Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30610 * 125.42120 * 2 1 4 4 C 1.33693 * 108.99432 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.27739 * 180.02562 * 4 3 2 6 6 C 1.36340 * 107.45344 * 0.02562 * 4 3 2 7 7 C 1.46725 * 126.64652 * 179.97438 * 6 4 3 8 8 O 1.21683 * 119.99962 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99832 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99665 * 179.72438 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99877 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00391 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47011 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99974 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99699 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00142 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47106 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47395 * 119.99876 * 22 20 18 25 25 H 1.48504 * 109.46807 * 240.00079 * 22 20 18 26 26 O 1.33668 * 125.42049 * 180.29598 * 2 1 3 27 27 H 1.09002 * 109.47592 * 90.01933 * 1 2 3 28 28 H 1.09007 * 109.47099 * 210.02222 * 1 2 3 29 29 H 1.09006 * 109.47039 * 330.01864 * 1 2 3 30 30 H 1.09002 * 109.46990 * 269.97645 * 5 4 3 31 31 H 1.09000 * 109.47375 * 29.97383 * 5 4 3 32 32 H 1.08998 * 109.47682 * 149.97454 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 37 37 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 38 38 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 39 39 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 40 40 H 0.96992 * 119.99973 * 359.97438 * 13 12 11 41 41 H 1.09002 * 109.46788 * 299.98995 * 16 14 13 42 42 H 1.08998 * 109.47474 * 59.99475 * 16 14 13 43 43 H 0.96995 * 120.00076 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5463 0.6863 -0.0006 5 6 4.7452 1.5994 -0.0002 6 6 3.5708 -0.6769 -0.0015 7 6 4.7635 -1.5314 -0.0029 8 8 5.8718 -1.0291 -0.0029 9 7 4.6315 -2.8727 -0.0032 10 6 5.8224 -3.7259 -0.0107 11 6 5.3968 -5.1956 -0.0164 12 6 6.6406 -6.0865 -0.0249 13 7 6.2331 -7.4938 -0.0310 14 6 7.1668 -8.4657 -0.0385 15 8 8.3444 -8.1754 -0.0406 16 6 6.7476 -9.9132 -0.0453 17 16 8.2190 -10.9673 -0.0552 18 6 7.4572 -12.5561 -0.0611 19 1 6.3803 -12.6386 -0.0579 20 6 8.2409 -13.7016 -0.0700 21 7 9.5534 -13.6010 -0.0744 22 14 7.4332 -15.3859 -0.0770 23 1 5.9567 -15.2269 -0.0710 24 1 7.8466 -16.1282 -1.2949 25 1 7.8541 -16.1417 1.1301 26 8 2.2817 -1.0893 -0.0056 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5136 30 1 5.0342 1.8199 -1.0278 31 1 4.4950 2.5274 0.5139 32 1 5.5735 1.1115 0.5134 33 1 3.7480 -3.2732 -0.0029 34 1 6.4144 -3.5156 -0.9015 35 1 6.4196 -3.5241 0.8785 36 1 4.8048 -5.4058 0.8742 37 1 4.7997 -5.3975 -0.9057 38 1 7.2322 -5.8762 -0.9158 39 1 7.2382 -5.8848 0.8642 40 1 5.2914 -7.7260 -0.0290 41 1 6.1552 -10.1241 0.8450 42 1 6.1509 -10.1145 -0.9349 43 1 10.1010 -14.4015 -0.0802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283185869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = -96.488779 kcal Electronic energy + Delta-G solvation = -25062.394287 eV Core-core repulsion = 21040.908732 eV Total energy + Delta-G solvation = -4021.485555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.56676 -40.82489 -40.53289 -37.39680 -36.49708 -35.53954 -34.57973 -33.85779 -32.74120 -30.65980 -30.31997 -28.67568 -27.67722 -26.14830 -23.33866 -22.99585 -22.72253 -21.73317 -21.66825 -19.86092 -19.27334 -18.21410 -17.74970 -17.62549 -17.12714 -16.88236 -16.81716 -16.79720 -16.38797 -15.82013 -15.51357 -15.27665 -15.17221 -14.69044 -14.38623 -14.37036 -14.13390 -14.08106 -13.85187 -13.50016 -13.37609 -13.25509 -13.16585 -13.14981 -12.90992 -12.65000 -12.57366 -12.12837 -12.09141 -12.03651 -11.70592 -11.37791 -11.15473 -10.96811 -10.42907 -10.25975 -10.11920 -9.86092 -8.66245 -8.34308 -6.12418 -0.35658 1.21849 1.24719 1.28670 1.42087 1.48094 1.58662 1.62220 1.87319 1.94056 2.27374 2.36739 2.86007 3.00168 3.32780 3.56433 3.57673 3.84231 3.93218 3.95092 4.10393 4.24806 4.30089 4.31756 4.50078 4.52797 4.55413 4.58887 4.61578 4.63794 4.72583 4.75113 4.85193 5.01330 5.06805 5.10312 5.19877 5.28221 5.42570 5.43436 6.17036 6.20589 6.48975 6.52433 6.86340 7.07284 7.26312 8.75194 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028742 B = 0.001378 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.952904 B =20314.953916 C =21247.224874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.234 3.766 3 N -0.521 5.521 4 C 0.074 3.926 5 C -0.081 4.081 6 C -0.142 4.142 7 C 0.609 3.391 8 O -0.543 6.543 9 N -0.703 5.703 10 C 0.123 3.877 11 C -0.123 4.123 12 C 0.121 3.879 13 N -0.711 5.711 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.129 4.129 17 S -0.156 6.156 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.275 1.275 26 O -0.188 6.188 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.418 0.582 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.419 0.581 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.491 28.164 0.171 37.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.029 3.971 3 N -0.251 5.251 4 C -0.050 4.050 5 C -0.138 4.138 6 C -0.197 4.197 7 C 0.395 3.605 8 O -0.423 6.423 9 N -0.355 5.355 10 C -0.001 4.001 11 C -0.161 4.161 12 C -0.003 4.003 13 N -0.365 5.365 14 C 0.317 3.683 15 O -0.446 6.446 16 C -0.280 4.280 17 S 0.071 5.929 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.200 1.200 26 O -0.076 6.076 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.255 0.745 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.256 0.744 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.862 29.454 0.168 36.682 hybrid contribution -1.571 -2.221 -0.023 2.721 sum -23.433 27.233 0.145 35.927 Atomic orbital electron populations 1.20769 0.77047 1.07298 1.06903 1.27687 0.98235 0.77780 0.93416 1.70415 1.01701 1.31111 1.21902 1.22423 0.94170 0.91827 0.96572 1.20417 0.91485 0.97649 1.04209 1.22688 0.82867 0.95068 1.19103 1.16342 0.85199 0.82176 0.76822 1.90872 1.24878 1.74495 1.52035 1.45710 1.11549 1.04573 1.73628 1.21295 0.86816 0.88839 1.03136 1.21805 0.97179 0.91431 1.05723 1.21216 0.97492 0.79380 1.02210 1.45653 1.09977 1.05344 1.75562 1.20090 0.85704 0.87334 0.75134 1.90706 1.19659 1.84083 1.50150 1.23372 1.03575 0.94115 1.06956 1.85627 1.09688 1.00543 1.97056 1.23248 0.95656 0.91686 1.58718 0.89765 1.26132 0.95321 1.03974 0.93749 1.70192 1.05530 1.31030 1.48111 0.84898 0.78819 0.76153 0.78017 1.17898 1.20013 1.20018 1.84429 1.15561 1.37626 1.69980 0.86344 0.86582 0.86570 0.89298 0.89330 0.89526 0.74488 0.91061 0.91037 0.88323 0.88341 0.92141 0.92130 0.74357 0.87024 0.87028 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.07 10.51 71.24 0.75 0.68 16 2 C 0.23 2.85 8.32 88.29 0.73 3.58 16 3 N -0.52 -9.29 11.26 -291.07 -3.28 -12.56 16 4 C 0.07 1.42 7.16 41.83 0.30 1.72 16 5 C -0.08 -1.31 9.87 71.23 0.70 -0.60 16 6 C -0.14 -2.59 7.18 24.05 0.17 -2.41 16 7 C 0.61 11.54 7.79 86.46 0.67 12.21 16 8 O -0.54 -13.50 14.79 -4.29 -0.06 -13.56 16 9 N -0.70 -8.88 5.55 -467.03 -2.59 -11.47 16 10 C 0.12 1.57 5.67 86.38 0.49 2.06 16 11 C -0.12 -1.14 5.44 30.59 0.17 -0.97 16 12 C 0.12 2.24 5.67 86.38 0.49 2.74 16 13 N -0.71 -15.52 5.56 -463.05 -2.57 -18.09 16 14 C 0.53 18.68 7.85 87.66 0.69 19.37 16 15 O -0.57 -25.87 15.86 -3.04 -0.05 -25.92 16 16 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 17 S -0.16 -8.59 20.57 -56.49 -1.16 -9.75 16 18 C -0.55 -30.76 9.50 67.95 0.65 -30.12 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.73 5.49 84.86 0.47 1.19 16 21 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 22 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 O -0.19 -2.65 10.57 -7.12 -0.08 -2.72 16 27 H 0.12 -0.23 8.14 -2.39 -0.02 -0.24 16 28 H 0.12 -0.33 8.14 -2.38 -0.02 -0.35 16 29 H 0.12 -0.04 8.14 -2.38 -0.02 -0.06 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.58 6.47 -2.39 -0.02 1.56 16 33 H 0.42 3.14 8.27 -92.71 -0.77 2.38 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.42 5.79 8.47 -92.71 -0.79 5.01 16 41 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 42 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -86.47 390.05 -1.25 -87.72 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.49 Total: 11.80 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.72 Total: 4.99 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -8.16 Total: -97.68 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.19 Total: -42.20 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -86.47 -1.25 -87.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283185869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.769 kcal (2) G-P(sol) polarization free energy of solvation -86.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds