Wall clock time and date at job start Sat Apr 11 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34254 * 126.52758 * 2 1 4 4 C 1.34046 * 108.23283 * 179.97438 * 3 2 1 5 5 N 1.29942 * 109.23787 * 359.74536 * 4 3 2 6 6 C 1.36067 * 108.47874 * 0.40664 * 5 4 3 7 7 C 1.47413 * 126.44880 * 179.85983 * 6 5 4 8 8 O 1.21614 * 120.00007 * 179.68552 * 7 6 5 9 9 N 1.34773 * 119.99980 * 359.68862 * 7 6 5 10 10 C 1.46505 * 119.99859 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46654 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47009 * 304.99085 * 12 11 10 14 14 C 1.53008 * 109.46508 * 184.99930 * 12 11 10 15 15 N 1.46497 * 109.47201 * 64.99997 * 12 11 10 16 16 C 1.34777 * 119.99525 * 204.99403 * 15 12 11 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 12 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 12 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.08994 * 109.47221 * 270.04761 * 1 2 3 29 29 H 1.09004 * 109.47210 * 30.04477 * 1 2 3 30 30 H 1.09000 * 109.47420 * 150.03907 * 1 2 3 31 31 H 1.07998 * 125.38434 * 180.02562 * 4 3 2 32 32 H 0.97001 * 120.00395 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47046 * 60.00177 * 10 9 7 34 34 H 1.09001 * 109.47502 * 299.99905 * 10 9 7 35 35 H 1.09000 * 109.47254 * 60.00103 * 11 10 9 36 36 H 1.09001 * 109.46763 * 300.00156 * 11 10 9 37 37 H 1.08994 * 109.47201 * 299.99808 * 14 12 11 38 38 H 1.08995 * 109.47273 * 60.00263 * 14 12 11 39 39 H 1.08998 * 109.46811 * 179.97438 * 14 12 11 40 40 H 0.97000 * 120.00580 * 25.00149 * 15 12 11 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6580 0.0006 5 7 3.6002 -0.6412 0.0064 6 6 2.3169 -1.0937 0.0006 7 6 1.8853 -2.5032 0.0012 8 8 0.7002 -2.7762 0.0013 9 7 2.8040 -3.4893 0.0017 10 6 2.3750 -4.8901 0.0029 11 6 3.6050 -5.8001 0.0039 12 6 3.1569 -7.2631 0.0046 13 1 2.4867 -7.4374 0.8463 14 6 4.3817 -8.1714 0.1313 15 7 2.4563 -7.5597 -1.2473 16 6 1.5568 -8.5623 -1.2949 17 8 1.3271 -9.2186 -0.3011 18 6 0.8316 -8.8635 -2.5811 19 16 -0.3057 -10.2477 -2.3225 20 6 -0.9988 -10.3799 -3.9370 21 1 -0.6791 -9.7068 -4.7188 22 6 -1.9550 -11.3498 -4.2046 23 7 -2.4724 -11.4489 -5.4109 24 14 -2.5075 -12.5146 -2.8527 25 1 -3.6657 -11.9252 -2.1343 26 1 -2.9054 -13.8142 -3.4510 27 1 -1.3906 -12.7304 -1.8982 28 1 -0.3633 0.0009 1.0276 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3634 -0.8903 -0.5132 31 1 4.4489 1.2977 0.0011 32 1 3.7493 -3.2716 0.0020 33 1 1.7771 -5.0877 -0.8868 34 1 1.7776 -5.0864 0.8932 35 1 4.2026 -5.6024 0.8938 36 1 4.2028 -5.6039 -0.8861 37 1 5.0519 -7.9971 -0.7103 38 1 4.9029 -7.9507 1.0627 39 1 4.0624 -9.2136 0.1322 40 1 2.6398 -7.0347 -2.0421 41 1 0.2685 -7.9846 -2.8952 42 1 1.5547 -9.1268 -3.3530 43 1 -3.1408 -12.1265 -5.5977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075820973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:15 Heat of formation + Delta-G solvation = -94.936141 kcal Electronic energy + Delta-G solvation = -26002.789788 eV Core-core repulsion = 21981.371560 eV Total energy + Delta-G solvation = -4021.418228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.45904 -40.96152 -40.52492 -37.72486 -35.99215 -35.58137 -34.67857 -33.40220 -33.06873 -30.68684 -29.81476 -28.27850 -27.85522 -25.52645 -24.06497 -22.79203 -22.54984 -21.71707 -21.43059 -19.91389 -19.27518 -18.01340 -17.92741 -17.53536 -17.15623 -17.03684 -16.95258 -16.47980 -16.37976 -15.81413 -15.65179 -15.26685 -15.01948 -14.80134 -14.74380 -14.49833 -14.38593 -14.02341 -13.96251 -13.40448 -13.36770 -13.34400 -13.09176 -13.00869 -12.63547 -12.52134 -12.43738 -12.37489 -11.94982 -11.88079 -11.85994 -11.27822 -11.17777 -10.95555 -10.54177 -10.33517 -10.12468 -9.88807 -8.99790 -8.52133 -6.22721 0.01159 0.98932 1.02857 1.31054 1.46378 1.55114 1.55956 1.58995 2.04794 2.17606 2.23042 2.27697 2.71872 2.85959 3.07776 3.61065 3.68471 3.71389 3.87260 3.97235 4.05818 4.22318 4.22716 4.38353 4.42346 4.46276 4.48358 4.54334 4.60466 4.81934 4.84878 4.87338 4.98834 5.06880 5.12167 5.18033 5.31796 5.34295 5.54029 5.70140 6.10692 6.24174 6.48463 6.55865 6.92968 7.05210 7.22274 8.60313 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.002022 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.654267 B =13840.937090 C =15181.035752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.043 3.957 3 O -0.200 6.200 4 C 0.196 3.804 5 N -0.489 5.489 6 C -0.107 4.107 7 C 0.593 3.407 8 O -0.566 6.566 9 N -0.700 5.700 10 C 0.118 3.882 11 C -0.120 4.120 12 C 0.144 3.856 13 H 0.070 0.930 14 C -0.157 4.157 15 N -0.710 5.710 16 C 0.537 3.463 17 O -0.561 6.561 18 C -0.113 4.113 19 S -0.175 6.175 20 C -0.529 4.529 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.305 0.695 32 H 0.419 0.581 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.034 0.966 40 H 0.414 0.586 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.981 27.907 12.895 36.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.015 4.015 3 O -0.087 6.087 4 C -0.032 4.032 5 N -0.218 5.218 6 C -0.225 4.225 7 C 0.380 3.620 8 O -0.446 6.446 9 N -0.352 5.352 10 C -0.006 4.006 11 C -0.158 4.158 12 C 0.040 3.960 13 H 0.088 0.912 14 C -0.216 4.216 15 N -0.364 5.364 16 C 0.322 3.678 17 O -0.439 6.439 18 C -0.264 4.264 19 S 0.051 5.949 20 C -0.677 4.677 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.320 0.680 32 H 0.256 0.744 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.251 0.749 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.220 26.153 14.422 34.985 hybrid contribution -0.445 0.740 -1.603 1.821 sum 17.775 26.893 12.818 34.691 Atomic orbital electron populations 1.20648 0.81751 1.05715 1.05392 1.24055 0.96011 0.83429 0.97961 1.84425 1.19190 1.35717 1.69370 1.29204 0.85752 0.90912 0.97370 1.70685 1.20833 1.11766 1.18516 1.21364 0.90112 0.95039 1.16003 1.17021 0.85275 0.83663 0.76056 1.90815 1.17699 1.83918 1.52184 1.45651 1.10457 1.05486 1.73568 1.21416 0.97932 0.79252 1.01959 1.22006 0.96655 0.90677 1.06412 1.20970 0.94002 0.94702 0.86351 0.91203 1.22120 0.96954 0.98622 1.03861 1.45914 1.41491 1.34191 1.14783 1.19888 0.79172 0.80084 0.88631 1.90686 1.65460 1.50518 1.37226 1.23292 1.01397 1.02198 0.99531 1.84682 1.50988 1.42457 1.16736 1.22466 1.27675 1.21916 0.95608 0.92051 1.25585 0.94777 0.98024 0.97739 1.70018 1.28578 1.35287 1.21605 0.85853 0.80920 0.79392 0.80112 1.18795 1.18221 1.16029 0.88038 0.87791 0.88762 0.68004 0.74369 0.92216 0.92591 0.87025 0.88001 0.90663 0.89411 0.94696 0.74853 0.87310 0.86819 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.88 71.24 0.70 -0.35 16 2 C 0.04 0.70 7.44 25.19 0.19 0.88 16 3 O -0.20 -2.41 10.73 0.45 0.00 -2.41 16 4 C 0.20 1.53 13.19 130.52 1.72 3.25 16 5 N -0.49 -7.20 11.06 -305.15 -3.37 -10.57 16 6 C -0.11 -2.05 6.99 40.41 0.28 -1.76 16 7 C 0.59 13.52 7.81 86.66 0.68 14.20 16 8 O -0.57 -16.60 14.80 -4.08 -0.06 -16.66 16 9 N -0.70 -11.95 5.55 -466.36 -2.59 -14.54 16 10 C 0.12 2.07 5.56 86.38 0.48 2.55 16 11 C -0.12 -1.32 4.87 30.60 0.15 -1.17 16 12 C 0.14 2.66 2.57 45.00 0.12 2.77 16 13 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 14 C -0.16 -2.62 9.48 71.98 0.68 -1.93 16 15 N -0.71 -16.00 4.53 -442.52 -2.00 -18.00 16 16 C 0.54 18.39 7.81 87.66 0.68 19.08 16 17 O -0.56 -23.89 15.52 -3.04 -0.05 -23.94 16 18 C -0.11 -4.34 6.16 71.24 0.44 -3.90 16 19 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 20 C -0.53 -31.36 10.04 67.95 0.68 -30.68 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 22 C 0.04 2.63 5.50 84.86 0.47 3.10 16 23 N -0.92 -56.61 13.97 21.65 0.30 -56.31 16 24 Si 0.92 45.80 27.74 68.60 1.90 47.70 16 25 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 27 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.68 6.48 -2.39 -0.02 1.67 16 31 H 0.31 -1.39 8.06 -2.91 -0.02 -1.41 16 32 H 0.42 5.22 8.20 -92.71 -0.76 4.46 16 33 H 0.06 1.25 7.75 -2.39 -0.02 1.23 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.41 6.87 8.60 -92.71 -0.80 6.07 16 41 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 42 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 43 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -85.42 385.14 -0.18 -85.60 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -0.54 Total: 13.16 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 7.27 Total: 6.04 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -7.67 Total: -99.42 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.10 Total: -43.01 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.70 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -85.42 -0.18 -85.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075820973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.336 kcal (2) G-P(sol) polarization free energy of solvation -85.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds