5968 -1.1193 0.0025 32 1 3.9410 -3.2712 0.0205 33 1 3.3106 -5.2861 -1.9947 34 1 2.1404 -6.4873 -1.3988 35 1 1.5908 -4.8532 -1.8425 36 1 3.5682 -6.8309 0.5697 37 1 4.7198 -5.5545 0.1082 38 1 4.1852 -4.3193 2.1907 39 1 3.0336 -5.5957 2.6522 40 1 5.5423 -6.7962 2.1617 41 1 6.2802 -7.8469 4.5310 42 1 7.4317 -6.5701 4.0703 43 1 8.3577 -6.5435 9.8888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:14 Heat of formation + Delta-G solvation = -25.997566 kcal Electronic energy + Delta-G solvation = -26000.087740 eV Core-core repulsion = 21981.658913 eV Total energy + Delta-G solvation = -4018.428827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.30760 -40.23664 -39.19750 -36.96499 -34.84306 -34.55792 -33.03640 -32.45785 -31.48359 -30.13166 -29.03628 -28.20462 -25.53916 -25.35538 -23.51359 -21.82217 -21.69345 -20.89140 -20.37835 -18.67636 -18.11307 -17.87015 -17.02801 -16.78899 -16.24838 -16.06499 -15.54522 -15.30729 -15.01152 -14.83217 -14.20203 -14.14652 -14.00204 -13.84098 -13.63329 -13.48375 -13.26992 -13.00420 -12.84413 -12.62300 -12.45124 -12.24107 -11.75630 -11.69822 -11.60844 -11.36311 -11.09495 -11.05000 -10.78275 -10.48077 -10.31103 -10.18975 -9.83907 -9.61478 -9.44271 -9.10880 -8.96592 -8.26551 -6.53473 -6.24645 -3.95498 0.61766 1.41035 2.40767 2.78432 2.79982 2.97029 3.04072 3.19319 3.25601 3.29804 3.62415 3.63782 3.87098 4.17375 4.31665 4.40624 4.41010 4.53322 4.64448 4.90597 4.97616 4.99597 5.10672 5.15705 5.18188 5.21341 5.22150 5.27650 5.36946 5.50936 5.57427 5.64348 5.76229 5.79895 5.84304 5.85359 6.01907 6.09019 6.52390 6.96868 7.56867 7.62804 7.71630 7.80718 8.32433 8.55161 9.20797 10.82835 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.001898 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.414732 B =14748.313831 C =15819.263600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.071 3.929 3 N -0.359 5.359 4 O 0.099 5.901 5 C -0.001 4.001 6 C -0.257 4.257 7 C 0.600 3.400 8 O -0.525 6.525 9 N -0.719 5.719 10 C 0.147 3.853 11 H 0.097 0.903 12 C -0.163 4.163 13 C -0.140 4.140 14 C 0.120 3.880 15 N -0.741 5.741 16 C 0.531 3.469 17 O -0.516 6.516 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.226 0.774 32 H 0.399 0.601 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 6.220 -25.586 27.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 N -0.066 5.066 4 O 0.040 5.960 5 C -0.084 4.084 6 C -0.265 4.265 7 C 0.386 3.614 8 O -0.402 6.402 9 N -0.371 5.371 10 C 0.043 3.957 11 H 0.115 0.885 12 C -0.221 4.221 13 C -0.178 4.178 14 C -0.004 4.004 15 N -0.396 5.396 16 C 0.317 3.683 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.165 5.835 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.242 0.758 32 H 0.234 0.766 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.575 8.693 -24.249 28.241 hybrid contribution 2.463 -2.692 -0.711 3.718 sum -9.112 6.000 -24.960 27.241 Atomic orbital electron populations 1.20289 0.84769 1.04623 1.03888 1.24898 0.99048 0.86214 0.99013 1.73712 0.89201 1.23550 1.20182 1.84597 1.21614 1.22936 1.66819 1.26453 1.00258 0.84270 0.97409 1.22331 0.92930 0.95603 1.15600 1.16791 0.85493 0.83050 0.76055 1.90804 1.18136 1.81870 1.49361 1.45925 1.09228 1.06298 1.75697 1.20945 0.98783 0.78657 0.97318 0.88543 1.22173 1.02346 1.01914 0.95673 1.22141 0.98940 1.01389 0.95357 1.21260 0.90933 0.96203 0.92011 1.45998 1.36998 1.44814 1.11755 1.20332 0.84299 0.82730 0.80984 1.90715 1.52567 1.35379 1.60327 1.23530 0.98524 1.02409 1.05943 1.85432 1.45041 1.55299 0.97687 1.22901 1.19485 1.26866 0.99098 0.90864 1.25005 0.97398 0.95925 0.95335 1.70027 1.40409 1.36003 1.03788 0.86107 0.80943 0.79846 0.78535 1.19621 1.20554 1.20559 0.89767 0.88501 0.90297 0.75790 0.76615 0.92279 0.91173 0.91797 0.89164 0.90437 0.91717 0.91465 0.76816 0.89211 0.89232 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.15 36.01 0.37 -0.28 16 2 C 0.07 0.71 7.58 -79.77 -0.60 0.10 16 3 N -0.36 -3.79 12.01 34.78 0.42 -3.37 16 4 O 0.10 0.86 11.06 18.66 0.21 1.06 16 5 C 0.00 -0.01 11.85 30.42 0.36 0.35 16 6 C -0.26 -2.23 6.47 -102.90 -0.67 -2.89 16 7 C 0.60 5.58 7.78 -12.53 -0.10 5.48 16 8 O -0.52 -6.52 15.35 5.27 0.08 -6.44 16 9 N -0.72 -4.57 4.53 -54.89 -0.25 -4.82 16 10 C 0.15 0.93 2.58 -67.93 -0.17 0.76 16 11 H 0.10 0.81 7.58 -51.93 -0.39 0.41 16 12 C -0.16 -0.88 9.48 37.16 0.35 -0.53 16 13 C -0.14 -0.76 4.87 -26.73 -0.13 -0.89 16 14 C 0.12 1.17 5.56 -4.04 -0.02 1.15 16 15 N -0.74 -8.63 5.56 -60.30 -0.33 -8.96 16 16 C 0.53 9.38 7.85 -10.99 -0.09 9.30 16 17 O -0.52 -11.43 15.86 5.56 0.09 -11.35 16 18 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 24 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.87 7.09 -51.93 -0.37 0.50 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.23 0.26 7.68 -52.49 -0.40 -0.15 16 32 H 0.40 1.50 7.79 -40.82 -0.32 1.18 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.40 3.34 8.47 -40.82 -0.35 3.00 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 42 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -38.20 388.24 -6.73 -44.93 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.00 Total: -1.01 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.28 Total: -2.96 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.57 Total: -42.35 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.38 Total: -16.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.20 -6.73 -44.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.932 kcal (2) G-P(sol) polarization free energy of solvation -38.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds