Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35455 * 128.00744 * 2 1 4 4 O 1.34036 * 106.44593 * 179.73877 * 3 2 1 5 5 N 1.20921 * 111.57107 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60286 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.80468 * 179.97438 * 6 5 4 8 8 N 1.46894 * 109.47827 * 270.00519 * 7 6 5 9 9 C 1.47477 * 111.00290 * 265.97124 * 8 7 6 10 10 C 1.53506 * 87.93585 * 221.29367 * 9 8 7 11 11 O 1.42906 * 114.34178 * 272.36469 * 10 9 8 12 12 C 1.52996 * 114.17371 * 139.66671 * 10 9 8 13 13 N 1.46500 * 109.46896 * 86.16070 * 12 10 9 14 14 C 1.34777 * 119.99801 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00052 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00206 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47314 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99897 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00505 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99963 * 180.02562 * 18 17 16 21 21 N 1.31637 * 119.99874 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99977 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46788 * 90.00177 * 22 20 18 24 24 H 1.48493 * 109.46965 * 210.00287 * 22 20 18 25 25 H 1.48499 * 109.47066 * 330.00426 * 22 20 18 26 26 C 1.47477 * 111.00557 * 169.99775 * 8 7 6 27 27 H 1.08994 * 109.47182 * 90.02944 * 1 2 3 28 28 H 1.08997 * 109.46838 * 210.02829 * 1 2 3 29 29 H 1.09000 * 109.47127 * 330.02654 * 1 2 3 30 30 H 1.08003 * 126.77421 * 359.72963 * 3 2 1 31 31 H 1.09007 * 109.46547 * 30.00388 * 7 6 5 32 32 H 1.09001 * 109.47538 * 149.99649 * 7 6 5 33 33 H 1.09001 * 113.47133 * 336.06162 * 9 8 7 34 34 H 1.09006 * 113.47933 * 106.52029 * 9 8 7 35 35 H 0.96697 * 113.99324 * 273.91772 * 11 10 9 36 36 H 1.09003 * 109.47472 * 206.16191 * 12 10 9 37 37 H 1.08999 * 109.47316 * 326.16119 * 12 10 9 38 38 H 0.96995 * 120.00122 * 359.97438 * 13 12 10 39 39 H 1.09003 * 109.47094 * 300.00373 * 16 14 13 40 40 H 1.08999 * 109.46757 * 59.99727 * 16 14 13 41 41 H 0.96999 * 119.99891 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.47436 * 253.46919 * 26 8 7 43 43 H 1.08995 * 113.47312 * 23.93395 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 0.0059 5 7 3.5878 -0.6345 0.0098 6 6 2.3776 -1.1140 0.0066 7 6 1.9827 -2.5683 0.0092 8 7 1.8596 -3.0449 -1.3748 9 6 0.4659 -2.9444 -1.8464 10 6 0.6507 -4.3154 -2.5118 11 8 1.1825 -4.2601 -3.8370 12 6 -0.5603 -5.2417 -2.3849 13 7 -1.5002 -4.9688 -3.4750 14 6 -2.6479 -5.6694 -3.5664 15 8 -2.9024 -6.5260 -2.7465 16 6 -3.6151 -5.3883 -4.6875 17 16 -5.0477 -6.4843 -4.5374 18 6 -5.9850 -5.9553 -5.9325 19 1 -5.6085 -5.1683 -6.5691 20 6 -7.2078 -6.5493 -6.2127 21 7 -7.9083 -6.1537 -7.2546 22 14 -7.8594 -7.9100 -5.1112 23 1 -8.6778 -7.3169 -4.0232 24 1 -8.6983 -8.8366 -5.9128 25 1 -6.7199 -8.6581 -4.5219 26 6 1.7094 -4.5114 -1.4175 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5134 30 1 2.0576 2.1094 -0.0041 31 1 2.7445 -3.1506 0.5276 32 1 1.0267 -2.6843 0.5199 33 1 -0.2669 -2.9486 -1.0395 34 1 0.3056 -2.1344 -2.5580 35 1 0.5135 -4.1366 -4.5243 36 1 -0.2314 -6.2795 -2.4400 37 1 -1.0528 -5.0670 -1.4283 38 1 -1.2968 -4.2834 -4.1305 39 1 -3.9437 -4.3505 -4.6322 40 1 -3.1229 -5.5630 -5.6442 41 1 -8.7626 -6.5690 -7.4507 42 1 2.6030 -5.0294 -1.7656 43 1 1.3085 -4.9337 -0.4961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278837916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = 22.323867 kcal Electronic energy + Delta-G solvation = -26489.752007 eV Core-core repulsion = 22473.418555 eV Total energy + Delta-G solvation = -4016.333452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.28611 -41.23092 -39.25915 -36.73612 -35.25297 -34.28931 -32.86682 -32.48565 -30.86971 -29.59360 -28.53685 -27.01256 -26.57715 -25.65048 -23.68026 -21.99473 -21.31582 -20.76776 -20.44904 -18.33706 -17.94136 -17.84025 -17.26797 -16.64817 -16.51739 -15.93546 -15.58225 -15.39785 -15.21722 -14.98566 -14.55340 -14.35485 -13.88316 -13.75009 -13.70603 -13.61809 -13.31777 -13.18518 -12.84392 -12.83675 -12.73055 -12.45659 -12.05090 -11.94268 -11.36742 -11.32058 -11.23004 -11.05261 -10.67445 -10.49681 -10.17611 -9.91408 -9.74678 -9.70482 -9.43953 -9.20571 -9.04634 -8.57086 -6.98291 -6.33573 -4.06166 1.13887 1.77459 2.62199 2.81547 2.89960 3.14377 3.28853 3.29849 3.46083 3.50982 3.55457 3.77251 3.87503 4.08573 4.21519 4.28409 4.43091 4.50017 4.58549 4.67745 4.70021 4.84617 4.98170 5.04207 5.05479 5.10460 5.12677 5.19712 5.25485 5.27745 5.33252 5.34965 5.40494 5.54394 5.66739 5.72181 5.75562 5.91471 6.22226 6.40647 7.14149 7.36072 7.89325 7.92620 8.30776 8.36809 9.12344 10.75544 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.001920 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.063688 B =14580.282470 C =15113.309833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.195 4.195 3 C -0.066 4.066 4 O 0.101 5.899 5 N -0.350 5.350 6 C 0.030 3.970 7 C 0.093 3.907 8 N -0.451 5.451 9 C -0.026 4.026 10 C 0.096 3.904 11 O -0.520 6.520 12 C 0.106 3.894 13 N -0.738 5.738 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.125 4.125 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.089 0.911 20 C 0.095 3.905 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.016 3.984 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.215 0.785 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.378 0.622 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.396 0.604 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.271 0.729 42 H 0.102 0.898 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.334 13.213 15.125 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.200 4.200 3 C -0.147 4.147 4 O 0.034 5.966 5 N -0.053 5.053 6 C -0.130 4.130 7 C -0.035 4.035 8 N -0.174 5.174 9 C -0.155 4.155 10 C 0.054 3.946 11 O -0.326 6.326 12 C -0.019 4.019 13 N -0.395 5.395 14 C 0.320 3.680 15 O -0.388 6.388 16 C -0.276 4.276 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.515 5.515 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.113 4.113 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.232 0.768 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.227 0.773 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 22.106 11.466 16.392 29.814 hybrid contribution -2.085 0.908 -0.787 2.406 sum 20.022 12.374 15.605 28.240 Atomic orbital electron populations 1.20131 0.87351 1.03185 1.02914 1.21338 0.98671 0.91700 1.08255 1.25767 0.83199 1.01159 1.04614 1.84834 1.29094 1.15575 1.67085 1.73848 1.22307 0.91174 1.17994 1.23112 0.88588 0.97641 1.03618 1.20959 1.01816 0.88778 0.91990 1.68992 1.22614 1.08306 1.17481 1.24787 0.90940 0.99241 1.00555 1.22413 0.92987 0.94231 0.85009 1.86606 1.36687 1.95358 1.13930 1.21827 0.88367 1.00001 0.91674 1.45875 1.21148 1.41491 1.30944 1.20306 0.80975 0.80583 0.86159 1.90716 1.74928 1.31608 1.41598 1.23284 0.99503 1.05449 0.99330 1.84812 1.17398 1.48909 1.40325 1.22301 1.07039 1.25580 1.12076 0.89334 1.24722 0.95392 0.96442 0.94783 1.69938 1.13648 1.41613 1.26338 0.86734 0.81273 0.82696 0.81135 1.19206 1.19896 1.15942 1.23972 0.99693 0.90906 0.96719 0.90617 0.91197 0.90831 0.76828 0.88844 0.91048 0.89895 0.88891 0.77281 0.90111 0.90251 0.76977 0.88387 0.88282 0.91893 0.87971 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.37 36.01 0.37 -0.02 16 2 C -0.20 -1.43 6.32 -104.42 -0.66 -2.09 16 3 C -0.07 -0.42 12.26 29.74 0.36 -0.05 16 4 O 0.10 0.94 11.20 17.19 0.19 1.13 16 5 N -0.35 -3.90 12.07 33.42 0.40 -3.50 16 6 C 0.03 0.28 6.91 -82.10 -0.57 -0.28 16 7 C 0.09 0.73 5.32 -4.98 -0.03 0.70 16 8 N -0.45 -3.94 6.32 -246.11 -1.55 -5.50 16 9 C -0.03 -0.19 7.14 -7.56 -0.05 -0.24 16 10 C 0.10 0.76 1.72 -90.10 -0.15 0.61 16 11 O -0.52 -4.77 13.55 -35.23 -0.48 -5.25 16 12 C 0.11 0.99 5.42 -4.04 -0.02 0.96 16 13 N -0.74 -7.77 5.34 -60.29 -0.32 -8.09 16 14 C 0.53 8.52 7.85 -10.98 -0.09 8.44 16 15 O -0.51 -10.30 15.86 5.56 0.09 -10.21 16 16 C -0.13 -2.23 6.16 36.01 0.22 -2.01 16 17 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 18 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16 19 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 20 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 21 N -0.88 -26.03 13.97 55.49 0.78 -25.26 16 22 Si 0.86 21.32 27.74 -169.99 -4.72 16.60 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 26 C 0.02 0.12 7.11 -7.56 -0.05 0.07 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.32 7.65 -51.93 -0.40 -0.07 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.22 0.43 8.06 -52.48 -0.42 0.01 16 31 H 0.09 0.70 8.08 -51.92 -0.42 0.29 16 32 H 0.07 0.42 6.81 -51.93 -0.35 0.07 16 33 H 0.08 0.50 7.21 -51.93 -0.37 0.12 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.38 2.36 7.21 45.56 0.33 2.69 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.73 7.90 -51.93 -0.41 0.32 16 38 H 0.40 2.96 6.95 -40.82 -0.28 2.68 16 39 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 40 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.49 7.87 -51.93 -0.41 0.08 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -36.80 378.74 -7.62 -44.42 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.28 Total: 0.97 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.45 Total: -5.60 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.70 Total: -42.34 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.20 Total: -14.33 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.72 Total: 16.60 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.80 -7.62 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278837916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.744 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds