Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35455 * 128.00744 * 2 1 4 4 O 1.34036 * 106.44593 * 179.73877 * 3 2 1 5 5 N 1.20921 * 111.57107 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60286 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.80468 * 179.97438 * 6 5 4 8 8 N 1.46894 * 109.47827 * 270.00519 * 7 6 5 9 9 C 1.47477 * 111.00290 * 265.97124 * 8 7 6 10 10 C 1.53506 * 87.93585 * 221.29367 * 9 8 7 11 11 O 1.42906 * 114.34178 * 272.36469 * 10 9 8 12 12 C 1.52996 * 114.17371 * 139.66671 * 10 9 8 13 13 N 1.46500 * 109.46896 * 86.16070 * 12 10 9 14 14 C 1.34777 * 119.99801 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00052 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00206 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47314 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99897 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00505 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99963 * 180.02562 * 18 17 16 21 21 N 1.31637 * 119.99874 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99977 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46788 * 90.00177 * 22 20 18 24 24 H 1.48493 * 109.46965 * 210.00287 * 22 20 18 25 25 H 1.48499 * 109.47066 * 330.00426 * 22 20 18 26 26 C 1.47477 * 111.00557 * 169.99775 * 8 7 6 27 27 H 1.08994 * 109.47182 * 90.02944 * 1 2 3 28 28 H 1.08997 * 109.46838 * 210.02829 * 1 2 3 29 29 H 1.09000 * 109.47127 * 330.02654 * 1 2 3 30 30 H 1.08003 * 126.77421 * 359.72963 * 3 2 1 31 31 H 1.09007 * 109.46547 * 30.00388 * 7 6 5 32 32 H 1.09001 * 109.47538 * 149.99649 * 7 6 5 33 33 H 1.09001 * 113.47133 * 336.06162 * 9 8 7 34 34 H 1.09006 * 113.47933 * 106.52029 * 9 8 7 35 35 H 0.96697 * 113.99324 * 273.91772 * 11 10 9 36 36 H 1.09003 * 109.47472 * 206.16191 * 12 10 9 37 37 H 1.08999 * 109.47316 * 326.16119 * 12 10 9 38 38 H 0.96995 * 120.00122 * 359.97438 * 13 12 10 39 39 H 1.09003 * 109.47094 * 300.00373 * 16 14 13 40 40 H 1.08999 * 109.46757 * 59.99727 * 16 14 13 41 41 H 0.96999 * 119.99891 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.47436 * 253.46919 * 26 8 7 43 43 H 1.08995 * 113.47312 * 23.93395 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 0.0059 5 7 3.5878 -0.6345 0.0098 6 6 2.3776 -1.1140 0.0066 7 6 1.9827 -2.5683 0.0092 8 7 1.8596 -3.0449 -1.3748 9 6 0.4659 -2.9444 -1.8464 10 6 0.6507 -4.3154 -2.5118 11 8 1.1825 -4.2601 -3.8370 12 6 -0.5603 -5.2417 -2.3849 13 7 -1.5002 -4.9688 -3.4750 14 6 -2.6479 -5.6694 -3.5664 15 8 -2.9024 -6.5260 -2.7465 16 6 -3.6151 -5.3883 -4.6875 17 16 -5.0477 -6.4843 -4.5374 18 6 -5.9850 -5.9553 -5.9325 19 1 -5.6085 -5.1683 -6.5691 20 6 -7.2078 -6.5493 -6.2127 21 7 -7.9083 -6.1537 -7.2546 22 14 -7.8594 -7.9100 -5.1112 23 1 -8.6778 -7.3169 -4.0232 24 1 -8.6983 -8.8366 -5.9128 25 1 -6.7199 -8.6581 -4.5219 26 6 1.7094 -4.5114 -1.4175 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5134 30 1 2.0576 2.1094 -0.0041 31 1 2.7445 -3.1506 0.5276 32 1 1.0267 -2.6843 0.5199 33 1 -0.2669 -2.9486 -1.0395 34 1 0.3056 -2.1344 -2.5580 35 1 0.5135 -4.1366 -4.5243 36 1 -0.2314 -6.2795 -2.4400 37 1 -1.0528 -5.0670 -1.4283 38 1 -1.2968 -4.2834 -4.1305 39 1 -3.9437 -4.3505 -4.6322 40 1 -3.1229 -5.5630 -5.6442 41 1 -8.7626 -6.5690 -7.4507 42 1 2.6030 -5.0294 -1.7656 43 1 1.3085 -4.9337 -0.4961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278837916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -9.248335 kcal Electronic energy + Delta-G solvation = -26491.121081 eV Core-core repulsion = 22473.418555 eV Total energy + Delta-G solvation = -4017.702526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.90036 -41.89647 -40.45138 -37.45783 -35.83974 -35.30362 -34.65405 -33.43451 -31.85545 -30.59619 -28.99825 -28.00610 -27.65963 -27.14494 -24.39567 -22.54902 -21.94617 -21.87126 -21.08331 -20.01488 -18.61983 -18.53979 -18.35111 -17.74507 -17.29030 -17.07683 -16.70112 -16.59878 -16.13705 -16.02266 -15.67118 -15.19888 -15.06001 -14.87167 -14.57973 -14.32465 -14.11464 -14.09036 -13.93287 -13.49558 -13.34107 -13.32467 -13.20440 -12.99545 -12.96336 -12.68997 -12.52613 -11.96293 -11.87345 -11.81865 -11.16914 -11.15783 -11.02455 -10.81330 -10.51839 -10.25674 -10.25085 -9.97818 -8.97778 -8.50214 -6.20693 0.60297 0.99808 1.20296 1.32432 1.47516 1.54419 1.56019 2.13113 2.26022 2.44123 2.70892 2.73058 2.88162 2.95134 3.19516 3.23714 3.51317 3.63263 3.83734 3.96751 3.99089 4.02539 4.22553 4.25581 4.33362 4.44776 4.48585 4.49964 4.60812 4.63729 4.69926 4.76432 4.80796 4.85282 4.90136 4.96476 5.18270 5.26265 5.33697 5.72038 5.83726 6.13335 6.33273 6.62529 6.95154 7.13833 7.35355 8.61950 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.001920 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.063688 B =14580.282470 C =15113.309833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.208 4.208 3 C -0.058 4.058 4 O 0.086 5.914 5 N -0.392 5.392 6 C 0.016 3.984 7 C 0.094 3.906 8 N -0.475 5.475 9 C -0.018 4.018 10 C 0.104 3.896 11 O -0.538 6.538 12 C 0.111 3.889 13 N -0.711 5.711 14 C 0.540 3.460 15 O -0.558 6.558 16 C -0.113 4.113 17 S -0.176 6.176 18 C -0.527 4.527 19 H 0.064 0.936 20 C 0.044 3.956 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.262 1.262 25 H -0.236 1.236 26 C 0.016 3.984 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.255 0.745 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.389 0.611 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.413 0.587 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.276 0.724 42 H 0.091 0.909 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.538 14.010 16.352 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.212 4.212 3 C -0.138 4.138 4 O 0.021 5.979 5 N -0.098 5.098 6 C -0.143 4.143 7 C -0.034 4.034 8 N -0.198 5.198 9 C -0.147 4.147 10 C 0.061 3.939 11 O -0.345 6.345 12 C -0.014 4.014 13 N -0.367 5.367 14 C 0.326 3.674 15 O -0.436 6.436 16 C -0.264 4.264 17 S 0.050 5.950 18 C -0.675 4.675 19 H 0.082 0.918 20 C -0.162 4.162 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.186 1.186 25 H -0.160 1.160 26 C -0.113 4.113 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.271 0.729 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.240 0.760 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.251 0.749 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 22.348 12.314 17.597 30.996 hybrid contribution -1.994 0.812 -1.191 2.460 sum 20.355 13.126 16.406 29.253 Atomic orbital electron populations 1.20197 0.85637 1.04230 1.03277 1.21690 0.99839 0.91180 1.08487 1.26572 0.81926 1.02790 1.02541 1.84777 1.30615 1.15140 1.67376 1.73839 1.23722 0.92093 1.20126 1.23547 0.88708 0.98876 1.03168 1.21018 1.02680 0.88010 0.91731 1.68963 1.23625 1.08949 1.18243 1.24782 0.90734 0.98390 1.00803 1.22325 0.92367 0.94438 0.84769 1.86598 1.37782 1.95415 1.14750 1.21908 0.88295 0.99923 0.91259 1.45564 1.19384 1.40411 1.31360 1.19892 0.81862 0.80576 0.85055 1.90710 1.76135 1.33754 1.42994 1.23281 0.97231 1.04643 1.01206 1.84731 1.20341 1.51408 1.38498 1.22465 1.07557 1.24665 1.12818 0.91821 1.25579 0.95843 0.98668 0.96069 1.70020 1.14382 1.43156 1.27945 0.85866 0.80692 0.80226 0.79584 1.18655 1.18624 1.16003 1.24052 0.99236 0.90493 0.97498 0.90472 0.90822 0.89196 0.72911 0.89268 0.88982 0.88173 0.89107 0.76029 0.91015 0.89417 0.74879 0.86476 0.86674 0.91433 0.89040 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.37 71.24 0.74 0.19 16 2 C -0.21 -2.66 6.32 -19.73 -0.12 -2.78 16 3 C -0.06 -0.62 12.26 67.18 0.82 0.20 16 4 O 0.09 1.56 11.20 71.67 0.80 2.36 16 5 N -0.39 -8.74 12.07 -49.56 -0.60 -9.33 16 6 C 0.02 0.29 6.91 43.58 0.30 0.59 16 7 C 0.09 1.34 5.32 85.56 0.46 1.79 16 8 N -0.47 -7.55 6.32 -932.93 -5.89 -13.44 16 9 C -0.02 -0.22 7.14 83.57 0.60 0.38 16 10 C 0.10 1.41 1.72 -10.45 -0.02 1.39 16 11 O -0.54 -8.84 13.55 -148.98 -2.02 -10.85 16 12 C 0.11 1.77 5.42 86.38 0.47 2.24 16 13 N -0.71 -13.00 5.34 -463.06 -2.47 -15.47 16 14 C 0.54 16.10 7.85 87.66 0.69 16.79 16 15 O -0.56 -21.53 15.86 -3.03 -0.05 -21.58 16 16 C -0.11 -3.81 6.16 71.24 0.44 -3.37 16 17 S -0.18 -8.46 18.55 -56.49 -1.05 -9.51 16 18 C -0.53 -29.67 10.04 67.95 0.68 -28.99 16 19 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 20 C 0.04 2.51 5.50 84.86 0.47 2.98 16 21 N -0.92 -54.80 13.97 21.65 0.30 -54.49 16 22 Si 0.91 43.92 27.74 68.60 1.90 45.82 16 23 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.24 -11.29 6.74 99.48 0.67 -10.62 16 26 C 0.02 0.21 7.11 83.57 0.59 0.81 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.47 7.65 -2.39 -0.02 0.46 16 29 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.26 0.23 8.06 -2.91 -0.02 0.20 16 31 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 32 H 0.09 0.86 6.81 -2.39 -0.02 0.84 16 33 H 0.10 0.86 7.21 -2.39 -0.02 0.84 16 34 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.39 3.93 7.21 -74.06 -0.53 3.40 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.35 7.90 -2.39 -0.02 1.33 16 38 H 0.41 4.84 6.95 -92.71 -0.64 4.19 16 39 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 40 H 0.12 3.55 8.14 -2.40 -0.02 3.53 16 41 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.11 0.95 7.87 -2.39 -0.02 0.93 16 Total: -1.00 -80.99 378.74 -3.12 -84.11 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -0.16 Total: 10.19 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 6.11 Total: -7.80 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -8.66 Total: -92.74 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.26 Total: -30.07 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.90 Total: 45.82 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.05 Total: -9.51 kcal Total: -80.99 -3.12 -84.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278837916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.862 kcal (2) G-P(sol) polarization free energy of solvation -80.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds