Wall clock time and date at job start Sat Apr 11 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33692 * 126.26771 * 2 1 4 4 C 1.30625 * 108.99356 * 179.97438 * 3 2 1 5 5 O 1.33670 * 109.14957 * 359.97438 * 4 3 2 6 6 C 1.35341 * 107.68680 * 359.75815 * 5 4 3 7 7 C 1.46722 * 126.64331 * 180.26416 * 6 5 4 8 8 O 1.21683 * 119.99978 * 180.14468 * 7 6 5 9 9 N 1.34769 * 119.99961 * 0.14526 * 7 6 5 10 10 C 1.46500 * 120.00051 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47262 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47653 * 64.99660 * 11 10 9 13 13 C 1.53002 * 109.47225 * 184.99718 * 11 10 9 14 14 N 1.46497 * 109.47308 * 304.99542 * 11 10 9 15 15 C 1.46497 * 120.00281 * 300.00468 * 14 11 10 16 16 C 1.34783 * 120.00143 * 119.99724 * 14 11 10 17 17 O 1.21287 * 119.99740 * 0.02562 * 16 14 11 18 18 C 1.50695 * 120.00206 * 180.02562 * 16 14 11 19 19 S 1.80994 * 109.47225 * 180.02562 * 18 16 14 20 20 C 1.76201 * 100.00288 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99681 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00419 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00197 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47035 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47211 * 120.00176 * 24 22 20 27 27 H 1.48497 * 109.46938 * 239.99870 * 24 22 20 28 28 H 1.08999 * 109.46995 * 90.02764 * 1 2 3 29 29 H 1.08994 * 109.46790 * 210.02451 * 1 2 3 30 30 H 1.08997 * 109.47305 * 330.02892 * 1 2 3 31 31 H 1.07996 * 125.42335 * 180.02562 * 4 3 2 32 32 H 0.96998 * 120.00597 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.47328 * 299.99774 * 10 9 7 34 34 H 1.09001 * 109.47487 * 59.99796 * 10 9 7 35 35 H 1.09002 * 109.47160 * 180.02562 * 13 11 10 36 36 H 1.09005 * 109.47324 * 299.99768 * 13 11 10 37 37 H 1.09001 * 109.47286 * 60.00052 * 13 11 10 38 38 H 1.08992 * 109.47287 * 89.99424 * 15 14 11 39 39 H 1.09000 * 109.47371 * 210.00017 * 15 14 11 40 40 H 1.08998 * 109.47049 * 329.99402 * 15 14 11 41 41 H 1.09002 * 109.47214 * 299.99868 * 18 16 14 42 42 H 1.08997 * 109.47529 * 59.99562 * 18 16 14 43 43 H 0.97008 * 120.00128 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5453 0.6900 0.0006 5 8 3.5890 -0.6460 0.0015 6 6 2.3137 -1.0991 0.0070 7 6 1.8828 -2.5016 0.0153 8 8 0.6968 -2.7737 0.0169 9 7 2.8005 -3.4885 0.0211 10 6 2.3703 -4.8889 0.0288 11 6 3.5993 -5.8000 0.0337 12 1 4.1501 -5.6624 0.9642 13 6 3.1532 -7.2588 -0.0839 14 7 4.4632 -5.4608 -1.0998 15 6 3.9509 -5.5649 -2.4683 16 6 5.7295 -5.0527 -0.8836 17 8 6.1538 -4.9668 0.2494 18 6 6.6180 -4.7032 -2.0494 19 16 8.2442 -4.1959 -1.4379 20 6 9.0534 -3.8559 -2.9657 21 1 8.5236 -3.9857 -3.8979 22 6 10.3712 -3.4203 -2.9713 23 7 11.0164 -3.2607 -1.8351 24 14 11.2287 -3.0592 -4.5911 25 1 10.2923 -3.3152 -5.7148 26 1 11.6580 -1.6378 -4.6178 27 1 12.4178 -3.9380 -4.7283 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.4043 1.3445 0.0011 32 1 3.7460 -3.2717 0.0194 33 1 1.7721 -5.0803 0.9197 34 1 1.7726 -5.0903 -0.8602 35 1 4.0288 -7.9080 -0.0800 36 1 2.5104 -7.5114 0.7594 37 1 2.6025 -7.3965 -1.0145 38 1 3.5018 -4.6160 -2.7613 39 1 4.7705 -5.8036 -3.1460 40 1 3.1991 -6.3527 -2.5158 41 1 6.7287 -5.5739 -2.6958 42 1 6.1708 -3.8856 -2.6148 43 1 11.9375 -2.9566 -1.8390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280450849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:22 Heat of formation + Delta-G solvation = -46.324081 kcal Electronic energy + Delta-G solvation = -27450.200383 eV Core-core repulsion = 23430.890133 eV Total energy + Delta-G solvation = -4019.310251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.63449 -40.27225 -39.34363 -36.67252 -35.59059 -34.34727 -32.48561 -32.32009 -31.73481 -28.86016 -28.42595 -26.98844 -26.40439 -25.54402 -23.84063 -22.09997 -21.64096 -20.78670 -19.33137 -18.36134 -17.80834 -17.14970 -16.99065 -16.71278 -16.53944 -15.65336 -15.59060 -15.08883 -14.85607 -14.73659 -14.42878 -14.19930 -13.53890 -13.48293 -13.33950 -13.22618 -13.22234 -13.03582 -12.63582 -12.45999 -12.41598 -12.34644 -12.09341 -11.90488 -11.32260 -11.18743 -11.12050 -11.11776 -11.07165 -10.80186 -10.40164 -9.85689 -9.57717 -9.44716 -9.12891 -9.07187 -8.72295 -8.29795 -6.56908 -6.27580 -3.98546 0.60152 2.20386 2.25997 2.74571 2.84261 2.88423 2.97528 3.17263 3.21588 3.26786 3.51561 3.83799 4.14496 4.37085 4.48618 4.51365 4.75845 4.94897 4.97033 5.00882 5.07945 5.19241 5.24614 5.26849 5.35884 5.36095 5.42327 5.44164 5.49831 5.60661 5.64391 5.71610 5.79163 5.82241 5.90682 6.02523 6.05252 6.10597 6.50573 7.05933 7.35620 7.37484 7.54391 7.76712 8.29596 8.39274 9.18193 10.79774 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010082 B = 0.003295 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.600569 B = 8496.143767 C =10526.846137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.080 3.920 3 N -0.498 5.498 4 C 0.213 3.787 5 O -0.184 6.184 6 C -0.122 4.122 7 C 0.611 3.389 8 O -0.520 6.520 9 N -0.711 5.711 10 C 0.112 3.888 11 C 0.122 3.878 12 H 0.111 0.889 13 C -0.157 4.157 14 N -0.621 5.621 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.151 4.151 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.259 0.741 32 H 0.411 0.589 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.142 -0.445 1.834 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 N -0.227 5.227 4 C -0.012 4.012 5 O -0.070 6.070 6 C -0.177 4.177 7 C 0.397 3.603 8 O -0.399 6.399 9 N -0.362 5.362 10 C -0.013 4.013 11 C 0.018 3.982 12 H 0.129 0.871 13 C -0.216 4.216 14 N -0.357 5.357 15 C -0.066 4.066 16 C 0.320 3.680 17 O -0.388 6.388 18 C -0.301 4.301 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.274 0.726 32 H 0.247 0.753 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.303 0.087 3.600 20.620 hybrid contribution 1.030 -0.265 -2.520 2.735 sum -19.273 -0.179 1.080 19.304 Atomic orbital electron populations 1.20385 0.85359 1.04310 1.03683 1.22073 0.98353 0.86399 0.97559 1.70386 1.01346 1.31296 1.19718 1.28465 0.97589 0.79399 0.95779 1.84576 1.29277 1.24528 1.68575 1.22838 0.81769 0.96184 1.16949 1.16268 0.85608 0.81447 0.76959 1.90841 1.15643 1.82089 1.51283 1.45845 1.10489 1.06050 1.73817 1.21853 0.96799 0.79409 1.03218 1.21300 0.90525 0.94175 0.92195 0.87145 1.22053 1.02306 0.94598 1.02610 1.47970 1.12432 1.68604 1.06736 1.21766 1.00491 1.01631 0.82681 1.20447 0.80975 0.75664 0.90874 1.90710 1.72910 1.51351 1.23874 1.23563 1.02921 1.04341 0.99299 1.85385 1.00130 1.86066 1.11754 1.22888 1.00222 1.52360 0.92858 0.90920 1.24986 0.96299 0.94767 0.97470 1.70024 1.11369 1.43470 1.25348 0.86127 0.79247 0.78158 0.82035 1.19616 1.20531 1.20546 0.90029 0.88707 0.90470 0.72559 0.75283 0.89918 0.90653 0.91268 0.91057 0.91914 0.92843 0.90450 0.91044 0.89162 0.89296 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.88 36.01 0.36 -0.45 16 2 C 0.08 1.00 7.16 -82.46 -0.59 0.41 16 3 N -0.50 -6.09 11.26 -10.88 -0.12 -6.22 16 4 C 0.21 2.20 13.21 52.25 0.69 2.89 16 5 O -0.18 -2.33 10.57 4.42 0.05 -2.28 16 6 C -0.12 -1.59 7.18 -36.84 -0.26 -1.85 16 7 C 0.61 7.92 7.79 -12.84 -0.10 7.82 16 8 O -0.52 -7.30 14.79 5.20 0.08 -7.22 16 9 N -0.71 -8.43 5.38 -61.61 -0.33 -8.76 16 10 C 0.11 1.08 4.97 -4.04 -0.02 1.06 16 11 C 0.12 1.27 2.80 -67.93 -0.19 1.07 16 12 H 0.11 1.37 6.90 -51.93 -0.36 1.02 16 13 C -0.16 -1.23 9.17 37.16 0.34 -0.89 16 14 N -0.62 -7.61 2.24 -173.94 -0.39 -8.00 16 15 C 0.08 0.74 9.40 59.85 0.56 1.30 16 16 C 0.53 9.13 7.40 -10.98 -0.08 9.05 16 17 O -0.51 -10.64 15.19 5.55 0.08 -10.56 16 18 C -0.15 -2.87 4.71 36.00 0.17 -2.70 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 20 C -0.54 -14.77 9.50 30.94 0.29 -14.47 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.48 13.22 55.49 0.73 -24.75 16 24 Si 0.92 20.91 29.55 -169.99 -5.02 15.88 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.99 6.45 -51.93 -0.33 0.65 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.26 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.41 5.41 7.66 -40.82 -0.31 5.10 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.68 7.84 -51.93 -0.41 0.28 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.41 6.66 -51.93 -0.35 0.07 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.76 6.44 -51.93 -0.33 0.42 16 40 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 41 H 0.09 1.61 7.40 -51.91 -0.38 1.22 16 42 H 0.09 1.59 8.11 -51.92 -0.42 1.17 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -35.27 379.67 -6.08 -41.36 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.74 Total: 3.40 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 1.07 Total: 5.19 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.11 Total: -47.72 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.21 Total: -20.06 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.27 -6.08 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280450849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.967 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds