Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41266 * 126.70386 * 2 1 4 4 C 1.36821 * 103.84797 * 180.13882 * 3 2 1 5 5 C 1.47512 * 126.94856 * 179.87633 * 4 3 2 6 6 O 1.21584 * 119.99571 * 353.95014 * 5 4 3 7 7 N 1.34767 * 120.00340 * 173.67293 * 5 4 3 8 8 C 1.46498 * 120.00087 * 354.75523 * 7 5 4 9 9 C 1.46507 * 120.00264 * 174.76007 * 7 5 4 10 10 C 1.53002 * 109.46983 * 89.99819 * 9 7 5 11 11 C 1.53003 * 109.46719 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46943 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00023 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00064 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00053 * 180.02562 * 13 12 11 16 16 S 1.81009 * 109.47283 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00103 * 179.97438 * 16 15 13 18 18 H 1.08009 * 119.99760 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99943 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99964 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99876 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46967 * 89.99720 * 21 19 17 23 23 H 1.48498 * 109.46800 * 209.99460 * 21 19 17 24 24 H 1.48494 * 109.47009 * 329.99947 * 21 19 17 25 25 O 1.34642 * 106.11034 * 359.61551 * 4 3 2 26 26 N 1.20887 * 111.47057 * 0.26203 * 25 4 3 27 27 H 1.09004 * 109.46622 * 270.27552 * 1 2 3 28 28 H 1.08992 * 109.47295 * 30.27573 * 1 2 3 29 29 H 1.08998 * 109.46851 * 150.27838 * 1 2 3 30 30 H 1.07997 * 128.07539 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46692 * 85.26720 * 8 7 5 32 32 H 1.08999 * 109.47725 * 205.26437 * 8 7 5 33 33 H 1.08998 * 109.47327 * 325.27107 * 8 7 5 34 34 H 1.08994 * 109.47272 * 210.00212 * 9 7 5 35 35 H 1.09002 * 109.46802 * 330.00381 * 9 7 5 36 36 H 1.08999 * 109.47054 * 299.99667 * 10 9 7 37 37 H 1.08995 * 109.47245 * 60.00572 * 10 9 7 38 38 H 1.08994 * 109.47206 * 300.00190 * 11 10 9 39 39 H 1.09002 * 109.47133 * 60.00521 * 11 10 9 40 40 H 0.96999 * 119.99458 * 0.02562 * 12 11 10 41 41 H 1.09000 * 109.47405 * 299.99484 * 15 13 12 42 42 H 1.09001 * 109.47508 * 59.99999 * 15 13 12 43 43 H 0.96999 * 119.99844 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6012 -0.0032 5 6 4.8871 1.3431 -0.0072 6 8 4.8855 2.5538 -0.1188 7 7 6.0533 0.6795 0.1186 8 6 6.0514 -0.7630 0.3742 9 6 7.3230 1.4007 -0.0002 10 6 7.7550 1.9033 1.3788 11 6 9.0807 2.6571 1.2546 12 7 9.4940 3.1389 2.5749 13 6 10.6401 3.8351 2.7098 14 8 11.3295 4.0623 1.7382 15 6 11.0655 4.3302 4.0680 16 16 12.6338 5.2220 3.9211 17 6 12.8866 5.6759 5.6047 18 1 12.1650 5.3892 6.3555 19 6 14.0130 6.4019 5.9662 20 7 14.8926 6.7508 5.0512 21 14 14.2806 6.8837 7.7511 22 1 15.0509 5.8180 8.4413 23 1 15.0379 8.1596 7.8111 24 1 12.9660 7.0562 8.4196 25 8 3.4540 -0.7359 0.0038 26 7 2.2848 -1.0432 0.0055 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8874 -0.5181 29 1 -0.3633 -0.8925 -0.5095 30 1 2.0678 2.1747 0.0004 31 1 5.9732 -1.2994 -0.5715 32 1 6.9773 -1.0444 0.8759 33 1 5.2024 -1.0186 1.0081 34 1 8.0854 0.7310 -0.3981 35 1 7.1974 2.2490 -0.6732 36 1 6.9926 2.5731 1.7766 37 1 7.8806 1.0552 2.0517 38 1 9.8432 1.9877 0.8565 39 1 8.9547 3.5053 0.5818 40 1 8.9428 2.9568 3.3520 41 1 10.3027 4.9993 4.4662 42 1 11.1920 3.4820 4.7408 43 1 15.6800 7.2579 5.3039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283495335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -10.528514 kcal Electronic energy + Delta-G solvation = -25548.782356 eV Core-core repulsion = 21531.024318 eV Total energy + Delta-G solvation = -4017.758038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.55972 -40.41096 -39.13867 -36.80720 -35.48646 -34.98400 -32.90235 -32.42114 -31.72800 -29.39528 -29.18107 -27.46684 -26.29684 -25.44590 -23.81374 -23.12912 -21.93988 -20.45199 -19.95721 -18.40778 -18.23595 -17.82981 -17.03742 -16.78557 -16.31467 -15.79033 -15.70707 -15.62212 -14.80075 -14.77416 -14.39402 -14.26082 -13.97557 -13.90114 -13.82202 -13.63780 -13.31695 -13.11877 -12.98583 -12.80622 -12.61163 -12.42946 -11.99233 -11.85465 -11.81327 -11.14204 -11.05474 -11.01621 -10.81182 -10.75302 -10.65599 -10.26056 -9.81093 -9.49791 -9.25088 -9.06329 -8.88392 -8.22650 -6.49035 -6.20855 -3.91365 0.26121 1.48707 1.97766 2.39293 2.57085 3.05874 3.11231 3.22953 3.28756 3.33287 3.50556 3.71236 3.75823 4.21259 4.23985 4.45892 4.52668 4.57920 4.70004 4.75383 4.76728 4.89643 4.97833 5.03603 5.09214 5.14347 5.15499 5.20115 5.24493 5.27985 5.47561 5.50786 5.63206 5.77610 5.84128 5.91700 5.97723 6.15112 6.58895 6.61482 7.30177 7.57185 7.60326 7.71060 8.36013 8.62201 9.24482 10.86602 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.001492 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.665887 B =18766.378716 C =19217.168749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.012 3.988 3 C -0.149 4.149 4 C -0.082 4.082 5 C 0.602 3.398 6 O -0.504 6.504 7 N -0.602 5.602 8 C 0.070 3.930 9 C 0.119 3.881 10 C -0.148 4.148 11 C 0.125 3.875 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.518 6.518 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 O 0.118 5.882 26 N -0.349 5.349 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.184 0.816 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.050 -17.913 -10.426 34.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.146 4.146 3 C -0.172 4.172 4 C -0.148 4.148 5 C 0.387 3.613 6 O -0.379 6.379 7 N -0.335 5.335 8 C -0.072 4.072 9 C -0.003 4.003 10 C -0.187 4.187 11 C 0.000 4.000 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 O 0.046 5.954 26 N -0.051 5.051 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.202 0.798 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.942 -18.098 -12.169 34.663 hybrid contribution -0.985 0.632 2.711 2.953 sum -27.927 -17.466 -9.458 34.270 Atomic orbital electron populations 1.20235 0.85139 1.04273 1.03864 1.23681 0.99488 0.88206 1.03195 1.22916 0.89953 1.01886 1.02405 1.24176 0.97254 0.84048 1.09318 1.16642 0.81044 0.85984 0.77635 1.90915 1.85617 1.11942 1.49458 1.47737 1.05668 1.09773 1.70284 1.22056 1.04037 0.78865 1.02283 1.21526 0.83414 0.97770 0.97593 1.22153 0.97580 1.00940 0.97983 1.21128 0.94645 0.98461 0.85794 1.45969 1.24999 1.58339 1.10084 1.20304 0.79919 0.76983 0.91038 1.90703 1.52647 1.55478 1.40343 1.23532 1.06450 1.04298 0.96142 1.85395 1.17723 1.67546 1.12713 1.22874 1.11019 1.41139 0.93388 0.90933 1.24987 0.94909 0.95063 0.98590 1.70018 1.10841 1.36265 1.33161 0.86168 0.78394 0.78064 0.82873 1.20278 1.20741 1.19713 1.85119 1.21204 1.22106 1.66991 1.73728 0.89533 1.24471 1.17336 0.89738 0.89559 0.90170 0.79837 0.91455 0.89656 0.90471 0.89124 0.88890 0.90525 0.90897 0.91423 0.91305 0.76836 0.89214 0.89237 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.47 36.01 0.38 0.10 16 2 C 0.01 0.08 7.31 -82.16 -0.60 -0.52 16 3 C -0.15 -1.07 10.92 -38.94 -0.43 -1.50 16 4 C -0.08 -0.66 6.82 -36.32 -0.25 -0.91 16 5 C 0.60 5.47 7.66 -12.48 -0.10 5.37 16 6 O -0.50 -6.13 16.56 5.29 0.09 -6.04 16 7 N -0.60 -4.15 2.87 -182.82 -0.53 -4.68 16 8 C 0.07 0.30 9.40 59.85 0.56 0.87 16 9 C 0.12 0.81 5.34 -4.04 -0.02 0.79 16 10 C -0.15 -1.13 5.65 -26.73 -0.15 -1.28 16 11 C 0.12 1.35 5.67 -4.04 -0.02 1.33 16 12 N -0.74 -9.70 5.56 -60.29 -0.33 -10.03 16 13 C 0.53 9.92 7.85 -10.99 -0.09 9.84 16 14 O -0.52 -11.78 15.86 5.55 0.09 -11.69 16 15 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 21 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 O 0.12 0.92 8.24 15.55 0.13 1.05 16 26 N -0.35 -2.96 12.04 33.52 0.40 -2.56 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.24 8.04 -51.93 -0.42 -0.17 16 33 H 0.08 0.35 5.95 -51.93 -0.31 0.04 16 34 H 0.09 0.43 8.07 -51.93 -0.42 0.02 16 35 H 0.09 0.75 7.50 -51.93 -0.39 0.36 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.40 4.08 8.47 -40.82 -0.35 3.73 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -37.39 387.67 -7.18 -44.57 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.08 Total: -1.69 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.29 Total: -1.83 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.28 Total: -42.77 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.30 Total: -16.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.39 -7.18 -44.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283495335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.043 kcal (2) G-P(sol) polarization free energy of solvation -37.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds