Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41266 * 126.70386 * 2 1 4 4 C 1.36821 * 103.84797 * 180.13882 * 3 2 1 5 5 C 1.47512 * 126.94856 * 179.87633 * 4 3 2 6 6 O 1.21584 * 119.99571 * 353.95014 * 5 4 3 7 7 N 1.34767 * 120.00340 * 173.67293 * 5 4 3 8 8 C 1.46498 * 120.00087 * 354.75523 * 7 5 4 9 9 C 1.46507 * 120.00264 * 174.76007 * 7 5 4 10 10 C 1.53002 * 109.46983 * 89.99819 * 9 7 5 11 11 C 1.53003 * 109.46719 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46943 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00023 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00064 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00053 * 180.02562 * 13 12 11 16 16 S 1.81009 * 109.47283 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00103 * 179.97438 * 16 15 13 18 18 H 1.08009 * 119.99760 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99943 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99964 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99876 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46967 * 89.99720 * 21 19 17 23 23 H 1.48498 * 109.46800 * 209.99460 * 21 19 17 24 24 H 1.48494 * 109.47009 * 329.99947 * 21 19 17 25 25 O 1.34642 * 106.11034 * 359.61551 * 4 3 2 26 26 N 1.20887 * 111.47057 * 0.26203 * 25 4 3 27 27 H 1.09004 * 109.46622 * 270.27552 * 1 2 3 28 28 H 1.08992 * 109.47295 * 30.27573 * 1 2 3 29 29 H 1.08998 * 109.46851 * 150.27838 * 1 2 3 30 30 H 1.07997 * 128.07539 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46692 * 85.26720 * 8 7 5 32 32 H 1.08999 * 109.47725 * 205.26437 * 8 7 5 33 33 H 1.08998 * 109.47327 * 325.27107 * 8 7 5 34 34 H 1.08994 * 109.47272 * 210.00212 * 9 7 5 35 35 H 1.09002 * 109.46802 * 330.00381 * 9 7 5 36 36 H 1.08999 * 109.47054 * 299.99667 * 10 9 7 37 37 H 1.08995 * 109.47245 * 60.00572 * 10 9 7 38 38 H 1.08994 * 109.47206 * 300.00190 * 11 10 9 39 39 H 1.09002 * 109.47133 * 60.00521 * 11 10 9 40 40 H 0.96999 * 119.99458 * 0.02562 * 12 11 10 41 41 H 1.09000 * 109.47405 * 299.99484 * 15 13 12 42 42 H 1.09001 * 109.47508 * 59.99999 * 15 13 12 43 43 H 0.96999 * 119.99844 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6012 -0.0032 5 6 4.8871 1.3431 -0.0072 6 8 4.8855 2.5538 -0.1188 7 7 6.0533 0.6795 0.1186 8 6 6.0514 -0.7630 0.3742 9 6 7.3230 1.4007 -0.0002 10 6 7.7550 1.9033 1.3788 11 6 9.0807 2.6571 1.2546 12 7 9.4940 3.1389 2.5749 13 6 10.6401 3.8351 2.7098 14 8 11.3295 4.0623 1.7382 15 6 11.0655 4.3302 4.0680 16 16 12.6338 5.2220 3.9211 17 6 12.8866 5.6759 5.6047 18 1 12.1650 5.3892 6.3555 19 6 14.0130 6.4019 5.9662 20 7 14.8926 6.7508 5.0512 21 14 14.2806 6.8837 7.7511 22 1 15.0509 5.8180 8.4413 23 1 15.0379 8.1596 7.8111 24 1 12.9660 7.0562 8.4196 25 8 3.4540 -0.7359 0.0038 26 7 2.2848 -1.0432 0.0055 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8874 -0.5181 29 1 -0.3633 -0.8925 -0.5095 30 1 2.0678 2.1747 0.0004 31 1 5.9732 -1.2994 -0.5715 32 1 6.9773 -1.0444 0.8759 33 1 5.2024 -1.0186 1.0081 34 1 8.0854 0.7310 -0.3981 35 1 7.1974 2.2490 -0.6732 36 1 6.9926 2.5731 1.7766 37 1 7.8806 1.0552 2.0517 38 1 9.8432 1.9877 0.8565 39 1 8.9547 3.5053 0.5818 40 1 8.9428 2.9568 3.3520 41 1 10.3027 4.9993 4.4662 42 1 11.1920 3.4820 4.7408 43 1 15.6800 7.2579 5.3039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283495335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -37.384097 kcal Electronic energy + Delta-G solvation = -25549.946901 eV Core-core repulsion = 21531.024318 eV Total energy + Delta-G solvation = -4018.922584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.11608 -41.09041 -40.54652 -37.53836 -36.24897 -35.77537 -34.58032 -33.65994 -32.60543 -30.66772 -29.65461 -28.00951 -27.68248 -27.01503 -24.46571 -23.76349 -22.65292 -21.75679 -20.59921 -19.81647 -18.97875 -18.80225 -17.79448 -17.77886 -17.39360 -16.89661 -16.85593 -16.79043 -16.38224 -15.83093 -15.68133 -15.16734 -14.82471 -14.64073 -14.41302 -14.29001 -14.24153 -14.14525 -13.87523 -13.69219 -13.38861 -13.25130 -13.15997 -12.97484 -12.87660 -12.68389 -12.58841 -12.42099 -11.84198 -11.72800 -11.51659 -11.14720 -11.13723 -10.99003 -10.86110 -10.27229 -10.10776 -9.89346 -8.66143 -8.34119 -6.12283 -0.34170 0.96117 1.26806 1.38397 1.43045 1.48312 1.58350 1.62262 1.75975 2.00421 2.27389 2.35193 3.00093 3.05297 3.23076 3.32901 3.72664 3.88847 3.93237 3.96631 3.97678 4.16130 4.27803 4.29899 4.31260 4.44979 4.51897 4.58167 4.62876 4.67361 4.71415 4.78397 4.79733 4.96018 5.04350 5.10849 5.17293 5.34382 5.42314 5.45170 6.01566 6.20344 6.50983 6.67889 7.00819 7.07218 7.25183 8.75154 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.001492 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.665887 B =18766.378716 C =19217.168749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.013 3.987 3 C -0.152 4.152 4 C -0.092 4.092 5 C 0.599 3.401 6 O -0.544 6.544 7 N -0.595 5.595 8 C 0.066 3.934 9 C 0.118 3.882 10 C -0.131 4.131 11 C 0.124 3.876 12 N -0.714 5.714 13 C 0.533 3.467 14 O -0.566 6.566 15 C -0.130 4.130 16 S -0.152 6.152 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.259 1.259 25 O 0.119 5.881 26 N -0.371 5.371 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.196 0.804 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.904 -19.425 -8.926 36.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C -0.174 4.174 4 C -0.158 4.158 5 C 0.385 3.615 6 O -0.422 6.422 7 N -0.326 5.326 8 C -0.076 4.076 9 C -0.004 4.004 10 C -0.170 4.170 11 C -0.001 4.001 12 N -0.368 5.368 13 C 0.318 3.682 14 O -0.444 6.444 15 C -0.281 4.281 16 S 0.075 5.925 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.183 1.183 25 O 0.048 5.952 26 N -0.074 5.074 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.213 0.787 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.841 -19.677 -10.654 36.503 hybrid contribution -0.530 1.003 2.174 2.452 sum -29.371 -18.674 -8.480 35.823 Atomic orbital electron populations 1.20408 0.82936 1.05322 1.04924 1.24187 1.00859 0.87541 1.01873 1.23200 0.89808 1.02655 1.01742 1.24121 0.97241 0.84361 1.10064 1.16801 0.81804 0.85623 0.77268 1.90890 1.86236 1.13518 1.51592 1.47818 1.05007 1.10763 1.68977 1.22262 1.05122 0.77119 1.03072 1.21556 0.83987 0.98076 0.96803 1.22001 0.95095 1.00939 0.98948 1.21267 0.96397 0.98313 0.84081 1.45738 1.23042 1.56063 1.11928 1.20054 0.81014 0.77407 0.89690 1.90692 1.54590 1.57743 1.41398 1.23380 1.02444 1.04389 0.97936 1.85571 1.23431 1.69529 1.13956 1.23216 1.11576 1.41317 0.93433 0.89909 1.26121 0.94401 0.94741 1.03812 1.70183 1.11550 1.37181 1.35848 0.84951 0.78840 0.77807 0.76356 1.19223 1.20317 1.18271 1.85109 1.21102 1.21800 1.67207 1.73709 0.89947 1.25304 1.18470 0.88569 0.87779 0.89855 0.78672 0.90521 0.87462 0.90648 0.86471 0.90459 0.91666 0.88717 0.90984 0.92771 0.74736 0.87406 0.87022 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.47 71.24 0.75 0.32 16 2 C 0.01 0.16 7.31 43.56 0.32 0.48 16 3 C -0.15 -2.06 10.92 22.68 0.25 -1.81 16 4 C -0.09 -1.43 6.82 24.38 0.17 -1.27 16 5 C 0.60 10.59 7.66 86.69 0.66 11.26 16 6 O -0.54 -13.35 16.56 -3.98 -0.07 -13.41 16 7 N -0.59 -7.30 2.87 -850.59 -2.44 -9.74 16 8 C 0.07 0.42 9.40 127.77 1.20 1.62 16 9 C 0.12 1.40 5.34 86.38 0.46 1.86 16 10 C -0.13 -1.72 5.65 30.60 0.17 -1.55 16 11 C 0.12 2.50 5.67 86.38 0.49 2.99 16 12 N -0.71 -17.37 5.56 -463.06 -2.57 -19.94 16 13 C 0.53 19.50 7.85 87.66 0.69 20.19 16 14 O -0.57 -26.16 15.86 -3.04 -0.05 -26.21 16 15 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 16 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 17 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 21 Si 1.00 43.60 29.55 68.60 2.03 45.62 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 25 O 0.12 1.76 8.24 65.82 0.54 2.31 16 26 N -0.37 -5.98 12.04 -48.86 -0.59 -6.57 16 27 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.11 0.24 8.04 -2.39 -0.02 0.22 16 33 H 0.07 0.55 5.95 -2.39 -0.01 0.54 16 34 H 0.12 0.80 8.07 -2.39 -0.02 0.78 16 35 H 0.08 1.21 7.50 -2.39 -0.02 1.19 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.42 7.29 8.47 -92.71 -0.79 6.51 16 41 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 42 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -83.98 387.67 2.93 -81.05 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.25 Total: 12.43 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 6.71 Total: -0.06 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -5.32 Total: -92.09 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: 0.43 Total: -37.32 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -83.98 2.93 -81.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283495335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.662 kcal (2) G-P(sol) polarization free energy of solvation -83.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds