Wall clock time and date at job start Sat Apr 11 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30014 * 127.33325 * 2 1 4 4 O 1.20657 * 112.30351 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15455 * 359.97438 * 4 3 2 6 6 C 1.37367 * 106.34241 * 359.74342 * 5 4 3 7 7 C 1.47391 * 128.56395 * 180.26008 * 6 5 4 8 8 O 1.21613 * 119.99939 * 180.13741 * 7 6 5 9 9 N 1.34778 * 120.00367 * 0.13465 * 7 6 5 10 10 C 1.46503 * 120.00048 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.46897 * 325.00014 * 10 9 7 12 12 C 1.53003 * 109.46767 * 84.99930 * 10 9 7 13 13 C 1.53002 * 109.46997 * 204.99807 * 10 9 7 14 14 C 1.53002 * 109.47123 * 64.99987 * 13 10 9 15 15 N 1.46498 * 109.47120 * 179.97438 * 14 13 10 16 16 C 1.34771 * 119.99648 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00468 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99748 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47030 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00093 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99935 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00358 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99575 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00157 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47261 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47504 * 119.99931 * 24 22 20 27 27 H 1.48503 * 109.47217 * 239.99845 * 24 22 20 28 28 H 1.08999 * 109.46995 * 90.02801 * 1 2 3 29 29 H 1.08994 * 109.46790 * 210.02488 * 1 2 3 30 30 H 1.08997 * 109.47305 * 330.02929 * 1 2 3 31 31 H 1.07999 * 126.82761 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99599 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47094 * 60.00523 * 12 10 9 34 34 H 1.09003 * 109.46827 * 179.97438 * 12 10 9 35 35 H 1.08997 * 109.47229 * 299.99734 * 12 10 9 36 36 H 1.08991 * 109.47062 * 185.00458 * 13 10 9 37 37 H 1.09007 * 109.46979 * 305.00431 * 13 10 9 38 38 H 1.09000 * 109.46967 * 300.00267 * 14 13 10 39 39 H 1.09000 * 109.46554 * 59.99729 * 14 13 10 40 40 H 0.97002 * 119.99826 * 0.02562 * 15 14 13 41 41 H 1.09000 * 109.47421 * 299.99793 * 18 16 15 42 42 H 1.09002 * 109.47189 * 60.00542 * 18 16 15 43 43 H 0.96999 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6006 0.0015 6 6 2.3992 -1.1696 0.0075 7 6 2.0402 -2.5991 0.0161 8 8 0.8706 -2.9323 0.0181 9 7 3.0081 -3.5370 0.0218 10 6 2.6512 -4.9578 0.0298 11 1 1.7462 -5.1017 0.6198 12 6 2.4055 -5.4300 -1.4047 13 6 3.7948 -5.7674 0.6443 14 6 3.9585 -5.3829 2.1162 15 7 5.0531 -6.1585 2.7048 16 6 5.3803 -5.9859 4.0007 17 8 4.7689 -5.1883 4.6795 18 6 6.5066 -6.7834 4.6061 19 16 6.7001 -6.3285 6.3472 20 6 8.0434 -7.3791 6.7906 21 1 8.4790 -8.0384 6.0544 22 6 8.5410 -7.3602 8.0861 23 7 8.0097 -6.5570 8.9835 24 14 9.9655 -8.4735 8.5559 25 1 10.3794 -9.2728 7.3747 26 1 11.1083 -7.6463 9.0195 27 1 9.5409 -9.3870 9.6470 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.5968 -1.1193 0.0025 32 1 3.9410 -3.2712 0.0205 33 1 3.3106 -5.2861 -1.9947 34 1 2.1404 -6.4873 -1.3988 35 1 1.5908 -4.8532 -1.8425 36 1 3.5682 -6.8309 0.5697 37 1 4.7198 -5.5545 0.1082 38 1 4.1852 -4.3193 2.1907 39 1 3.0336 -5.5957 2.6522 40 1 5.5423 -6.7962 2.1617 41 1 6.2802 -7.8469 4.5310 42 1 7.4317 -6.5701 4.0703 43 1 8.3577 -6.5435 9.8888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075678152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:13 Heat of formation + Delta-G solvation = -55.272609 kcal Electronic energy + Delta-G solvation = -26001.357201 eV Core-core repulsion = 21981.658913 eV Total energy + Delta-G solvation = -4019.698288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.98486 -40.95995 -40.47385 -37.71549 -35.63835 -35.48554 -34.57503 -33.73388 -32.26410 -31.21269 -29.70946 -29.17924 -27.64336 -26.01929 -24.29113 -22.42457 -22.37004 -21.73204 -21.42315 -19.85083 -19.26592 -18.80345 -17.81550 -17.67063 -17.32741 -17.16301 -16.87079 -16.62916 -16.09194 -15.80572 -15.70585 -15.09661 -14.83439 -14.73610 -14.46251 -14.41673 -14.26814 -14.13074 -13.60612 -13.53259 -13.46544 -13.14751 -12.97417 -12.91171 -12.62505 -12.41710 -12.39065 -12.34195 -11.90984 -11.69100 -11.21754 -11.15195 -10.99757 -10.94415 -10.82880 -10.25024 -10.20904 -10.05330 -8.65680 -8.33996 -6.11829 0.05506 0.70460 1.28843 1.42311 1.49079 1.59487 1.64078 1.85256 2.12147 2.26682 2.27586 2.31641 2.99011 3.00454 3.28668 3.33449 3.73155 3.79217 3.82594 3.97610 4.07222 4.12284 4.33676 4.39362 4.45848 4.49670 4.54347 4.57220 4.59708 4.65807 4.73632 4.83485 4.92589 5.04240 5.12229 5.16508 5.35216 5.43280 5.45988 5.48172 6.21040 6.43273 6.55487 7.07672 7.11038 7.18237 7.29146 8.75393 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.001898 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.414732 B =14748.313831 C =15819.263600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.051 3.949 3 N -0.384 5.384 4 O 0.094 5.906 5 C 0.030 3.970 6 C -0.284 4.284 7 C 0.598 3.402 8 O -0.566 6.566 9 N -0.705 5.705 10 C 0.147 3.853 11 H 0.070 0.930 12 C -0.156 4.156 13 C -0.122 4.122 14 C 0.118 3.882 15 N -0.709 5.709 16 C 0.531 3.469 17 O -0.570 6.570 18 C -0.129 4.129 19 S -0.158 6.158 20 C -0.543 4.543 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.276 1.276 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.276 0.724 32 H 0.415 0.585 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.420 0.580 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 4.317 -28.026 29.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 N -0.093 5.093 4 O 0.036 5.964 5 C -0.052 4.052 6 C -0.292 4.292 7 C 0.385 3.615 8 O -0.446 6.446 9 N -0.358 5.358 10 C 0.043 3.957 11 H 0.089 0.911 12 C -0.214 4.214 13 C -0.160 4.160 14 C -0.006 4.006 15 N -0.364 5.364 16 C 0.317 3.683 17 O -0.448 6.448 18 C -0.280 4.280 19 S 0.069 5.931 20 C -0.691 4.691 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.201 1.201 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.292 0.708 32 H 0.252 0.748 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.257 0.743 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.051 6.760 -26.763 29.049 hybrid contribution 1.650 -2.102 -0.069 2.673 sum -7.400 4.658 -26.832 28.221 Atomic orbital electron populations 1.20276 0.84415 1.04266 1.04395 1.25260 0.99842 0.86932 0.99139 1.73707 0.89901 1.24248 1.21465 1.84555 1.20895 1.24246 1.66685 1.27310 1.01109 0.83017 0.93754 1.22368 0.93880 0.95156 1.17780 1.16933 0.85349 0.83633 0.75593 1.90782 1.19861 1.82465 1.51519 1.45832 1.09572 1.05997 1.74378 1.20943 0.98284 0.78644 0.97850 0.91134 1.22103 1.02426 1.02195 0.94651 1.22054 0.99862 1.02117 0.91940 1.21403 0.88991 0.95758 0.94450 1.45681 1.36678 1.44345 1.09669 1.20094 0.83620 0.82016 0.82579 1.90708 1.54260 1.37729 1.62102 1.23373 1.00560 1.03660 1.00399 1.85645 1.45756 1.56689 1.05012 1.23238 1.19354 1.26767 0.99710 0.89721 1.26149 1.00473 0.97495 0.95259 1.70196 1.42358 1.38041 1.04296 0.84896 0.76818 0.77587 0.78589 1.17808 1.20009 1.20150 0.88842 0.89729 0.89652 0.70849 0.74771 0.90402 0.89977 0.93978 0.87355 0.87292 0.92215 0.93764 0.74270 0.87190 0.86840 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.15 71.24 0.72 -0.62 16 2 C 0.05 1.03 7.58 45.16 0.34 1.38 16 3 N -0.38 -8.13 12.01 -44.78 -0.54 -8.67 16 4 O 0.09 1.52 11.06 77.00 0.85 2.37 16 5 C 0.03 0.30 11.85 67.61 0.80 1.10 16 6 C -0.28 -4.76 6.47 -18.75 -0.12 -4.89 16 7 C 0.60 10.94 7.78 86.65 0.67 11.61 16 8 O -0.57 -14.69 15.35 -4.07 -0.06 -14.75 16 9 N -0.71 -7.58 4.53 -445.82 -2.02 -9.59 16 10 C 0.15 1.56 2.58 44.99 0.12 1.68 16 11 H 0.07 1.16 7.58 -2.39 -0.02 1.15 16 12 C -0.16 -1.30 9.48 71.98 0.68 -0.62 16 13 C -0.12 -0.85 4.87 30.60 0.15 -0.70 16 14 C 0.12 2.03 5.56 86.38 0.48 2.51 16 15 N -0.71 -14.32 5.56 -463.07 -2.57 -16.89 16 16 C 0.53 18.04 7.85 87.66 0.69 18.72 16 17 O -0.57 -25.52 15.86 -3.02 -0.05 -25.56 16 18 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 19 S -0.16 -8.59 20.57 -56.49 -1.16 -9.75 16 20 C -0.54 -30.29 9.50 67.95 0.65 -29.65 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.61 5.49 84.86 0.47 1.07 16 23 N -0.91 -55.60 13.22 21.65 0.29 -55.31 16 24 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.68 7.09 -2.39 -0.02 1.67 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.28 -0.60 7.68 -2.91 -0.02 -0.62 16 32 H 0.41 1.65 7.79 -92.71 -0.72 0.93 16 33 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 38 H 0.06 1.13 7.75 -2.39 -0.02 1.11 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.42 5.05 8.47 -92.71 -0.79 4.27 16 41 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 42 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -89.13 388.24 2.40 -86.73 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -0.45 Total: 9.33 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 6.09 Total: -2.71 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -4.84 Total: -90.47 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: 0.74 Total: -37.94 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -89.13 2.40 -86.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.454 kcal (2) G-P(sol) polarization free energy of solvation -89.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds