Wall clock time and date at job start Sat Apr 11 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34254 * 126.52758 * 2 1 4 4 C 1.34046 * 108.23283 * 179.97438 * 3 2 1 5 5 N 1.29942 * 109.23787 * 359.74536 * 4 3 2 6 6 C 1.36067 * 108.47874 * 0.40664 * 5 4 3 7 7 C 1.47413 * 126.44880 * 179.85983 * 6 5 4 8 8 O 1.21614 * 120.00007 * 179.68552 * 7 6 5 9 9 N 1.34773 * 119.99980 * 359.68862 * 7 6 5 10 10 C 1.46505 * 119.99859 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46654 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47009 * 304.99085 * 12 11 10 14 14 C 1.53008 * 109.46508 * 184.99930 * 12 11 10 15 15 N 1.46497 * 109.47201 * 64.99997 * 12 11 10 16 16 C 1.34777 * 119.99525 * 204.99403 * 15 12 11 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 12 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 12 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.08994 * 109.47221 * 270.04761 * 1 2 3 29 29 H 1.09004 * 109.47210 * 30.04477 * 1 2 3 30 30 H 1.09000 * 109.47420 * 150.03907 * 1 2 3 31 31 H 1.07998 * 125.38434 * 180.02562 * 4 3 2 32 32 H 0.97001 * 120.00395 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47046 * 60.00177 * 10 9 7 34 34 H 1.09001 * 109.47502 * 299.99905 * 10 9 7 35 35 H 1.09000 * 109.47254 * 60.00103 * 11 10 9 36 36 H 1.09001 * 109.46763 * 300.00156 * 11 10 9 37 37 H 1.08994 * 109.47201 * 299.99808 * 14 12 11 38 38 H 1.08995 * 109.47273 * 60.00263 * 14 12 11 39 39 H 1.08998 * 109.46811 * 179.97438 * 14 12 11 40 40 H 0.97000 * 120.00580 * 25.00149 * 15 12 11 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6580 0.0006 5 7 3.6002 -0.6412 0.0064 6 6 2.3169 -1.0937 0.0006 7 6 1.8853 -2.5032 0.0012 8 8 0.7002 -2.7762 0.0013 9 7 2.8040 -3.4893 0.0017 10 6 2.3750 -4.8901 0.0029 11 6 3.6050 -5.8001 0.0039 12 6 3.1569 -7.2631 0.0046 13 1 2.4867 -7.4374 0.8463 14 6 4.3817 -8.1714 0.1313 15 7 2.4563 -7.5597 -1.2473 16 6 1.5568 -8.5623 -1.2949 17 8 1.3271 -9.2186 -0.3011 18 6 0.8316 -8.8635 -2.5811 19 16 -0.3057 -10.2477 -2.3225 20 6 -0.9988 -10.3799 -3.9370 21 1 -0.6791 -9.7068 -4.7188 22 6 -1.9550 -11.3498 -4.2046 23 7 -2.4724 -11.4489 -5.4109 24 14 -2.5075 -12.5146 -2.8527 25 1 -3.6657 -11.9252 -2.1343 26 1 -2.9054 -13.8142 -3.4510 27 1 -1.3906 -12.7304 -1.8982 28 1 -0.3633 0.0009 1.0276 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3634 -0.8903 -0.5132 31 1 4.4489 1.2977 0.0011 32 1 3.7493 -3.2716 0.0020 33 1 1.7771 -5.0877 -0.8868 34 1 1.7776 -5.0864 0.8932 35 1 4.2026 -5.6024 0.8938 36 1 4.2028 -5.6039 -0.8861 37 1 5.0519 -7.9971 -0.7103 38 1 4.9029 -7.9507 1.0627 39 1 4.0624 -9.2136 0.1322 40 1 2.6398 -7.0347 -2.0421 41 1 0.2685 -7.9846 -2.8952 42 1 1.5547 -9.1268 -3.3530 43 1 -3.1408 -12.1265 -5.5977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075820973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:16 Heat of formation + Delta-G solvation = -63.501706 kcal Electronic energy + Delta-G solvation = -26001.426688 eV Core-core repulsion = 21981.371560 eV Total energy + Delta-G solvation = -4020.055128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.91638 -39.95773 -39.41059 -36.71719 -35.35253 -34.69813 -32.83469 -32.41745 -31.91294 -29.71004 -28.59978 -27.70381 -25.59122 -24.84499 -23.38584 -22.13739 -21.65808 -20.79304 -20.40678 -18.66788 -17.82183 -17.38308 -16.69033 -16.64604 -16.36069 -16.00618 -15.53282 -15.17508 -14.99327 -14.93142 -14.50225 -14.28876 -13.80716 -13.72869 -13.60181 -13.47083 -13.36149 -12.95812 -12.86922 -12.77300 -12.25102 -12.03980 -11.94910 -11.71180 -11.59271 -11.30950 -11.24195 -11.13515 -10.98492 -10.57797 -10.42672 -9.83529 -9.54930 -9.48747 -9.26738 -9.01254 -8.95705 -8.47518 -6.88999 -6.26627 -3.98043 0.64573 1.56986 2.07486 2.74613 2.78863 2.94109 2.99667 3.32162 3.36316 3.52493 3.55085 3.67717 4.16129 4.33248 4.35350 4.42856 4.64482 4.70792 4.72453 4.79486 4.94499 5.04213 5.12411 5.19735 5.23306 5.30697 5.35244 5.37750 5.54300 5.56490 5.60126 5.62154 5.74239 5.79588 5.94364 6.04585 6.06928 6.12878 6.58168 6.86444 7.20496 7.62192 7.82757 7.96466 8.44095 8.51477 9.19612 10.82610 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.002022 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.654267 B =13840.937090 C =15181.035752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.049 3.951 3 O -0.200 6.200 4 C 0.175 3.825 5 N -0.465 5.465 6 C -0.082 4.082 7 C 0.601 3.399 8 O -0.528 6.528 9 N -0.714 5.714 10 C 0.117 3.883 11 C -0.138 4.138 12 C 0.147 3.853 13 H 0.092 0.908 14 C -0.163 4.163 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.256 0.744 32 H 0.408 0.592 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.479 25.968 11.933 32.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 O -0.086 6.086 4 C -0.054 4.054 5 N -0.194 5.194 6 C -0.202 4.202 7 C 0.386 3.614 8 O -0.405 6.405 9 N -0.365 5.365 10 C -0.007 4.007 11 C -0.176 4.176 12 C 0.042 3.958 13 H 0.110 0.890 14 C -0.221 4.221 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.271 0.729 32 H 0.243 0.757 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.651 24.186 13.481 31.807 hybrid contribution 0.181 1.131 -1.284 1.721 sum 15.832 25.318 12.197 32.255 Atomic orbital electron populations 1.20658 0.82369 1.05727 1.04913 1.23839 0.95326 0.83288 0.98326 1.84394 1.18591 1.36298 1.69332 1.28009 0.85322 0.91169 1.00892 1.70711 1.21694 1.10272 1.16708 1.21466 0.88897 0.95574 1.14251 1.16687 0.85516 0.82585 0.76579 1.90841 1.16182 1.83181 1.50286 1.45762 1.10164 1.05984 1.74575 1.21483 0.97035 0.78580 1.03553 1.22112 0.97565 0.93996 1.03942 1.20788 0.94282 0.92337 0.88413 0.89004 1.22171 0.97216 1.00995 1.01737 1.46096 1.43411 1.36212 1.13132 1.20264 0.78485 0.79191 0.90176 1.90697 1.63747 1.48554 1.36280 1.23289 1.02157 1.04564 0.97554 1.84772 1.49082 1.38755 1.18923 1.22322 1.27480 1.22508 0.94520 0.89404 1.24720 0.94630 0.96422 0.95603 1.69942 1.27735 1.34187 1.19869 0.86728 0.81460 0.80797 0.82814 1.19203 1.19984 1.15933 0.88781 0.89918 0.86714 0.72882 0.75662 0.90574 0.90809 0.89589 0.90454 0.92437 0.91804 0.91474 0.76736 0.88498 0.88517 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 9.88 36.00 0.36 -0.18 16 2 C 0.05 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.20 -1.42 10.73 6.53 0.07 -1.35 16 4 C 0.17 0.94 13.19 51.96 0.69 1.63 16 5 N -0.46 -3.87 11.06 -11.48 -0.13 -4.00 16 6 C -0.08 -0.81 6.99 -83.02 -0.58 -1.39 16 7 C 0.60 6.81 7.81 -12.53 -0.10 6.71 16 8 O -0.53 -7.42 14.80 5.27 0.08 -7.34 16 9 N -0.71 -6.45 5.55 -61.38 -0.34 -6.79 16 10 C 0.12 1.08 5.56 -4.04 -0.02 1.05 16 11 C -0.14 -0.96 4.87 -26.73 -0.13 -1.09 16 12 C 0.15 1.49 2.57 -67.93 -0.17 1.31 16 13 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 14 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 15 N -0.73 -8.82 4.53 -53.80 -0.24 -9.07 16 16 C 0.53 9.26 7.81 -10.98 -0.09 9.17 16 17 O -0.52 -10.96 15.52 5.55 0.09 -10.87 16 18 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.81 13.97 55.49 0.78 -26.03 16 24 Si 0.86 22.01 27.74 -169.99 -4.72 17.30 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.11 0.96 6.48 -51.93 -0.34 0.63 16 31 H 0.26 0.01 8.06 -52.49 -0.42 -0.41 16 32 H 0.41 2.96 8.20 -40.82 -0.33 2.62 16 33 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.40 3.78 8.60 -40.82 -0.35 3.43 16 41 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -37.68 385.14 -6.18 -43.86 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.05 Total: 2.25 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 0.48 Total: 1.85 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.06 Total: -45.89 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.23 Total: -19.56 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.30 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.68 -6.18 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075820973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.645 kcal (2) G-P(sol) polarization free energy of solvation -37.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds