Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34656 * 125.80043 * 2 1 4 4 H 0.96998 * 124.85689 * 0.02562 * 3 2 1 5 5 C 1.36446 * 110.29658 * 180.29120 * 3 2 1 6 6 C 1.34485 * 108.85896 * 359.74676 * 5 3 2 7 7 C 1.36773 * 125.80056 * 179.85899 * 2 1 3 8 8 C 1.47262 * 126.94020 * 359.97438 * 7 2 1 9 9 O 1.21622 * 120.00035 * 359.70853 * 8 7 2 10 10 N 1.34776 * 119.99546 * 179.70630 * 8 7 2 11 11 C 1.46500 * 119.99923 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47226 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47434 * 64.99688 * 12 11 10 14 14 C 1.52997 * 109.47114 * 184.99495 * 12 11 10 15 15 O 1.42903 * 109.47059 * 55.00009 * 14 12 11 16 16 N 1.46498 * 109.46963 * 304.99288 * 12 11 10 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 12 11 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 12 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 12 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 H 1.08993 * 109.47188 * 270.13670 * 1 2 3 30 30 H 1.09003 * 109.47134 * 30.13621 * 1 2 3 31 31 H 1.09001 * 109.46631 * 150.13588 * 1 2 3 32 32 H 1.08001 * 125.57188 * 179.76522 * 5 3 2 33 33 H 1.07998 * 126.83809 * 180.02562 * 6 5 3 34 34 H 0.96998 * 119.99957 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.47176 * 59.99567 * 11 10 8 36 36 H 1.09008 * 109.46559 * 299.99697 * 11 10 8 37 37 H 1.08997 * 109.47241 * 175.00015 * 14 12 11 38 38 H 1.09002 * 109.47280 * 295.00109 * 14 12 11 39 39 H 0.96700 * 113.99965 * 180.02562 * 15 14 12 40 40 H 0.97001 * 120.00384 * 335.00737 * 16 12 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 42 42 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 43 43 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9735 2.0074 0.0004 5 6 3.6095 0.7274 -0.0065 6 6 3.6883 -0.6151 -0.0052 7 6 2.3071 -1.1093 0.0027 8 6 1.8702 -2.5156 0.0067 9 8 0.6839 -2.7838 0.0132 10 7 2.7850 -3.5054 0.0031 11 6 2.3504 -4.9044 0.0065 12 6 3.5766 -5.8194 0.0019 13 1 4.1319 -5.6876 0.9307 14 6 3.1255 -7.2762 -0.1201 15 8 2.3000 -7.4239 -1.2773 16 7 4.4366 -5.4777 -1.1338 17 6 5.7558 -5.7495 -1.0859 18 8 6.2301 -6.2816 -0.1047 19 6 6.6416 -5.3924 -2.2517 20 16 8.3457 -5.8810 -1.8866 21 6 9.1377 -5.3625 -3.3727 22 1 8.5605 -4.8983 -4.1587 23 6 10.5037 -5.5496 -3.5328 24 7 11.2074 -6.1149 -2.5746 25 14 11.3433 -5.0006 -5.1086 26 1 11.1586 -3.5375 -5.2839 27 1 12.7933 -5.3112 -5.0310 28 1 10.7452 -5.7170 -6.2637 29 1 -0.3633 0.0025 1.0276 30 1 -0.3633 0.8888 -0.5160 31 1 -0.3632 -0.8912 -0.5117 32 1 4.4497 1.4060 -0.0116 33 1 4.5890 -1.2109 -0.0088 34 1 3.7310 -3.2914 -0.0025 35 1 1.7475 -5.0998 -0.8803 36 1 1.7563 -5.0981 0.8997 37 1 3.9996 -7.9208 -0.2128 38 1 2.5595 -7.5570 0.7681 39 1 1.9766 -8.3244 -1.4174 40 1 4.0573 -5.0521 -1.9186 41 1 6.2970 -5.9159 -3.1435 42 1 6.6004 -4.3168 -2.4232 43 1 12.1618 -6.2460 -2.6867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281067718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -116.029117 kcal Electronic energy + Delta-G solvation = -26675.716294 eV Core-core repulsion = 22653.383406 eV Total energy + Delta-G solvation = -4022.332888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.15550 -41.01700 -39.95353 -38.21678 -36.33922 -34.67913 -34.55670 -32.49426 -32.39453 -31.60587 -29.71609 -27.67962 -27.59420 -26.50434 -23.43495 -22.70358 -21.58627 -21.48237 -20.51026 -19.81603 -18.58857 -18.56508 -17.82771 -17.62873 -16.95655 -16.86065 -16.47165 -16.40709 -16.27650 -15.81125 -15.35848 -15.22119 -14.86079 -14.61103 -14.54607 -14.40173 -14.27036 -13.99141 -13.67198 -13.61646 -13.52990 -13.39889 -13.15099 -12.94359 -12.84650 -12.60123 -12.49301 -12.32034 -11.72932 -11.12316 -11.11405 -10.91121 -10.81133 -10.25933 -10.17668 -10.13761 -9.73159 -9.10622 -8.63429 -8.33019 -6.10073 0.75788 1.27842 1.44582 1.47319 1.53684 1.57109 1.60927 2.08399 2.25318 2.30302 2.55288 2.58366 3.01041 3.33203 3.34536 3.60723 3.92660 3.96856 4.01307 4.09503 4.30966 4.31218 4.32570 4.34188 4.48536 4.54278 4.63433 4.67602 4.72808 4.74370 4.94441 4.97321 5.08835 5.28636 5.39364 5.43624 5.49775 5.79807 5.98372 6.21399 6.46299 6.57141 6.69286 6.88021 7.08575 7.21599 7.32845 8.75751 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.002742 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.512781 B =10210.623794 C =12391.690997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.101 3.899 3 N -0.538 5.538 4 H 0.433 0.567 5 C -0.005 4.005 6 C -0.191 4.191 7 C -0.272 4.272 8 C 0.588 3.412 9 O -0.584 6.584 10 N -0.721 5.721 11 C 0.131 3.869 12 C 0.141 3.859 13 H 0.100 0.900 14 C 0.071 3.929 15 O -0.579 6.579 16 N -0.704 5.704 17 C 0.541 3.459 18 O -0.558 6.558 19 C -0.131 4.131 20 S -0.142 6.142 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 0.995 3.005 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.264 1.264 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.201 0.799 33 H 0.147 0.853 34 H 0.406 0.594 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.397 0.603 40 H 0.412 0.588 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.715 12.709 4.436 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.019 4.019 3 N -0.135 5.135 4 H 0.273 0.727 5 C -0.132 4.132 6 C -0.215 4.215 7 C -0.283 4.283 8 C 0.379 3.621 9 O -0.467 6.467 10 N -0.372 5.372 11 C 0.006 3.994 12 C 0.036 3.964 13 H 0.118 0.882 14 C -0.008 4.008 15 O -0.388 6.388 16 N -0.358 5.358 17 C 0.327 3.673 18 O -0.436 6.436 19 C -0.283 4.283 20 S 0.085 5.915 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.189 1.189 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.218 0.782 33 H 0.165 0.835 34 H 0.242 0.758 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.247 0.753 40 H 0.249 0.751 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.498 12.329 6.088 26.367 hybrid contribution 0.514 0.491 -2.046 2.166 sum -21.984 12.820 4.042 25.768 Atomic orbital electron populations 1.20545 0.86115 1.04394 1.03782 1.20567 0.94460 0.85973 1.00861 1.41614 1.05879 1.08838 1.57187 0.72681 1.22236 0.86524 0.96336 1.08140 1.22259 0.95352 0.95012 1.08850 1.20222 0.94610 0.91731 1.21686 1.17622 0.84847 0.84969 0.74704 1.90698 1.17721 1.85064 1.53187 1.45734 1.10214 1.05652 1.75606 1.21417 0.95104 0.79052 1.03784 1.21361 0.90421 0.93858 0.90792 0.88201 1.22433 0.94023 0.94985 0.89384 1.86406 1.69349 1.36345 1.46659 1.45764 1.06192 1.63076 1.20758 1.19970 0.82620 0.77362 0.87383 1.90696 1.74993 1.43259 1.34645 1.23376 0.98703 1.06000 1.00183 1.85486 0.98627 1.80845 1.26529 1.23175 0.96508 1.46406 1.03446 0.90112 1.26084 0.97043 0.94615 1.01262 1.70166 1.08088 1.41796 1.34642 0.85046 0.76820 0.79169 0.77234 1.18600 1.20404 1.18882 0.89997 0.89101 0.90335 0.78181 0.83533 0.75797 0.90369 0.89652 0.94232 0.89974 0.75270 0.75126 0.87837 0.87181 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.88 71.24 0.70 -0.64 16 2 C 0.10 1.82 7.17 41.78 0.30 2.12 16 3 N -0.54 -6.34 5.90 -182.72 -1.08 -7.41 16 4 H 0.43 1.88 8.96 -92.71 -0.83 1.04 16 5 C 0.00 -0.06 11.89 83.12 0.99 0.92 16 6 C -0.19 -3.65 10.56 23.62 0.25 -3.40 16 7 C -0.27 -6.15 6.29 -19.04 -0.12 -6.27 16 8 C 0.59 15.20 7.81 86.62 0.68 15.87 16 9 O -0.58 -17.91 14.82 -4.10 -0.06 -17.97 16 10 N -0.72 -15.90 5.38 -466.53 -2.51 -18.41 16 11 C 0.13 2.71 5.12 86.38 0.44 3.15 16 12 C 0.14 3.10 2.53 44.99 0.11 3.21 16 13 H 0.10 2.40 7.57 -2.39 -0.02 2.38 16 14 C 0.07 1.41 6.85 71.98 0.49 1.91 16 15 O -0.58 -10.76 12.64 -148.98 -1.88 -12.64 16 16 N -0.70 -17.66 4.46 -442.53 -1.97 -19.63 16 17 C 0.54 18.94 7.82 87.66 0.69 19.63 16 18 O -0.56 -24.06 15.52 -3.04 -0.05 -24.11 16 19 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 20 S -0.14 -7.71 20.57 -56.49 -1.16 -8.87 16 21 C -0.55 -30.93 9.50 67.96 0.65 -30.29 16 22 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 23 C 0.01 0.84 5.49 84.86 0.47 1.30 16 24 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 25 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.58 6.47 -2.39 -0.02 1.56 16 32 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.15 2.65 7.70 -2.91 -0.02 2.63 16 34 H 0.41 8.49 7.26 -92.71 -0.67 7.82 16 35 H 0.08 1.79 7.39 -2.39 -0.02 1.77 16 36 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.40 4.16 9.12 -74.06 -0.68 3.48 16 40 H 0.41 8.99 8.60 -92.71 -0.80 8.19 16 41 H 0.10 3.74 8.14 -2.40 -0.02 3.72 16 42 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 43 H 0.27 15.34 8.31 -92.72 -0.77 14.57 16 Total: -1.00 -82.95 384.70 -2.21 -85.15 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -1.88 Total: 30.87 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 6.08 Total: 2.85 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -5.28 Total: -100.54 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -1.99 Total: -54.73 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -7.71 SS G_CDS: -1.16 Total: -8.87 kcal Total: -82.95 -2.21 -85.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281067718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.877 kcal (2) G-P(sol) polarization free energy of solvation -82.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds