Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 119.99555 * 2 1 4 4 H 1.48501 * 109.47119 * 269.99855 * 3 2 1 5 5 H 1.48501 * 109.47642 * 29.99933 * 3 2 1 6 6 H 1.48501 * 109.47217 * 149.99860 * 3 2 1 7 7 C 1.38799 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99713 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99870 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47182 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00372 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99994 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99873 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.76765 * 328.19221 * 14 13 11 16 16 C 1.55138 * 110.71159 * 91.39596 * 14 13 11 17 17 C 1.54906 * 101.65573 * 154.03495 * 16 14 13 18 18 N 1.47840 * 104.79510 * 322.92945 * 17 16 14 19 19 C 1.46897 * 110.99988 * 146.36231 * 18 17 16 20 20 H 1.09001 * 109.52638 * 299.16193 * 19 18 17 21 21 C 1.53245 * 109.51983 * 59.28530 * 19 18 17 22 22 C 1.53240 * 108.57311 * 175.44512 * 21 19 18 23 23 C 1.50586 * 109.23149 * 304.52451 * 22 21 19 24 24 O 1.21227 * 119.35898 * 209.03173 * 23 22 21 25 25 N 1.34140 * 121.28036 * 29.00365 * 23 22 21 26 26 C 1.34144 * 122.59199 * 359.48059 * 25 23 22 27 27 O 1.21217 * 119.36430 * 180.54196 * 26 25 23 28 28 C 1.47446 * 108.56768 * 24.09731 * 18 17 16 29 29 H 0.96999 * 120.00306 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46811 * 59.99471 * 10 9 7 31 31 H 1.09005 * 109.46744 * 300.00528 * 10 9 7 32 32 H 0.96994 * 119.99768 * 359.97438 * 13 11 10 33 33 H 1.09006 * 110.98929 * 35.93963 * 16 14 13 34 34 H 1.08997 * 110.99177 * 272.13111 * 16 14 13 35 35 H 1.08998 * 110.36925 * 204.09914 * 17 16 14 36 36 H 1.08993 * 110.46447 * 81.81035 * 17 16 14 37 37 H 1.09003 * 109.62242 * 295.24252 * 21 19 18 38 38 H 1.08998 * 109.62379 * 55.79586 * 21 19 18 39 39 H 1.08998 * 109.53926 * 184.56238 * 22 21 19 40 40 H 1.08998 * 109.48477 * 64.44790 * 22 21 19 41 41 H 0.97003 * 118.70325 * 179.49880 * 25 23 22 42 42 H 1.08996 * 109.88895 * 118.41939 * 28 18 17 43 43 H 1.09001 * 109.88694 * 239.60335 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7913 -5.5024 0.0000 13 7 2.8444 -6.3431 0.0003 14 6 2.3307 -7.7150 -0.0009 15 1 1.3834 -7.7735 0.5353 16 6 2.1729 -8.2406 -1.4520 17 6 2.3041 -9.7704 -1.2468 18 7 3.3265 -9.9232 -0.1899 19 6 3.0381 -11.0883 0.6570 20 1 2.0704 -10.9561 1.1411 21 6 3.0102 -12.3543 -0.2060 22 6 2.8220 -13.5668 0.7121 23 6 3.9055 -13.5700 1.7579 24 8 4.2787 -14.6252 2.2237 25 7 4.4661 -12.4282 2.1836 26 6 4.1106 -11.2264 1.7051 27 8 4.6630 -10.2324 2.1248 28 6 3.3640 -8.6850 0.6097 29 1 -0.4850 0.8400 0.0004 30 1 3.1246 -3.7312 0.8905 31 1 3.1246 -3.7312 -0.8895 32 1 3.8011 -6.1834 0.0006 33 1 2.9697 -7.8628 -2.0928 34 1 1.1939 -7.9833 -1.8562 35 1 2.6357 -10.2496 -2.1678 36 1 1.3543 -10.1938 -0.9202 37 1 2.1825 -12.2973 -0.9130 38 1 3.9515 -12.4492 -0.7472 39 1 2.8809 -14.4823 0.1236 40 1 1.8477 -13.5077 1.1973 41 1 5.1559 -12.4732 2.8640 42 1 3.1009 -8.9039 1.6446 43 1 4.3595 -8.2436 0.5633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269000392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -95.324645 kcal Electronic energy + Delta-G solvation = -26793.750963 eV Core-core repulsion = 22772.315889 eV Total energy + Delta-G solvation = -4021.435074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.12745 -40.09698 -39.27787 -38.26561 -36.11894 -34.79108 -33.39400 -32.43289 -31.07597 -29.64266 -28.42101 -26.91183 -25.47060 -24.48487 -23.52193 -21.60426 -21.42019 -20.40017 -19.80651 -18.26022 -17.91624 -17.54413 -17.05514 -16.69771 -16.34543 -15.90120 -15.50993 -15.29916 -14.98258 -14.90744 -14.80990 -14.64107 -13.95022 -13.77996 -13.50701 -13.39569 -13.22773 -13.03763 -12.74452 -12.65195 -12.38010 -12.11719 -11.85371 -11.66890 -11.53684 -11.07618 -11.06637 -11.02054 -10.86637 -10.76499 -10.74230 -10.47804 -9.82274 -9.43255 -9.07570 -8.95434 -8.86675 -8.24827 -6.50756 -6.22315 -3.92833 0.97107 2.12387 2.24417 2.96433 3.04788 3.19047 3.22184 3.27688 3.31280 3.44740 3.71571 3.83527 3.99028 4.19168 4.20207 4.35877 4.41896 4.53679 4.57379 4.83914 4.95864 4.99298 5.01264 5.08799 5.12981 5.19824 5.27656 5.34984 5.48291 5.57944 5.63817 5.69292 5.85651 5.89168 5.97320 6.14203 6.20560 6.37416 6.43591 6.63039 6.83501 7.29171 7.59274 7.68587 8.34830 8.58295 9.23181 10.85104 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.001838 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.021764 B =15227.484179 C =15662.589860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.518 6.518 13 N -0.728 5.728 14 C 0.123 3.877 15 H 0.096 0.904 16 C -0.142 4.142 17 C 0.044 3.956 18 N -0.510 5.510 19 C 0.057 3.943 20 H 0.090 0.910 21 C -0.118 4.118 22 C -0.142 4.142 23 C 0.525 3.475 24 O -0.505 6.505 25 N -0.674 5.674 26 C 0.530 3.470 27 O -0.481 6.481 28 C 0.045 3.955 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.400 0.600 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.414 0.586 42 H 0.073 0.927 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 -28.522 -1.190 29.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.393 6.393 13 N -0.382 5.382 14 C 0.016 3.984 15 H 0.114 0.886 16 C -0.181 4.181 17 C -0.083 4.083 18 N -0.235 5.235 19 C -0.055 4.055 20 H 0.108 0.892 21 C -0.156 4.156 22 C -0.182 4.182 23 C 0.314 3.686 24 O -0.377 6.377 25 N -0.340 5.340 26 C 0.317 3.683 27 O -0.351 6.351 28 C -0.083 4.083 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.235 0.765 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.253 0.747 42 H 0.091 0.909 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.946 -28.830 -1.091 29.457 hybrid contribution 2.019 1.470 0.750 2.608 sum 7.965 -27.359 -0.342 28.497 Atomic orbital electron populations 1.70017 1.05946 1.27451 1.46905 1.24994 0.95036 0.99040 0.94537 0.86164 0.79423 0.81544 0.78348 1.20271 1.20757 1.19686 1.22871 0.94928 0.91638 1.58908 0.90904 1.85370 1.04948 0.96353 1.96728 1.23535 1.06591 0.95295 1.05019 1.20335 0.86523 0.86308 0.74765 1.90691 1.15379 1.85584 1.47605 1.45931 1.09985 1.04703 1.77549 1.22161 0.98169 0.81974 0.96065 0.88625 1.23154 1.03648 0.93720 0.97580 1.23095 0.93025 0.97114 0.95076 1.63573 1.46981 1.01476 1.11507 1.21927 0.96103 0.94340 0.93164 0.89245 1.21833 1.05696 0.90148 0.97936 1.21953 0.98110 1.01927 0.96221 1.21031 0.82528 0.82664 0.82412 1.90809 1.60732 1.30185 1.55996 1.44860 1.40083 1.07828 1.41185 1.20720 0.83340 0.82233 0.82005 1.90809 1.51776 1.35743 1.56795 1.23135 1.00120 0.88579 0.96444 0.92193 0.89153 0.89155 0.76501 0.89973 0.89746 0.89291 0.92649 0.88296 0.89128 0.86241 0.86871 0.74653 0.90876 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 11 C 0.53 9.68 7.85 -10.99 -0.09 9.60 16 12 O -0.52 -11.37 15.51 5.55 0.09 -11.28 16 13 N -0.73 -9.43 5.18 -52.04 -0.27 -9.70 16 14 C 0.12 1.36 3.31 -66.11 -0.22 1.14 16 15 H 0.10 1.23 7.55 -51.93 -0.39 0.83 16 16 C -0.14 -1.32 6.76 -24.59 -0.17 -1.48 16 17 C 0.04 0.28 5.49 -2.30 -0.01 0.26 16 18 N -0.51 -3.73 5.01 -224.60 -1.12 -4.85 16 19 C 0.06 0.31 1.78 -68.79 -0.12 0.19 16 20 H 0.09 0.40 8.11 -51.93 -0.42 -0.03 16 21 C -0.12 -0.32 5.15 -26.48 -0.14 -0.46 16 22 C -0.14 -0.35 6.07 -27.81 -0.17 -0.52 16 23 C 0.52 3.16 7.75 -11.33 -0.09 3.07 16 24 O -0.50 -4.88 17.87 5.60 0.10 -4.78 16 25 N -0.67 -4.15 5.09 -11.75 -0.06 -4.21 16 26 C 0.53 3.93 7.44 -11.32 -0.08 3.84 16 27 O -0.48 -5.18 14.58 5.61 0.08 -5.10 16 28 C 0.05 0.42 4.93 -2.83 -0.01 0.41 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 31 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 32 H 0.40 4.21 8.37 -40.82 -0.34 3.87 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.28 7.58 -51.93 -0.39 -0.11 16 37 H 0.10 0.12 7.23 -51.93 -0.38 -0.26 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.11 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.41 2.43 8.79 -40.82 -0.36 2.07 16 42 H 0.07 0.74 6.25 -51.93 -0.32 0.42 16 43 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -37.25 368.39 -8.75 -46.00 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.93 Total: 0.92 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.68 Total: 0.29 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.72 Total: -44.11 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.27 Total: -21.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.25 -8.75 -46.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269000392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.327 kcal (2) G-P(sol) polarization free energy of solvation -37.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds