Wall clock time and date at job start Sat Apr 11 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46973 * 300.86281 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47299 * 179.97438 * 5 4 3 7 7 C 1.46916 * 124.37789 * 89.99169 * 6 5 4 8 8 C 1.54762 * 105.53496 * 196.74043 * 7 6 5 9 9 C 1.53368 * 101.44054 * 335.70668 * 8 7 6 10 10 C 1.53889 * 111.15200 * 145.08552 * 9 8 7 11 11 C 1.55147 * 101.44703 * 154.65905 * 10 9 8 12 12 N 1.47534 * 104.97461 * 324.25005 * 11 10 9 13 13 S 1.65597 * 125.67086 * 203.87438 * 12 11 10 14 14 O 1.42098 * 106.40059 * 23.57209 * 13 12 11 15 15 O 1.42104 * 106.40138 * 156.48759 * 13 12 11 16 16 C 1.76204 * 107.22273 * 270.02895 * 13 12 11 17 17 H 1.08001 * 119.99667 * 0.02562 * 16 13 12 18 18 C 1.37876 * 120.00134 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99534 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 119.99970 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47561 * 89.99787 * 20 18 16 22 22 H 1.48501 * 109.47215 * 210.00298 * 20 18 16 23 23 H 1.48506 * 109.47255 * 329.99864 * 20 18 16 24 24 C 1.47349 * 108.65624 * 23.90472 * 12 11 10 25 25 C 1.34831 * 124.37694 * 269.69863 * 6 5 4 26 26 O 1.21283 * 125.18292 * 358.86996 * 25 6 5 27 27 H 1.09002 * 109.47120 * 180.86036 * 3 2 1 28 28 H 1.09001 * 109.46952 * 60.86174 * 3 2 1 29 29 H 1.09001 * 109.47194 * 299.99745 * 4 3 2 30 30 H 1.08992 * 109.47399 * 59.99917 * 4 3 2 31 31 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 32 32 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 33 33 H 1.09002 * 110.23344 * 315.75958 * 7 6 5 34 34 H 1.08997 * 110.22754 * 77.72319 * 7 6 5 35 35 H 1.09001 * 111.03119 * 93.74636 * 8 7 6 36 36 H 1.09000 * 111.02896 * 217.66825 * 8 7 6 37 37 H 1.09006 * 111.02744 * 272.69848 * 10 9 8 38 38 H 1.08993 * 111.03039 * 36.61845 * 10 9 8 39 39 H 1.08998 * 110.33406 * 205.37679 * 11 10 9 40 40 H 1.09001 * 110.42676 * 83.17691 * 11 10 9 41 41 H 0.97008 * 119.99280 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.97019 * 238.69267 * 24 12 11 43 43 H 1.08999 * 109.97097 * 117.42853 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7391 1.2383 5 6 4.6483 -0.7379 1.2386 6 7 5.1370 -1.4456 2.4245 7 6 5.4145 -2.8875 2.4744 8 6 5.4806 -3.2451 3.9787 9 6 5.8484 -1.8908 4.5974 10 6 5.1782 -1.7073 5.9705 11 6 6.1454 -0.7047 6.6536 12 7 7.4882 -1.0833 6.1738 13 16 8.9162 -0.7639 6.9491 14 8 8.5972 -0.5930 8.3233 15 8 9.8505 -1.7274 6.4821 16 6 9.4846 0.8009 6.3720 17 1 8.9076 1.3492 5.6420 18 6 10.6653 1.3258 6.8530 19 7 11.3675 0.6582 7.7423 20 14 11.2674 2.9849 6.2417 21 1 10.7245 4.0597 7.1109 22 1 12.7515 3.0183 6.2816 23 1 10.8049 3.1960 4.8463 24 6 7.3474 -1.7921 4.8898 25 6 5.3956 -0.8570 3.6097 26 8 5.2775 0.3274 3.8422 27 1 2.9709 1.0284 0.0154 28 1 2.9715 -0.4996 -0.8976 29 1 2.7547 -0.2389 2.1359 30 1 2.7554 -1.7667 1.2228 31 1 5.0122 -1.2379 0.3410 32 1 5.0109 0.2900 1.2542 33 1 4.6116 -3.4429 1.9897 34 1 6.3681 -3.1046 1.9930 35 1 4.5126 -3.5909 4.3414 36 1 6.2561 -3.9865 4.1708 37 1 4.1814 -1.2791 5.8651 38 1 5.1416 -2.6496 6.5170 39 1 6.0888 -0.8027 7.7377 40 1 5.9095 0.3162 6.3533 41 1 12.1984 1.0274 8.0805 42 1 7.7784 -2.7903 4.9664 43 1 7.8449 -1.2313 4.0985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275492458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:56 Heat of formation + Delta-G solvation = -126.181786 kcal Electronic energy + Delta-G solvation = -28085.131837 eV Core-core repulsion = 24062.358696 eV Total energy + Delta-G solvation = -4022.773141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.05800 -38.67091 -37.95476 -37.45232 -37.32203 -36.17783 -35.32048 -35.14882 -32.67344 -30.67442 -29.11277 -28.27645 -27.98822 -25.09857 -23.61689 -23.09175 -21.78499 -20.77424 -19.94881 -19.29991 -18.56537 -18.33849 -17.51855 -17.18112 -16.91982 -16.47670 -16.28297 -16.08118 -15.82619 -15.52927 -15.00557 -14.82905 -14.53998 -14.50389 -14.17956 -14.11727 -14.01467 -13.72421 -13.65954 -13.44852 -13.31618 -13.05292 -12.92121 -12.71540 -12.61280 -12.56435 -12.49772 -12.46161 -12.33785 -12.31655 -12.18828 -11.72145 -11.64511 -11.53774 -11.28447 -11.03003 -10.54740 -9.80040 -9.58201 -8.77554 -7.51357 0.24211 1.29173 1.30419 1.46576 1.54679 1.78395 1.87065 2.16233 2.18192 2.53416 2.84096 3.14321 3.32267 3.37904 3.56345 3.75682 3.92383 4.03026 4.12506 4.21304 4.33100 4.34317 4.37754 4.48358 4.59280 4.61015 4.66112 4.70280 4.75944 4.85700 4.89178 4.91335 4.95043 5.10002 5.13475 5.16694 5.24109 5.28030 5.33293 5.37023 5.74363 5.79496 5.87614 6.17479 6.65918 6.74995 7.26038 8.17590 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.003028 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.360270 B = 9244.962825 C =10167.745207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.235 3.765 3 C -0.017 4.017 4 C -0.125 4.125 5 C 0.121 3.879 6 N -0.618 5.618 7 C 0.099 3.901 8 C -0.114 4.114 9 C -0.108 4.108 10 C -0.091 4.091 11 C 0.109 3.891 12 N -1.022 6.022 13 S 2.739 3.261 14 O -1.037 7.037 15 O -1.032 7.032 16 C -1.045 5.045 17 H 0.106 0.894 18 C 0.072 3.928 19 N -0.891 5.891 20 Si 0.987 3.013 21 H -0.255 1.255 22 H -0.255 1.255 23 H -0.253 1.253 24 C 0.143 3.857 25 C 0.524 3.476 26 O -0.562 6.562 27 H 0.127 0.873 28 H 0.153 0.847 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.300 0.700 42 H 0.091 0.909 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.901 -8.426 -17.796 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.081 4.081 3 C -0.058 4.058 4 C -0.165 4.165 5 C 0.000 4.000 6 N -0.350 5.350 7 C -0.023 4.023 8 C -0.152 4.152 9 C -0.113 4.113 10 C -0.131 4.131 11 C -0.016 4.016 12 N -0.861 5.861 13 S 2.842 3.158 14 O -1.027 7.027 15 O -1.022 7.022 16 C -1.178 5.178 17 H 0.124 0.876 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.805 3.195 21 H -0.179 1.179 22 H -0.178 1.178 23 H -0.177 1.177 24 C 0.017 3.983 25 C 0.311 3.689 26 O -0.440 6.440 27 H 0.145 0.855 28 H 0.170 0.830 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.050 -8.390 -16.965 24.180 hybrid contribution 0.906 1.720 0.032 1.944 sum -14.143 -6.670 -16.933 23.049 Atomic orbital electron populations 1.81281 1.15567 1.11290 1.10997 1.29963 0.96008 0.91037 0.91073 1.19500 0.78604 1.05837 1.01812 1.21829 0.95818 1.02013 0.96860 1.21565 0.92808 0.98222 0.87407 1.48529 1.64822 1.10645 1.11052 1.22491 1.03876 0.78775 0.97121 1.22699 1.05411 0.93106 0.93957 1.21599 0.94978 0.98288 0.96452 1.22568 0.97771 1.00218 0.92499 1.22147 0.81133 0.99159 0.99188 1.58701 1.20812 1.72296 1.34249 0.99367 0.69746 0.75081 0.71651 1.93293 1.84490 1.88751 1.36183 1.93292 1.61738 1.64578 1.82592 1.30991 1.18122 1.29480 1.39160 0.87609 1.25972 0.93783 1.03265 0.91067 1.69968 1.15594 1.40616 1.26054 0.85182 0.78504 0.75821 0.79990 1.17936 1.17826 1.17693 1.21527 0.94978 0.97407 0.84388 1.20511 0.75986 0.87867 0.84537 1.90706 1.54341 1.17567 1.81389 0.85500 0.82955 0.93557 0.89400 0.85674 0.91092 0.86515 0.89499 0.87002 0.87075 0.88596 0.87178 0.91010 0.92904 0.88938 0.89054 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.28 18.54 20.01 0.37 -10.91 16 2 C 0.24 3.11 15.43 89.44 1.38 4.49 16 3 C -0.02 -0.05 5.70 28.79 0.16 0.11 16 4 C -0.13 -0.85 5.49 30.59 0.17 -0.68 16 5 C 0.12 1.04 5.95 86.38 0.51 1.56 16 6 N -0.62 -9.19 2.95 -818.16 -2.41 -11.60 16 7 C 0.10 0.77 7.37 86.90 0.64 1.41 16 8 C -0.11 -1.27 6.26 31.32 0.20 -1.07 16 9 C -0.11 -2.51 0.66 -52.71 -0.04 -2.54 16 10 C -0.09 -2.20 5.88 31.63 0.19 -2.02 16 11 C 0.11 3.96 6.87 86.92 0.60 4.56 16 12 N -1.02 -43.48 3.71 -507.28 -1.88 -45.37 16 13 S 2.74 153.64 5.22 -56.49 -0.29 153.34 16 14 O -1.04 -63.93 17.35 -128.00 -2.22 -66.15 16 15 O -1.03 -61.93 17.60 -128.00 -2.25 -64.19 16 16 C -1.04 -61.25 9.75 67.73 0.66 -60.59 16 17 H 0.11 5.91 7.81 -2.91 -0.02 5.89 16 18 C 0.07 4.18 5.46 84.65 0.46 4.64 16 19 N -0.89 -54.32 13.19 21.45 0.28 -54.04 16 20 Si 0.99 43.27 29.54 68.60 2.03 45.30 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 22 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.25 -10.61 7.11 99.48 0.71 -9.91 16 24 C 0.14 4.68 6.26 86.23 0.54 5.22 16 25 C 0.52 13.37 6.63 87.42 0.58 13.95 16 26 O -0.56 -19.84 16.78 -3.04 -0.05 -19.90 16 27 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.15 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.07 0.90 7.93 -2.39 -0.02 0.88 16 33 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.11 0.77 7.94 -2.39 -0.02 0.75 16 36 H 0.11 1.02 7.43 -2.39 -0.02 1.00 16 37 H 0.10 2.03 8.00 -2.38 -0.02 2.01 16 38 H 0.11 2.09 8.06 -2.39 -0.02 2.07 16 39 H 0.07 2.65 7.79 -2.39 -0.02 2.63 16 40 H 0.05 2.07 7.66 -2.39 -0.02 2.05 16 41 H 0.30 16.33 8.31 -92.70 -0.77 15.56 16 42 H 0.09 2.68 7.41 -2.39 -0.02 2.66 16 43 H 0.05 1.67 7.83 -2.39 -0.02 1.65 16 Total: -1.00 -96.21 377.10 0.64 -95.57 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.02 Total: 8.91 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 6.05 Total: -30.97 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -3.64 Total: -121.91 kcal Atomic # 8 Polarization: -145.71 SS G_CDS: -4.52 Total: -150.23 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 153.64 SS G_CDS: -0.29 Total: 153.34 kcal Total: -96.21 0.64 -95.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275492458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.615 kcal (2) G-P(sol) polarization free energy of solvation -96.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds