Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30610 * 125.42120 * 2 1 4 4 C 1.33693 * 108.99432 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.27739 * 180.02562 * 4 3 2 6 6 C 1.36340 * 107.45344 * 0.02562 * 4 3 2 7 7 C 1.46725 * 126.64652 * 179.97438 * 6 4 3 8 8 O 1.21683 * 119.99962 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99832 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99665 * 179.72438 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99877 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00391 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47011 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99974 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99699 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00142 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47106 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47395 * 119.99876 * 22 20 18 25 25 H 1.48504 * 109.46807 * 240.00079 * 22 20 18 26 26 O 1.33668 * 125.42049 * 180.29598 * 2 1 3 27 27 H 1.09002 * 109.47592 * 90.01933 * 1 2 3 28 28 H 1.09007 * 109.47099 * 210.02222 * 1 2 3 29 29 H 1.09006 * 109.47039 * 330.01864 * 1 2 3 30 30 H 1.09002 * 109.46990 * 269.97645 * 5 4 3 31 31 H 1.09000 * 109.47375 * 29.97383 * 5 4 3 32 32 H 1.08998 * 109.47682 * 149.97454 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 37 37 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 38 38 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 39 39 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 40 40 H 0.96992 * 119.99973 * 359.97438 * 13 12 11 41 41 H 1.09002 * 109.46788 * 299.98995 * 16 14 13 42 42 H 1.08998 * 109.47474 * 59.99475 * 16 14 13 43 43 H 0.96995 * 120.00076 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5463 0.6863 -0.0006 5 6 4.7452 1.5994 -0.0002 6 6 3.5708 -0.6769 -0.0015 7 6 4.7635 -1.5314 -0.0029 8 8 5.8718 -1.0291 -0.0029 9 7 4.6315 -2.8727 -0.0032 10 6 5.8224 -3.7259 -0.0107 11 6 5.3968 -5.1956 -0.0164 12 6 6.6406 -6.0865 -0.0249 13 7 6.2331 -7.4938 -0.0310 14 6 7.1668 -8.4657 -0.0385 15 8 8.3444 -8.1754 -0.0406 16 6 6.7476 -9.9132 -0.0453 17 16 8.2190 -10.9673 -0.0552 18 6 7.4572 -12.5561 -0.0611 19 1 6.3803 -12.6386 -0.0579 20 6 8.2409 -13.7016 -0.0700 21 7 9.5534 -13.6010 -0.0744 22 14 7.4332 -15.3859 -0.0770 23 1 5.9567 -15.2269 -0.0710 24 1 7.8466 -16.1282 -1.2949 25 1 7.8541 -16.1417 1.1301 26 8 2.2817 -1.0893 -0.0056 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5136 30 1 5.0342 1.8199 -1.0278 31 1 4.4950 2.5274 0.5139 32 1 5.5735 1.1115 0.5134 33 1 3.7480 -3.2732 -0.0029 34 1 6.4144 -3.5156 -0.9015 35 1 6.4196 -3.5241 0.8785 36 1 4.8048 -5.4058 0.8742 37 1 4.7997 -5.3975 -0.9057 38 1 7.2322 -5.8762 -0.9158 39 1 7.2382 -5.8848 0.8642 40 1 5.2914 -7.7260 -0.0290 41 1 6.1552 -10.1241 0.8450 42 1 6.1509 -10.1145 -0.9349 43 1 10.1010 -14.4015 -0.0802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283185869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = -64.882563 kcal Electronic energy + Delta-G solvation = -25061.023739 eV Core-core repulsion = 21040.908732 eV Total energy + Delta-G solvation = -4020.115007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.98037 -40.06724 -39.20992 -36.59976 -35.82163 -34.55739 -33.35753 -32.44844 -31.78276 -29.89818 -29.34239 -27.95961 -25.64325 -25.21967 -22.71605 -22.37418 -22.07988 -21.01294 -20.40197 -18.67706 -17.82478 -17.62064 -16.81159 -16.37702 -16.35607 -16.17730 -15.69762 -15.32112 -14.82365 -14.78178 -14.58745 -14.54707 -13.90204 -13.82581 -13.65473 -13.53034 -13.26450 -13.17245 -13.12100 -12.72008 -12.63504 -12.37177 -12.02059 -12.00357 -11.50474 -11.39379 -11.38808 -11.08620 -11.03982 -10.78052 -10.64251 -9.82805 -9.75765 -9.46074 -9.26304 -9.09886 -8.95743 -8.25365 -6.52174 -6.23608 -3.94383 0.26790 1.81083 1.84714 2.54424 2.57493 3.02225 3.05571 3.20095 3.26687 3.30509 3.32755 3.67197 4.13039 4.17298 4.18369 4.50176 4.51962 4.59390 4.63463 4.69119 4.78929 5.01095 5.10665 5.11705 5.12401 5.15295 5.22376 5.23204 5.38533 5.42687 5.47937 5.58462 5.71181 5.74933 5.84612 5.86468 5.87284 6.10511 6.53183 6.76593 7.07959 7.50655 7.57856 7.63891 8.33444 8.56322 9.21846 10.83900 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028742 B = 0.001378 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.952904 B =20314.953916 C =21247.224874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.224 3.776 3 N -0.491 5.491 4 C 0.088 3.912 5 C -0.083 4.083 6 C -0.126 4.126 7 C 0.611 3.389 8 O -0.510 6.510 9 N -0.718 5.718 10 C 0.121 3.879 11 C -0.144 4.144 12 C 0.125 3.875 13 N -0.740 5.740 14 C 0.531 3.469 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 O -0.190 6.190 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.406 0.594 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.558 28.434 0.201 35.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.019 3.981 3 N -0.221 5.221 4 C -0.036 4.036 5 C -0.140 4.140 6 C -0.180 4.180 7 C 0.396 3.604 8 O -0.387 6.387 9 N -0.369 5.369 10 C -0.002 4.002 11 C -0.182 4.182 12 C 0.000 4.000 13 N -0.395 5.395 14 C 0.317 3.683 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 O -0.078 6.078 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.240 0.760 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.839 29.707 0.197 34.653 hybrid contribution -2.664 -2.459 -0.032 3.626 sum -20.503 27.249 0.165 34.101 Atomic orbital electron populations 1.20426 0.80548 1.05765 1.05313 1.26614 0.96716 0.78543 0.96245 1.70387 1.01638 1.29933 1.20165 1.22121 0.93509 0.91276 0.96718 1.20432 0.92123 0.97545 1.03932 1.22816 0.82332 0.95184 1.17718 1.16251 0.85492 0.81532 0.77112 1.90893 1.23678 1.73793 1.50307 1.45855 1.10901 1.05400 1.74779 1.21358 0.86867 0.88239 1.03759 1.21982 0.99006 0.93451 1.03730 1.21093 0.95576 0.80298 1.03053 1.45958 1.09838 1.05489 1.78231 1.20325 0.85748 0.87063 0.75132 1.90715 1.17390 1.83556 1.47289 1.23530 1.07314 0.94625 1.04931 1.85424 1.03305 0.97958 1.96712 1.22909 0.95153 0.91427 1.58921 0.90867 1.24994 0.94794 0.99273 0.94515 1.70025 1.03644 1.29694 1.46878 0.86114 0.79242 0.82188 0.77920 1.19636 1.20551 1.20556 1.84428 1.16142 1.37401 1.69792 0.88218 0.88749 0.87555 0.89776 0.90299 0.88500 0.75955 0.90286 0.90276 0.90338 0.90349 0.91139 0.91134 0.76816 0.89203 0.89201 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.13 10.51 36.00 0.38 0.25 16 2 C 0.22 1.56 8.32 -12.80 -0.11 1.45 16 3 N -0.49 -4.56 11.26 -7.07 -0.08 -4.64 16 4 C 0.09 0.84 7.16 -82.47 -0.59 0.25 16 5 C -0.08 -0.65 9.87 36.00 0.36 -0.30 16 6 C -0.13 -1.17 7.18 -36.84 -0.26 -1.43 16 7 C 0.61 5.88 7.79 -12.83 -0.10 5.78 16 8 O -0.51 -6.17 14.79 5.20 0.08 -6.09 16 9 N -0.72 -5.08 5.55 -61.60 -0.34 -5.42 16 10 C 0.12 0.86 5.67 -4.04 -0.02 0.83 16 11 C -0.14 -0.88 5.44 -26.73 -0.15 -1.02 16 12 C 0.12 1.26 5.67 -4.04 -0.02 1.23 16 13 N -0.74 -8.99 5.56 -60.29 -0.33 -9.33 16 14 C 0.53 9.59 7.85 -10.98 -0.09 9.50 16 15 O -0.52 -11.54 15.86 5.55 0.09 -11.45 16 16 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 22 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 O -0.19 -1.48 10.57 4.41 0.05 -1.44 16 27 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.83 6.47 -51.93 -0.34 0.49 16 33 H 0.41 2.04 8.27 -40.82 -0.34 1.70 16 34 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.40 3.55 8.47 -40.82 -0.35 3.20 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -37.96 390.05 -7.41 -45.37 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.06 Total: -0.84 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.19 Total: 0.90 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.02 Total: -44.69 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.21 Total: -18.98 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.96 -7.41 -45.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283185869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.509 kcal (2) G-P(sol) polarization free energy of solvation -37.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds