Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34656 * 125.80043 * 2 1 4 4 H 0.96998 * 124.85689 * 0.02562 * 3 2 1 5 5 C 1.36446 * 110.29658 * 180.29120 * 3 2 1 6 6 C 1.34485 * 108.85896 * 359.74676 * 5 3 2 7 7 C 1.36773 * 125.80056 * 179.85899 * 2 1 3 8 8 C 1.47262 * 126.94020 * 359.97438 * 7 2 1 9 9 O 1.21622 * 120.00035 * 359.70853 * 8 7 2 10 10 N 1.34776 * 119.99546 * 179.70630 * 8 7 2 11 11 C 1.46500 * 119.99923 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47226 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47434 * 64.99688 * 12 11 10 14 14 C 1.52997 * 109.47114 * 184.99495 * 12 11 10 15 15 O 1.42903 * 109.47059 * 55.00009 * 14 12 11 16 16 N 1.46498 * 109.46963 * 304.99288 * 12 11 10 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 12 11 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 12 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 12 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 H 1.08993 * 109.47188 * 270.13670 * 1 2 3 30 30 H 1.09003 * 109.47134 * 30.13621 * 1 2 3 31 31 H 1.09001 * 109.46631 * 150.13588 * 1 2 3 32 32 H 1.08001 * 125.57188 * 179.76522 * 5 3 2 33 33 H 1.07998 * 126.83809 * 180.02562 * 6 5 3 34 34 H 0.96998 * 119.99957 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.47176 * 59.99567 * 11 10 8 36 36 H 1.09008 * 109.46559 * 299.99697 * 11 10 8 37 37 H 1.08997 * 109.47241 * 175.00015 * 14 12 11 38 38 H 1.09002 * 109.47280 * 295.00109 * 14 12 11 39 39 H 0.96700 * 113.99965 * 180.02562 * 15 14 12 40 40 H 0.97001 * 120.00384 * 335.00737 * 16 12 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 42 42 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 43 43 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9735 2.0074 0.0004 5 6 3.6095 0.7274 -0.0065 6 6 3.6883 -0.6151 -0.0052 7 6 2.3071 -1.1093 0.0027 8 6 1.8702 -2.5156 0.0067 9 8 0.6839 -2.7838 0.0132 10 7 2.7850 -3.5054 0.0031 11 6 2.3504 -4.9044 0.0065 12 6 3.5766 -5.8194 0.0019 13 1 4.1319 -5.6876 0.9307 14 6 3.1255 -7.2762 -0.1201 15 8 2.3000 -7.4239 -1.2773 16 7 4.4366 -5.4777 -1.1338 17 6 5.7558 -5.7495 -1.0859 18 8 6.2301 -6.2816 -0.1047 19 6 6.6416 -5.3924 -2.2517 20 16 8.3457 -5.8810 -1.8866 21 6 9.1377 -5.3625 -3.3727 22 1 8.5605 -4.8983 -4.1587 23 6 10.5037 -5.5496 -3.5328 24 7 11.2074 -6.1149 -2.5746 25 14 11.3433 -5.0006 -5.1086 26 1 11.1586 -3.5375 -5.2839 27 1 12.7933 -5.3112 -5.0310 28 1 10.7452 -5.7170 -6.2637 29 1 -0.3633 0.0025 1.0276 30 1 -0.3633 0.8888 -0.5160 31 1 -0.3632 -0.8912 -0.5117 32 1 4.4497 1.4060 -0.0116 33 1 4.5890 -1.2109 -0.0088 34 1 3.7310 -3.2914 -0.0025 35 1 1.7475 -5.0998 -0.8803 36 1 1.7563 -5.0981 0.8997 37 1 3.9996 -7.9208 -0.2128 38 1 2.5595 -7.5570 0.7681 39 1 1.9766 -8.3244 -1.4174 40 1 4.0573 -5.0521 -1.9186 41 1 6.2970 -5.9159 -3.1435 42 1 6.6004 -4.3168 -2.4232 43 1 12.1618 -6.2460 -2.6867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281067718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = -84.918604 kcal Electronic energy + Delta-G solvation = -26674.367241 eV Core-core repulsion = 22653.383406 eV Total energy + Delta-G solvation = -4020.983835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46080 -39.82666 -38.87090 -37.19753 -35.36488 -33.54092 -32.43042 -31.78635 -31.50963 -30.55192 -28.36556 -26.89219 -25.71147 -25.47880 -22.56765 -21.63029 -20.83786 -20.29534 -19.60554 -17.96652 -17.89469 -17.57868 -16.73835 -16.30186 -16.03544 -15.49059 -15.25223 -15.07082 -14.80538 -14.59626 -14.35436 -14.01897 -13.90674 -13.64392 -13.46099 -13.29144 -13.12399 -12.95310 -12.81954 -12.79720 -12.39580 -12.29360 -11.81666 -11.71995 -11.40691 -11.04708 -11.04026 -10.77202 -10.18766 -9.91610 -9.82687 -9.43183 -9.21841 -9.06846 -8.98823 -8.94885 -8.40527 -8.24773 -6.50323 -6.21980 -3.92413 1.56570 2.21616 2.80539 2.99385 3.03809 3.23399 3.26232 3.28824 3.35218 3.47691 3.70677 4.14876 4.20477 4.52942 4.56379 4.74294 4.92468 4.95861 5.03721 5.12281 5.13261 5.20351 5.28178 5.29607 5.36839 5.52130 5.59608 5.64100 5.67493 5.73220 5.89315 5.92579 5.99770 6.15660 6.36657 6.52034 6.59203 6.68370 7.16337 7.47212 7.53292 7.59378 7.69808 8.27318 8.35001 8.57243 9.23477 10.85372 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.002742 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.512781 B =10210.623794 C =12391.690997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.105 3.895 3 N -0.554 5.554 4 H 0.415 0.585 5 C -0.016 4.016 6 C -0.165 4.165 7 C -0.238 4.238 8 C 0.593 3.407 9 O -0.554 6.554 10 N -0.726 5.726 11 C 0.119 3.881 12 C 0.139 3.861 13 H 0.106 0.894 14 C 0.066 3.934 15 O -0.568 6.568 16 N -0.728 5.728 17 C 0.534 3.466 18 O -0.519 6.519 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.171 0.829 33 H 0.147 0.853 34 H 0.404 0.596 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.379 0.621 40 H 0.402 0.598 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.614 10.760 5.592 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.014 4.014 3 N -0.149 5.149 4 H 0.252 0.748 5 C -0.143 4.143 6 C -0.189 4.189 7 C -0.248 4.248 8 C 0.383 3.617 9 O -0.434 6.434 10 N -0.377 5.377 11 C -0.005 4.005 12 C 0.033 3.967 13 H 0.124 0.876 14 C -0.014 4.014 15 O -0.374 6.374 16 N -0.382 5.382 17 C 0.320 3.680 18 O -0.394 6.394 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.188 0.812 33 H 0.165 0.835 34 H 0.239 0.761 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.226 0.774 40 H 0.237 0.763 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.352 10.360 7.259 24.818 hybrid contribution 0.311 1.063 -2.441 2.680 sum -21.041 11.423 4.818 24.421 Atomic orbital electron populations 1.20572 0.87030 1.04189 1.03404 1.20339 0.93686 0.85682 1.01653 1.41613 1.06333 1.08378 1.58619 0.74831 1.21770 0.85596 0.96580 1.10389 1.22119 0.95859 0.93823 1.07132 1.20104 0.93318 0.91964 1.19428 1.17310 0.85131 0.84073 0.75220 1.90723 1.16636 1.84522 1.51542 1.45758 1.10233 1.05679 1.76078 1.21528 0.95755 0.79436 1.03798 1.21244 0.90764 0.92726 0.91940 0.87619 1.22556 0.94264 0.96556 0.87992 1.86452 1.69571 1.34515 1.46852 1.46019 1.07708 1.64560 1.19963 1.20354 0.81536 0.77524 0.88577 1.90701 1.74044 1.41161 1.33460 1.23533 1.03203 1.04797 0.98883 1.85356 0.92737 1.79833 1.25333 1.22831 0.95841 1.46457 1.03250 0.90979 1.24986 0.96284 0.94799 0.97477 1.70004 1.07733 1.40407 1.32207 0.86233 0.78143 0.79129 0.82054 1.19932 1.20834 1.19946 0.90500 0.91920 0.88001 0.81198 0.83524 0.76133 0.89690 0.90373 0.92080 0.92687 0.77380 0.76303 0.89186 0.89190 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 9.88 36.01 0.36 -0.40 16 2 C 0.10 1.01 7.17 -81.88 -0.59 0.42 16 3 N -0.55 -3.93 5.90 -9.10 -0.05 -3.99 16 4 H 0.42 1.54 8.96 -40.82 -0.37 1.18 16 5 C -0.02 -0.13 11.89 -16.83 -0.20 -0.33 16 6 C -0.17 -1.66 10.56 -37.50 -0.40 -2.06 16 7 C -0.24 -2.74 6.29 -103.35 -0.65 -3.39 16 8 C 0.59 7.66 7.81 -12.59 -0.10 7.56 16 9 O -0.55 -8.41 14.82 5.26 0.08 -8.33 16 10 N -0.73 -8.12 5.38 -61.44 -0.33 -8.45 16 11 C 0.12 1.28 5.12 -4.04 -0.02 1.26 16 12 C 0.14 1.59 2.53 -67.93 -0.17 1.41 16 13 H 0.11 1.29 7.57 -51.93 -0.39 0.90 16 14 C 0.07 0.69 6.85 37.16 0.25 0.95 16 15 O -0.57 -5.74 12.64 -35.23 -0.45 -6.18 16 16 N -0.73 -9.45 4.46 -53.81 -0.24 -9.69 16 17 C 0.53 9.41 7.82 -10.98 -0.09 9.33 16 18 O -0.52 -11.00 15.52 5.55 0.09 -10.91 16 19 C -0.15 -3.02 6.16 36.01 0.22 -2.79 16 20 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 21 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 25 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 1.03 6.47 -51.93 -0.34 0.69 16 32 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.15 1.35 7.70 -52.49 -0.40 0.95 16 34 H 0.40 4.28 7.26 -40.82 -0.30 3.98 16 35 H 0.08 1.02 7.39 -51.93 -0.38 0.63 16 36 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.38 2.32 9.12 45.56 0.42 2.73 16 40 H 0.40 4.69 8.60 -40.82 -0.35 4.34 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -37.34 384.70 -7.83 -45.17 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.04 Total: 10.18 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.18 Total: -0.84 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.11 Total: -47.34 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.28 Total: -25.43 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.34 -7.83 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281067718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.745 kcal (2) G-P(sol) polarization free energy of solvation -37.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds