Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34658 * 125.80476 * 2 1 4 4 H 0.97004 * 124.84819 * 0.03174 * 3 2 1 5 5 C 1.36446 * 110.30016 * 180.29740 * 3 2 1 6 6 C 1.34484 * 108.85303 * 359.75489 * 5 3 2 7 7 C 1.36775 * 125.79948 * 179.87483 * 2 1 3 8 8 C 1.47256 * 126.94135 * 359.97438 * 7 2 1 9 9 O 1.21628 * 120.00454 * 359.71121 * 8 7 2 10 10 N 1.34777 * 119.99881 * 179.70750 * 8 7 2 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46684 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47756 * 294.99812 * 12 11 10 14 14 C 1.53009 * 109.46984 * 175.00142 * 12 11 10 15 15 O 1.42906 * 109.46709 * 305.00402 * 14 12 11 16 16 N 1.46497 * 109.47333 * 55.00709 * 12 11 10 17 17 C 1.34779 * 120.00134 * 204.99712 * 16 12 11 18 18 O 1.21278 * 119.99829 * 359.97438 * 17 16 12 19 19 C 1.50700 * 120.00123 * 179.97438 * 17 16 12 20 20 S 1.80995 * 109.47185 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00244 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99623 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00029 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99814 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 119.99981 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47409 * 90.00240 * 25 23 21 27 27 H 1.48503 * 109.47210 * 210.00092 * 25 23 21 28 28 H 1.48498 * 109.47263 * 330.00160 * 25 23 21 29 29 H 1.09002 * 109.46839 * 270.13298 * 1 2 3 30 30 H 1.09001 * 109.47173 * 30.12309 * 1 2 3 31 31 H 1.08994 * 109.47067 * 150.12713 * 1 2 3 32 32 H 1.08002 * 125.57367 * 179.77314 * 5 3 2 33 33 H 1.08003 * 126.82931 * 180.02562 * 6 5 3 34 34 H 0.96995 * 120.00018 * 0.27699 * 10 8 7 35 35 H 1.09000 * 109.47212 * 300.00355 * 11 10 8 36 36 H 1.09001 * 109.46577 * 60.00430 * 11 10 8 37 37 H 1.08996 * 109.46802 * 64.99886 * 14 12 11 38 38 H 1.08996 * 109.47281 * 185.00326 * 14 12 11 39 39 H 0.96699 * 113.99556 * 179.97438 * 15 14 12 40 40 H 0.97001 * 120.00330 * 24.98715 * 16 12 11 41 41 H 1.08995 * 109.47336 * 300.00119 * 19 17 16 42 42 H 1.09006 * 109.46803 * 60.00223 * 19 17 16 43 43 H 0.96997 * 119.99804 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6096 0.7274 -0.0066 6 6 3.6882 -0.6152 -0.0056 7 6 2.3071 -1.1093 0.0024 8 6 1.8702 -2.5156 0.0060 9 8 0.6839 -2.7839 0.0124 10 7 2.7849 -3.5054 0.0022 11 6 2.3502 -4.9045 0.0063 12 6 3.5765 -5.8194 0.0012 13 1 4.1227 -5.6900 -0.9331 14 6 3.1265 -7.2761 0.1313 15 8 2.3122 -7.4208 1.2967 16 7 4.4474 -5.4751 1.1278 17 6 5.7651 -5.7521 1.0702 18 8 6.2298 -6.2869 0.0858 19 6 6.6611 -5.3974 2.2288 20 16 8.3607 -5.8916 1.8506 21 6 9.1661 -5.3751 3.3302 22 1 8.5963 -4.9095 4.1208 23 6 10.5327 -5.5666 3.4796 24 7 11.1344 -5.1803 4.5848 25 14 11.5178 -6.3726 2.1125 26 1 12.0174 -5.3295 1.1811 27 1 12.6690 -7.1058 2.6979 28 1 10.6505 -7.3234 1.3717 29 1 -0.3633 0.0024 1.0277 30 1 -0.3633 0.8889 -0.5157 31 1 -0.3633 -0.8911 -0.5118 32 1 4.4499 1.4059 -0.0116 33 1 4.5890 -1.2110 -0.0094 34 1 3.7310 -3.2915 0.0011 35 1 1.7566 -5.0979 0.8998 36 1 1.7469 -5.1000 -0.8802 37 1 2.5520 -7.5589 -0.7508 38 1 4.0015 -7.9204 0.2170 39 1 1.9902 -8.3209 1.4421 40 1 4.0757 -5.0476 1.9152 41 1 6.6255 -4.3215 2.3995 42 1 6.3213 -5.9188 3.1237 43 1 12.0895 -5.3138 4.6891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281067719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -84.648372 kcal Electronic energy + Delta-G solvation = -26718.403012 eV Core-core repulsion = 22697.430896 eV Total energy + Delta-G solvation = -4020.972117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47629 -39.91203 -38.92996 -37.27104 -35.41994 -33.61270 -32.44413 -31.80236 -31.54965 -30.63271 -28.49022 -26.91884 -25.74822 -25.61611 -22.60410 -21.71041 -20.85914 -20.39626 -19.63944 -18.00409 -17.91691 -17.63253 -16.77515 -16.41648 -16.07151 -15.51887 -15.32375 -15.18217 -14.96087 -14.60189 -14.38397 -14.06161 -13.90236 -13.69161 -13.48558 -13.32180 -13.25516 -12.94413 -12.81474 -12.80823 -12.64847 -12.41978 -11.84671 -11.81564 -11.46659 -11.27480 -11.01975 -10.61654 -10.24193 -9.94412 -9.86578 -9.55815 -9.24833 -9.07287 -9.01061 -8.99651 -8.51231 -8.41978 -6.92579 -6.29470 -4.01211 1.54852 2.20146 2.71766 2.80246 2.91162 3.21407 3.31537 3.35519 3.45670 3.49171 3.64524 4.09058 4.32097 4.46970 4.54986 4.72235 4.73734 4.90351 4.91481 5.00391 5.09578 5.13648 5.18206 5.26610 5.31043 5.36043 5.51563 5.56419 5.62874 5.70638 5.76382 5.86348 5.97078 6.02717 6.32677 6.49387 6.50916 6.66829 7.15002 7.42543 7.49694 7.58985 7.93705 8.24554 8.41751 8.43992 9.16622 10.79840 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.002764 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.093698 B =10128.627309 C =12130.915229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.105 3.895 3 N -0.554 5.554 4 H 0.415 0.585 5 C -0.016 4.016 6 C -0.166 4.166 7 C -0.239 4.239 8 C 0.594 3.406 9 O -0.554 6.554 10 N -0.726 5.726 11 C 0.119 3.881 12 C 0.139 3.861 13 H 0.106 0.894 14 C 0.066 3.934 15 O -0.568 6.568 16 N -0.726 5.726 17 C 0.533 3.467 18 O -0.521 6.521 19 C -0.124 4.124 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.171 0.829 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.380 0.620 40 H 0.404 0.596 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.975 8.647 -10.264 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.013 4.013 3 N -0.149 5.149 4 H 0.252 0.748 5 C -0.143 4.143 6 C -0.190 4.190 7 C -0.249 4.249 8 C 0.383 3.617 9 O -0.434 6.434 10 N -0.378 5.378 11 C -0.005 4.005 12 C 0.034 3.966 13 H 0.124 0.876 14 C -0.014 4.014 15 O -0.374 6.374 16 N -0.380 5.380 17 C 0.319 3.681 18 O -0.396 6.396 19 C -0.275 4.275 20 S 0.085 5.915 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.188 0.812 33 H 0.164 0.836 34 H 0.238 0.762 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.227 0.773 40 H 0.239 0.761 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.746 8.327 -11.750 26.082 hybrid contribution 0.417 0.482 1.144 1.309 sum -21.329 8.809 -10.606 25.397 Atomic orbital electron populations 1.20573 0.87020 1.04124 1.03491 1.20342 0.93693 0.85682 1.01595 1.41618 1.06333 1.08394 1.58577 0.74808 1.21774 0.85605 0.96581 1.10323 1.22108 0.95829 0.93827 1.07201 1.20092 0.93322 0.91944 1.19507 1.17310 0.85124 0.84074 0.75190 1.90727 1.16633 1.84514 1.51489 1.45755 1.10219 1.05658 1.76183 1.21526 0.95670 0.79441 1.03890 1.21259 0.90600 0.92798 0.91989 0.87605 1.22551 0.94442 0.96470 0.87907 1.86457 1.70225 1.34574 1.46103 1.45984 1.07537 1.64170 1.20356 1.20325 0.81730 0.77604 0.88455 1.90697 1.74567 1.41261 1.33074 1.23279 0.99739 1.05272 0.99192 1.84751 0.98340 1.80769 1.27641 1.22320 0.96426 1.46172 1.01918 0.89381 1.24720 0.96733 0.94216 0.95685 1.69941 1.10863 1.45374 1.25535 0.86730 0.81156 0.81357 0.82560 1.19228 1.19986 1.15940 0.90421 0.91931 0.88040 0.81181 0.83558 0.76164 0.89640 0.90312 0.92637 0.92133 0.77317 0.76124 0.88457 0.88408 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.88 36.01 0.36 -0.39 16 2 C 0.11 1.00 7.18 -81.88 -0.59 0.41 16 3 N -0.55 -3.87 5.90 -9.10 -0.05 -3.93 16 4 H 0.42 1.51 8.96 -40.82 -0.37 1.14 16 5 C -0.02 -0.12 11.89 -16.83 -0.20 -0.32 16 6 C -0.17 -1.63 10.56 -37.50 -0.40 -2.02 16 7 C -0.24 -2.70 6.29 -103.35 -0.65 -3.35 16 8 C 0.59 7.50 7.81 -12.60 -0.10 7.40 16 9 O -0.55 -8.27 14.82 5.25 0.08 -8.19 16 10 N -0.73 -7.83 5.39 -61.43 -0.33 -8.16 16 11 C 0.12 1.23 5.12 -4.04 -0.02 1.21 16 12 C 0.14 1.50 2.53 -67.93 -0.17 1.33 16 13 H 0.11 1.21 7.58 -51.93 -0.39 0.82 16 14 C 0.07 0.65 6.85 37.16 0.25 0.91 16 15 O -0.57 -5.47 12.64 -35.23 -0.45 -5.92 16 16 N -0.73 -8.90 4.46 -53.80 -0.24 -9.14 16 17 C 0.53 8.86 7.81 -10.98 -0.09 8.77 16 18 O -0.52 -10.39 15.52 5.56 0.09 -10.31 16 19 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 20 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 21 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 22 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 23 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 24 N -0.88 -26.42 13.97 55.49 0.78 -25.65 16 25 Si 0.86 21.55 27.74 -169.99 -4.71 16.83 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.99 6.47 -51.93 -0.34 0.66 16 32 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.15 1.31 7.70 -52.48 -0.40 0.90 16 34 H 0.40 4.08 7.26 -40.82 -0.30 3.78 16 35 H 0.09 0.99 7.39 -51.93 -0.38 0.60 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.38 2.16 9.12 45.56 0.42 2.58 16 40 H 0.40 4.46 8.60 -40.82 -0.35 4.11 16 41 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -37.12 382.00 -7.32 -44.44 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.07 Total: 9.77 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.16 Total: -0.02 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.15 Total: -46.88 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.28 Total: -24.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.12 -7.32 -44.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281067719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.208 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds