Wall clock time and date at job start Sat Apr 11 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46973 * 300.86281 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47299 * 179.97438 * 5 4 3 7 7 C 1.46916 * 124.37789 * 89.99169 * 6 5 4 8 8 C 1.54762 * 105.53496 * 196.74043 * 7 6 5 9 9 C 1.53368 * 101.44054 * 335.70668 * 8 7 6 10 10 C 1.53889 * 111.15200 * 145.08552 * 9 8 7 11 11 C 1.55147 * 101.44703 * 154.65905 * 10 9 8 12 12 N 1.47534 * 104.97461 * 324.25005 * 11 10 9 13 13 S 1.65597 * 125.67086 * 203.87438 * 12 11 10 14 14 O 1.42098 * 106.40059 * 23.57209 * 13 12 11 15 15 O 1.42104 * 106.40138 * 156.48759 * 13 12 11 16 16 C 1.76204 * 107.22273 * 270.02895 * 13 12 11 17 17 H 1.08001 * 119.99667 * 0.02562 * 16 13 12 18 18 C 1.37876 * 120.00134 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99534 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 119.99970 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47561 * 89.99787 * 20 18 16 22 22 H 1.48501 * 109.47215 * 210.00298 * 20 18 16 23 23 H 1.48506 * 109.47255 * 329.99864 * 20 18 16 24 24 C 1.47349 * 108.65624 * 23.90472 * 12 11 10 25 25 C 1.34831 * 124.37694 * 269.69863 * 6 5 4 26 26 O 1.21283 * 125.18292 * 358.86996 * 25 6 5 27 27 H 1.09002 * 109.47120 * 180.86036 * 3 2 1 28 28 H 1.09001 * 109.46952 * 60.86174 * 3 2 1 29 29 H 1.09001 * 109.47194 * 299.99745 * 4 3 2 30 30 H 1.08992 * 109.47399 * 59.99917 * 4 3 2 31 31 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 32 32 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 33 33 H 1.09002 * 110.23344 * 315.75958 * 7 6 5 34 34 H 1.08997 * 110.22754 * 77.72319 * 7 6 5 35 35 H 1.09001 * 111.03119 * 93.74636 * 8 7 6 36 36 H 1.09000 * 111.02896 * 217.66825 * 8 7 6 37 37 H 1.09006 * 111.02744 * 272.69848 * 10 9 8 38 38 H 1.08993 * 111.03039 * 36.61845 * 10 9 8 39 39 H 1.08998 * 110.33406 * 205.37679 * 11 10 9 40 40 H 1.09001 * 110.42676 * 83.17691 * 11 10 9 41 41 H 0.97008 * 119.99280 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.97019 * 238.69267 * 24 12 11 43 43 H 1.08999 * 109.97097 * 117.42853 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7391 1.2383 5 6 4.6483 -0.7379 1.2386 6 7 5.1370 -1.4456 2.4245 7 6 5.4145 -2.8875 2.4744 8 6 5.4806 -3.2451 3.9787 9 6 5.8484 -1.8908 4.5974 10 6 5.1782 -1.7073 5.9705 11 6 6.1454 -0.7047 6.6536 12 7 7.4882 -1.0833 6.1738 13 16 8.9162 -0.7639 6.9491 14 8 8.5972 -0.5930 8.3233 15 8 9.8505 -1.7274 6.4821 16 6 9.4846 0.8009 6.3720 17 1 8.9076 1.3492 5.6420 18 6 10.6653 1.3258 6.8530 19 7 11.3675 0.6582 7.7423 20 14 11.2674 2.9849 6.2417 21 1 10.7245 4.0597 7.1109 22 1 12.7515 3.0183 6.2816 23 1 10.8049 3.1960 4.8463 24 6 7.3474 -1.7921 4.8898 25 6 5.3956 -0.8570 3.6097 26 8 5.2775 0.3274 3.8422 27 1 2.9709 1.0284 0.0154 28 1 2.9715 -0.4996 -0.8976 29 1 2.7547 -0.2389 2.1359 30 1 2.7554 -1.7667 1.2228 31 1 5.0122 -1.2379 0.3410 32 1 5.0109 0.2900 1.2542 33 1 4.6116 -3.4429 1.9897 34 1 6.3681 -3.1046 1.9930 35 1 4.5126 -3.5909 4.3414 36 1 6.2561 -3.9865 4.1708 37 1 4.1814 -1.2791 5.8651 38 1 5.1416 -2.6496 6.5170 39 1 6.0888 -0.8027 7.7377 40 1 5.9095 0.3162 6.3533 41 1 12.1984 1.0274 8.0805 42 1 7.7784 -2.7903 4.9664 43 1 7.8449 -1.2313 4.0985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275492458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:57 Heat of formation + Delta-G solvation = -94.047801 kcal Electronic energy + Delta-G solvation = -28083.738403 eV Core-core repulsion = 24062.358696 eV Total energy + Delta-G solvation = -4021.379706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14596 -37.73469 -37.11018 -36.45702 -35.21473 -34.59553 -33.93932 -33.04115 -31.79314 -29.52055 -28.13890 -27.40932 -26.06571 -24.11000 -22.98432 -21.88859 -21.04149 -19.06062 -18.70800 -18.03582 -17.47851 -16.65078 -16.42995 -16.06222 -15.99128 -15.36140 -14.92301 -14.81092 -14.33818 -14.22141 -13.95203 -13.80054 -13.61190 -13.42756 -13.28806 -13.01656 -12.82751 -12.67818 -12.38251 -12.24472 -12.10333 -11.96277 -11.94830 -11.79221 -11.42477 -11.19543 -11.18041 -11.13857 -10.92085 -10.71534 -10.56138 -10.30433 -10.27023 -10.16656 -9.55452 -9.20505 -8.90068 -8.89160 -8.12690 -6.65561 -5.26469 2.24359 2.31607 2.41815 2.57049 2.80891 3.10574 3.16722 3.24557 3.58205 4.09121 4.14141 4.23209 4.42989 4.46216 4.55903 4.64232 4.68583 4.71311 4.84991 4.93619 4.99863 5.05647 5.15074 5.24214 5.28197 5.47295 5.53992 5.63636 5.67805 5.69878 5.76185 5.82902 5.91550 5.99733 6.06998 6.19029 6.33812 6.40309 6.48610 6.87963 6.94763 7.18567 7.38132 7.47190 8.05846 8.15653 8.94248 10.27869 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.003028 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.360270 B = 9244.962825 C =10167.745207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.207 3.793 3 C -0.024 4.024 4 C -0.135 4.135 5 C 0.128 3.872 6 N -0.627 5.627 7 C 0.103 3.897 8 C -0.121 4.121 9 C -0.110 4.110 10 C -0.104 4.104 11 C 0.121 3.879 12 N -1.019 6.019 13 S 2.729 3.271 14 O -1.000 7.000 15 O -1.002 7.002 16 C -1.017 5.017 17 H 0.103 0.897 18 C 0.133 3.867 19 N -0.848 5.848 20 Si 0.920 3.080 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.263 1.263 24 C 0.154 3.846 25 C 0.536 3.464 26 O -0.507 6.507 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.290 0.710 42 H 0.077 0.923 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 -7.260 -14.999 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.111 4.111 3 C -0.064 4.064 4 C -0.175 4.175 5 C 0.006 3.994 6 N -0.362 5.362 7 C -0.020 4.020 8 C -0.159 4.159 9 C -0.115 4.115 10 C -0.143 4.143 11 C -0.005 4.005 12 N -0.855 5.855 13 S 2.831 3.169 14 O -0.991 6.991 15 O -0.993 6.993 16 C -1.151 5.151 17 H 0.121 0.879 18 C -0.085 4.085 19 N -0.478 5.478 20 Si 0.744 3.256 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.187 1.187 24 C 0.027 3.973 25 C 0.324 3.676 26 O -0.380 6.380 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.416 -7.169 -14.136 21.425 hybrid contribution 0.729 1.403 -0.800 1.772 sum -13.687 -5.766 -14.936 21.063 Atomic orbital electron populations 1.81254 1.13175 1.08740 1.08480 1.29203 0.95336 0.93241 0.93290 1.19231 0.81626 1.04582 1.01003 1.21970 0.96704 1.01399 0.97432 1.21298 0.92246 0.98679 0.87219 1.48382 1.66733 1.09374 1.11748 1.22183 1.01676 0.80459 0.97706 1.22595 1.03776 0.96031 0.93528 1.21593 0.98389 0.95151 0.96354 1.22558 0.98561 1.00650 0.92572 1.21920 0.81340 0.98169 0.99081 1.59244 1.21481 1.72071 1.32675 1.00092 0.69019 0.75629 0.72136 1.93355 1.83547 1.88471 1.33685 1.93350 1.59580 1.64062 1.82269 1.30629 1.17302 1.28361 1.38809 0.87913 1.24749 0.93789 0.98743 0.91181 1.69900 1.14694 1.38414 1.24801 0.86171 0.77922 0.81352 0.80155 1.19165 1.20016 1.18661 1.21188 0.91484 0.97669 0.86944 1.20281 0.75949 0.88473 0.82942 1.90739 1.51670 1.15426 1.80194 0.86920 0.87070 0.90456 0.90735 0.89787 0.89352 0.90385 0.90667 0.89480 0.88375 0.90246 0.89730 0.90216 0.91208 0.89944 0.90477 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.92 18.54 42.15 0.78 -4.14 16 2 C 0.21 1.55 15.43 -20.76 -0.32 1.23 16 3 C -0.02 -0.08 5.70 -29.52 -0.17 -0.24 16 4 C -0.13 -0.67 5.49 -26.73 -0.15 -0.82 16 5 C 0.13 0.77 5.95 -4.04 -0.02 0.74 16 6 N -0.63 -5.62 2.95 -172.54 -0.51 -6.12 16 7 C 0.10 0.65 7.37 -2.89 -0.02 0.62 16 8 C -0.12 -0.93 6.26 -25.61 -0.16 -1.09 16 9 C -0.11 -1.37 0.66 -155.33 -0.10 -1.47 16 10 C -0.10 -1.33 5.88 -25.13 -0.15 -1.47 16 11 C 0.12 2.13 6.87 -2.34 -0.02 2.11 16 12 N -1.02 -21.05 3.71 -111.69 -0.41 -21.46 16 13 S 2.73 73.54 5.22 -107.50 -0.56 72.98 16 14 O -1.00 -29.46 17.35 -57.17 -0.99 -30.45 16 15 O -1.00 -29.05 17.60 -57.17 -1.01 -30.06 16 16 C -1.02 -28.87 9.75 30.60 0.30 -28.57 16 17 H 0.10 2.77 7.81 -52.49 -0.41 2.36 16 18 C 0.13 3.79 5.46 -17.82 -0.10 3.69 16 19 N -0.85 -25.22 13.19 55.43 0.73 -24.49 16 20 Si 0.92 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 24 C 0.15 2.54 6.26 -3.55 -0.02 2.52 16 25 C 0.54 7.14 6.63 -11.31 -0.08 7.06 16 26 O -0.51 -8.75 16.78 5.56 0.09 -8.65 16 27 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.11 0.06 8.14 -51.93 -0.42 -0.37 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.64 7.93 -51.93 -0.41 0.23 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.53 7.94 -51.93 -0.41 0.12 16 36 H 0.10 0.66 7.43 -51.93 -0.39 0.28 16 37 H 0.08 0.90 8.00 -51.93 -0.42 0.49 16 38 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 39 H 0.08 1.40 7.79 -51.93 -0.40 1.00 16 40 H 0.07 1.28 7.66 -51.93 -0.40 0.89 16 41 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.08 1.16 7.41 -51.93 -0.39 0.78 16 43 H 0.06 1.06 7.83 -51.93 -0.41 0.66 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -40.60 377.10 -8.36 -48.97 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.14 Total: -2.67 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.00 Total: -15.69 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.59 Total: -56.22 kcal Atomic # 8 Polarization: -67.26 SS G_CDS: -1.91 Total: -69.16 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 73.54 SS G_CDS: -0.56 Total: 72.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -40.60 -8.36 -48.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275492458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.082 kcal (2) G-P(sol) polarization free energy of solvation -40.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds