Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 119.99555 * 2 1 4 4 H 1.48501 * 109.47119 * 269.99855 * 3 2 1 5 5 H 1.48501 * 109.47642 * 29.99933 * 3 2 1 6 6 H 1.48501 * 109.47217 * 149.99860 * 3 2 1 7 7 C 1.38799 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99713 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99870 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47182 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00372 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99994 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99873 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.76765 * 328.19221 * 14 13 11 16 16 C 1.55138 * 110.71159 * 91.39596 * 14 13 11 17 17 C 1.54906 * 101.65573 * 154.03495 * 16 14 13 18 18 N 1.47840 * 104.79510 * 322.92945 * 17 16 14 19 19 C 1.46897 * 110.99988 * 146.36231 * 18 17 16 20 20 H 1.09001 * 109.52638 * 299.16193 * 19 18 17 21 21 C 1.53245 * 109.51983 * 59.28530 * 19 18 17 22 22 C 1.53240 * 108.57311 * 175.44512 * 21 19 18 23 23 C 1.50586 * 109.23149 * 304.52451 * 22 21 19 24 24 O 1.21227 * 119.35898 * 209.03173 * 23 22 21 25 25 N 1.34140 * 121.28036 * 29.00365 * 23 22 21 26 26 C 1.34144 * 122.59199 * 359.48059 * 25 23 22 27 27 O 1.21217 * 119.36430 * 180.54196 * 26 25 23 28 28 C 1.47446 * 108.56768 * 24.09731 * 18 17 16 29 29 H 0.96999 * 120.00306 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46811 * 59.99471 * 10 9 7 31 31 H 1.09005 * 109.46744 * 300.00528 * 10 9 7 32 32 H 0.96994 * 119.99768 * 359.97438 * 13 11 10 33 33 H 1.09006 * 110.98929 * 35.93963 * 16 14 13 34 34 H 1.08997 * 110.99177 * 272.13111 * 16 14 13 35 35 H 1.08998 * 110.36925 * 204.09914 * 17 16 14 36 36 H 1.08993 * 110.46447 * 81.81035 * 17 16 14 37 37 H 1.09003 * 109.62242 * 295.24252 * 21 19 18 38 38 H 1.08998 * 109.62379 * 55.79586 * 21 19 18 39 39 H 1.08998 * 109.53926 * 184.56238 * 22 21 19 40 40 H 1.08998 * 109.48477 * 64.44790 * 22 21 19 41 41 H 0.97003 * 118.70325 * 179.49880 * 25 23 22 42 42 H 1.08996 * 109.88895 * 118.41939 * 28 18 17 43 43 H 1.09001 * 109.88694 * 239.60335 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7913 -5.5024 0.0000 13 7 2.8444 -6.3431 0.0003 14 6 2.3307 -7.7150 -0.0009 15 1 1.3834 -7.7735 0.5353 16 6 2.1729 -8.2406 -1.4520 17 6 2.3041 -9.7704 -1.2468 18 7 3.3265 -9.9232 -0.1899 19 6 3.0381 -11.0883 0.6570 20 1 2.0704 -10.9561 1.1411 21 6 3.0102 -12.3543 -0.2060 22 6 2.8220 -13.5668 0.7121 23 6 3.9055 -13.5700 1.7579 24 8 4.2787 -14.6252 2.2237 25 7 4.4661 -12.4282 2.1836 26 6 4.1106 -11.2264 1.7051 27 8 4.6630 -10.2324 2.1248 28 6 3.3640 -8.6850 0.6097 29 1 -0.4850 0.8400 0.0004 30 1 3.1246 -3.7312 0.8905 31 1 3.1246 -3.7312 -0.8895 32 1 3.8011 -6.1834 0.0006 33 1 2.9697 -7.8628 -2.0928 34 1 1.1939 -7.9833 -1.8562 35 1 2.6357 -10.2496 -2.1678 36 1 1.3543 -10.1938 -0.9202 37 1 2.1825 -12.2973 -0.9130 38 1 3.9515 -12.4492 -0.7472 39 1 2.8809 -14.4823 0.1236 40 1 1.8477 -13.5077 1.1973 41 1 5.1559 -12.4732 2.8640 42 1 3.1009 -8.9039 1.6446 43 1 4.3595 -8.2436 0.5633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269000392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -126.673506 kcal Electronic energy + Delta-G solvation = -26795.110352 eV Core-core repulsion = 22772.315889 eV Total energy + Delta-G solvation = -4022.794463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.65408 -41.01764 -40.17696 -39.15680 -36.71963 -35.65353 -34.58689 -34.14827 -31.88543 -30.76286 -29.26727 -27.80608 -27.48156 -24.88091 -24.04559 -22.40606 -22.23185 -21.60329 -20.22347 -19.85057 -18.79827 -18.16956 -17.95480 -17.72885 -17.27273 -16.88024 -16.61737 -16.38322 -16.26645 -15.84495 -15.76827 -15.50522 -15.16124 -14.75836 -14.51166 -14.34392 -14.11212 -13.88516 -13.69564 -13.61098 -13.27987 -13.16705 -12.91189 -12.86596 -12.62384 -12.43925 -12.35475 -12.04161 -11.84500 -11.72381 -11.36406 -11.32006 -11.14491 -11.12852 -10.94874 -10.28436 -10.08222 -9.47502 -8.66464 -8.35002 -6.12730 0.43872 1.26524 1.42192 1.46419 1.57013 1.59570 1.64142 1.76292 2.22390 2.28003 2.73718 2.98403 2.99088 3.31639 3.42082 3.59655 3.65469 3.81522 3.97115 3.98075 4.04483 4.12040 4.29568 4.31114 4.36471 4.42249 4.51260 4.67649 4.75277 4.88195 4.93048 4.95977 5.02413 5.10034 5.14678 5.15642 5.41840 5.53032 5.68568 5.75018 5.91650 6.19670 6.33776 6.48386 6.76897 7.06457 7.22814 8.74135 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.001838 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.021764 B =15227.484179 C =15662.589860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.131 4.131 11 C 0.538 3.462 12 O -0.563 6.563 13 N -0.705 5.705 14 C 0.118 3.882 15 H 0.077 0.923 16 C -0.140 4.140 17 C 0.052 3.948 18 N -0.514 5.514 19 C 0.054 3.946 20 H 0.107 0.893 21 C -0.108 4.108 22 C -0.133 4.133 23 C 0.526 3.474 24 O -0.545 6.545 25 N -0.672 5.672 26 C 0.532 3.468 27 O -0.521 6.521 28 C 0.059 3.941 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.415 0.585 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.411 0.589 42 H 0.064 0.936 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.431 -29.855 -2.278 31.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.282 4.282 11 C 0.324 3.676 12 O -0.441 6.441 13 N -0.358 5.358 14 C 0.012 3.988 15 H 0.095 0.905 16 C -0.179 4.179 17 C -0.074 4.074 18 N -0.239 5.239 19 C -0.057 4.057 20 H 0.124 0.876 21 C -0.146 4.146 22 C -0.172 4.172 23 C 0.318 3.682 24 O -0.421 6.421 25 N -0.337 5.337 26 C 0.321 3.679 27 O -0.394 6.394 28 C -0.070 4.070 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.252 0.748 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.106 0.894 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.250 0.750 42 H 0.082 0.918 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.112 -30.216 -2.195 31.119 hybrid contribution 1.730 1.743 1.121 2.700 sum 8.843 -28.473 -1.074 29.834 Atomic orbital electron populations 1.70177 1.07909 1.28606 1.47988 1.26118 0.95985 1.03279 0.93756 0.84960 0.78170 0.76074 0.78818 1.19242 1.20272 1.18339 1.23210 0.95344 0.92093 1.58869 0.90009 1.85513 1.10404 0.99091 1.97043 1.23382 1.03628 0.94517 1.06717 1.20014 0.86246 0.86551 0.74822 1.90679 1.17208 1.86016 1.50155 1.45713 1.10173 1.04632 1.75305 1.22334 0.97930 0.80857 0.97727 0.90479 1.23100 1.02861 0.96169 0.95772 1.23146 0.93831 0.94772 0.95679 1.63593 1.47730 1.00970 1.11613 1.22116 0.95741 0.94832 0.93049 0.87591 1.21845 1.06763 0.88293 0.97682 1.22052 0.97431 1.02571 0.95191 1.21787 0.82498 0.81631 0.82327 1.90799 1.62197 1.31429 1.57655 1.44927 1.39890 1.07924 1.40920 1.21176 0.83148 0.81762 0.81832 1.90795 1.53397 1.36994 1.58237 1.22917 0.98769 0.89159 0.96114 0.91980 0.87486 0.87201 0.74781 0.90041 0.91074 0.86974 0.90698 0.85523 0.89415 0.84538 0.84512 0.75002 0.91792 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.82 13.22 21.65 0.29 -55.53 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 10 C -0.13 -5.19 6.16 71.23 0.44 -4.75 16 11 C 0.54 19.49 7.85 87.65 0.69 20.18 16 12 O -0.56 -25.31 15.51 -3.04 -0.05 -25.36 16 13 N -0.70 -17.71 5.18 -436.96 -2.26 -19.97 16 14 C 0.12 2.50 3.31 46.17 0.15 2.66 16 15 H 0.08 1.98 7.55 -2.39 -0.02 1.96 16 16 C -0.14 -2.37 6.76 31.98 0.22 -2.15 16 17 C 0.05 0.48 5.49 86.77 0.48 0.96 16 18 N -0.51 -6.21 5.01 -864.50 -4.33 -10.54 16 19 C 0.05 0.44 1.78 44.22 0.08 0.52 16 20 H 0.11 0.58 8.11 -2.39 -0.02 0.56 16 21 C -0.11 -0.16 5.15 30.76 0.16 0.00 16 22 C -0.13 -0.18 6.07 29.89 0.18 0.00 16 23 C 0.53 5.52 7.75 87.72 0.68 6.20 16 24 O -0.55 -10.19 17.87 -2.87 -0.05 -10.24 16 25 N -0.67 -7.77 5.09 -428.64 -2.18 -9.95 16 26 C 0.53 7.27 7.44 87.72 0.65 7.92 16 27 O -0.52 -11.12 14.58 -2.84 -0.04 -11.16 16 28 C 0.06 1.03 4.93 86.65 0.43 1.46 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 32 H 0.41 8.10 8.37 -92.71 -0.78 7.32 16 33 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.44 7.58 -2.39 -0.02 0.43 16 37 H 0.13 -0.40 7.23 -2.39 -0.02 -0.42 16 38 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.14 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.41 4.92 8.79 -92.71 -0.81 4.10 16 42 H 0.06 1.26 6.25 -2.39 -0.01 1.24 16 43 H 0.08 1.59 7.69 -2.39 -0.02 1.57 16 Total: -1.00 -84.86 368.39 -3.03 -87.89 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -0.52 Total: 14.95 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.26 Total: 3.58 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -8.49 Total: -96.00 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.14 Total: -46.76 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -84.86 -3.03 -87.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269000392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.788 kcal (2) G-P(sol) polarization free energy of solvation -84.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds