Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35312 * 126.66545 * 2 1 4 4 C 1.42269 * 103.92052 * 179.97438 * 3 2 1 5 5 C 1.48336 * 126.93845 * 179.97438 * 4 3 2 6 6 O 1.21498 * 119.99803 * 353.35486 * 5 4 3 7 7 N 1.34771 * 120.00162 * 173.63636 * 5 4 3 8 8 C 1.46496 * 120.00028 * 3.45122 * 7 5 4 9 9 C 1.46497 * 120.00041 * 183.44781 * 7 5 4 10 10 C 1.53006 * 109.47056 * 90.00268 * 9 7 5 11 11 C 1.53003 * 109.46935 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46486 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99593 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00259 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99892 * 179.97438 * 13 12 11 16 16 S 1.80997 * 109.47117 * 180.02562 * 15 13 12 17 17 C 1.76203 * 100.00146 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99733 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99951 * 179.97438 * 17 16 15 20 20 N 1.31631 * 120.00385 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99922 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46989 * 60.00099 * 21 19 17 23 23 H 1.48497 * 109.47420 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47184 * 300.00467 * 21 19 17 25 25 N 1.30979 * 106.12381 * 0.22198 * 4 3 2 26 26 O 1.20899 * 111.44008 * 359.59914 * 25 4 3 27 27 H 1.09001 * 109.46748 * 90.00524 * 1 2 3 28 28 H 1.09002 * 109.47409 * 210.00692 * 1 2 3 29 29 H 1.09000 * 109.47462 * 330.00704 * 1 2 3 30 30 H 1.08005 * 128.04183 * 359.96807 * 3 2 1 31 31 H 1.09001 * 109.47306 * 84.06801 * 8 7 5 32 32 H 1.08997 * 109.47447 * 204.07138 * 8 7 5 33 33 H 1.08998 * 109.47315 * 324.06961 * 8 7 5 34 34 H 1.09000 * 109.47356 * 210.00262 * 9 7 5 35 35 H 1.09007 * 109.47221 * 330.00231 * 9 7 5 36 36 H 1.09002 * 109.46480 * 299.99677 * 10 9 7 37 37 H 1.08993 * 109.46867 * 59.99905 * 10 9 7 38 38 H 1.08994 * 109.46741 * 299.99068 * 11 10 9 39 39 H 1.08997 * 109.47400 * 59.99668 * 11 10 9 40 40 H 0.96996 * 120.00281 * 359.97438 * 12 11 10 41 41 H 1.09005 * 109.47204 * 299.99750 * 15 13 12 42 42 H 1.08997 * 109.47271 * 60.00008 * 15 13 12 43 43 H 0.96999 * 120.00283 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5353 0.0006 5 6 4.9076 1.2841 0.0003 6 8 4.9044 2.4929 -0.1222 7 7 6.0748 0.6230 0.1304 8 6 6.0844 -0.8404 0.1960 9 6 7.3340 1.3679 0.2061 10 6 7.6485 1.6908 1.6682 11 6 8.9633 2.4693 1.7472 12 7 9.2640 2.7789 3.1472 13 6 10.3817 3.4636 3.4608 14 8 11.1388 3.8230 2.5841 15 6 10.6908 3.7826 4.9008 16 16 12.2462 4.7034 4.9944 17 6 12.3599 4.9360 6.7373 18 1 11.5890 4.5462 7.3854 19 6 13.4401 5.6201 7.2771 20 7 14.3800 6.0948 6.4872 21 14 13.5602 5.8672 9.1248 22 1 13.5995 4.5449 9.7996 23 1 14.7986 6.6221 9.4439 24 1 12.3784 6.6305 9.6000 25 7 3.4761 -0.7657 -0.0040 26 8 2.3073 -1.0750 0.0007 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 2.0302 2.1272 -0.0005 31 1 6.0688 -1.2495 -0.8142 32 1 6.9855 -1.1752 0.7097 33 1 5.2060 -1.1855 0.7412 34 1 8.1388 0.7647 -0.2140 35 1 7.2421 2.2954 -0.3592 36 1 6.8436 2.2941 2.0882 37 1 7.7404 0.7634 2.2334 38 1 9.7682 1.8663 1.3271 39 1 8.8709 3.3967 1.1820 40 1 8.6587 2.4912 3.8484 41 1 9.8858 4.3863 5.3201 42 1 10.7824 2.8556 5.4668 43 1 15.1348 6.5732 6.8645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283495520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -31.796946 kcal Electronic energy + Delta-G solvation = -25533.451071 eV Core-core repulsion = 21514.770764 eV Total energy + Delta-G solvation = -4018.680307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.15828 -41.11965 -40.58425 -37.52862 -36.20810 -35.22018 -34.59031 -34.39758 -32.95489 -30.73171 -28.77625 -28.01125 -27.72181 -27.28246 -24.85398 -23.62736 -22.73727 -21.79328 -20.29545 -19.83025 -18.95077 -18.48017 -18.02848 -17.81777 -17.64156 -16.88876 -16.87892 -16.78217 -16.49007 -15.85385 -15.71679 -15.19414 -14.80274 -14.65479 -14.48480 -14.41566 -14.25397 -14.00099 -13.94867 -13.72966 -13.45951 -13.23605 -13.17736 -12.95088 -12.86426 -12.75028 -12.61839 -12.20146 -11.92014 -11.75563 -11.60738 -11.50054 -11.13346 -11.02502 -10.40405 -10.29339 -10.15598 -9.94809 -8.67771 -8.34851 -6.13540 -0.02484 0.63128 1.25406 1.43791 1.45027 1.53388 1.58751 1.60162 1.90760 2.02925 2.26254 2.30553 2.74161 2.99130 3.31123 3.39081 3.81024 3.83161 3.90199 3.92321 4.02406 4.10663 4.25316 4.26877 4.28994 4.38472 4.49225 4.50478 4.56019 4.72640 4.76638 4.80178 4.83229 4.92485 4.97340 5.05191 5.24473 5.31780 5.39988 5.41097 6.00670 6.19123 6.46816 6.70605 6.98940 7.06088 7.21205 8.74174 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024427 B = 0.001516 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.979908 B =18465.295536 C =19013.815545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.008 4.008 3 C -0.208 4.208 4 C -0.044 4.044 5 C 0.588 3.412 6 O -0.558 6.558 7 N -0.596 5.596 8 C 0.069 3.931 9 C 0.116 3.884 10 C -0.129 4.129 11 C 0.125 3.875 12 N -0.714 5.714 13 C 0.533 3.467 14 O -0.565 6.565 15 C -0.130 4.130 16 S -0.152 6.152 17 C -0.549 4.549 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.263 1.263 25 N -0.336 5.336 26 O 0.116 5.884 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.187 0.813 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.989 -19.574 -12.933 39.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.231 4.231 4 C -0.202 4.202 5 C 0.375 3.625 6 O -0.435 6.435 7 N -0.328 5.328 8 C -0.073 4.073 9 C -0.006 4.006 10 C -0.167 4.167 11 C 0.001 3.999 12 N -0.368 5.368 13 C 0.319 3.681 14 O -0.444 6.444 15 C -0.281 4.281 16 S 0.075 5.925 17 C -0.697 4.697 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.187 1.187 25 N -0.039 5.039 26 O 0.042 5.958 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.204 0.796 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.253 0.747 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.659 -19.276 -14.507 38.233 hybrid contribution -0.799 0.738 2.082 2.349 sum -30.458 -18.539 -12.425 37.759 Atomic orbital electron populations 1.20679 0.80077 1.06569 1.05945 1.25173 0.97953 0.83953 1.00021 1.22670 0.89269 1.02684 1.08427 1.23444 0.96784 0.90811 1.09127 1.17309 0.82605 0.85912 0.76723 1.90800 1.86957 1.14464 1.51264 1.47802 1.05591 1.08919 1.70440 1.22299 1.05055 0.76587 1.03322 1.21529 0.84710 0.98058 0.96349 1.21979 0.95642 1.01237 0.97888 1.21234 0.97195 0.99599 0.81882 1.45733 1.23857 1.57294 1.09914 1.20078 0.81012 0.77104 0.89951 1.90692 1.49595 1.53365 1.50722 1.23375 1.03102 1.05165 0.96471 1.85575 1.24864 1.71238 1.10774 1.23184 1.12038 1.42589 0.91872 0.89884 1.26134 0.94029 0.94056 1.04863 1.70178 1.11055 1.35694 1.37813 0.84995 0.78033 0.78917 0.75986 1.18596 1.20333 1.18725 1.74318 0.97719 1.14867 1.17002 1.84762 1.11203 1.34296 1.65542 0.87403 0.87908 0.87183 0.79595 0.91576 0.88228 0.89712 0.86850 0.90571 0.91840 0.88884 0.90974 0.92714 0.74744 0.87354 0.87004 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.05 10.45 71.24 0.74 0.79 16 2 C -0.01 -0.07 7.47 25.01 0.19 0.12 16 3 C -0.21 -2.89 10.93 22.60 0.25 -2.64 16 4 C -0.04 -0.82 6.86 42.96 0.29 -0.53 16 5 C 0.59 13.08 7.70 86.93 0.67 13.74 16 6 O -0.56 -16.11 16.52 -3.71 -0.06 -16.17 16 7 N -0.60 -10.11 2.87 -849.64 -2.44 -12.55 16 8 C 0.07 0.80 9.64 127.77 1.23 2.03 16 9 C 0.12 1.83 5.41 86.38 0.47 2.29 16 10 C -0.13 -2.06 5.65 30.60 0.17 -1.88 16 11 C 0.13 2.78 5.67 86.38 0.49 3.27 16 12 N -0.71 -18.41 5.56 -463.06 -2.57 -20.98 16 13 C 0.53 20.08 7.85 87.66 0.69 20.77 16 14 O -0.57 -26.74 15.86 -3.03 -0.05 -26.79 16 15 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 16 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 17 C -0.55 -31.69 9.50 67.95 0.65 -31.04 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 21 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 N -0.34 -5.41 8.71 -49.53 -0.43 -5.84 16 26 O 0.12 1.45 11.18 71.91 0.80 2.26 16 27 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.71 8.03 -2.39 -0.02 0.70 16 33 H 0.08 1.11 5.40 -2.39 -0.01 1.10 16 34 H 0.11 1.22 8.07 -2.39 -0.02 1.21 16 35 H 0.08 1.50 7.37 -2.38 -0.02 1.49 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.42 7.88 8.47 -92.71 -0.79 7.09 16 41 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 42 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -85.71 387.08 3.40 -82.31 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.25 Total: 14.35 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 6.74 Total: 3.41 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -5.16 Total: -95.53 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: 0.69 Total: -40.70 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -85.71 3.40 -82.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283495520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.518 kcal (2) G-P(sol) polarization free energy of solvation -85.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds