Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00120 * 2 1 4 4 H 1.48500 * 109.46743 * 239.99887 * 3 2 1 5 5 H 1.48503 * 109.46883 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47403 * 119.99533 * 3 2 1 7 7 C 1.38809 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00316 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00231 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46756 * 34.99880 * 10 9 7 12 12 C 1.53001 * 109.46765 * 275.00152 * 10 9 7 13 13 O 1.42901 * 109.47064 * 294.99675 * 12 10 9 14 14 C 1.52996 * 109.47394 * 154.99989 * 10 9 7 15 15 N 1.46499 * 109.46959 * 304.99961 * 14 10 9 16 16 C 1.34777 * 120.00065 * 179.97438 * 15 14 10 17 17 O 1.21283 * 120.00118 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.47208 * 180.02562 * 18 16 15 20 20 N 1.46499 * 109.47198 * 180.02562 * 19 18 16 21 21 C 1.34777 * 119.99665 * 180.27868 * 20 19 18 22 22 O 1.21703 * 120.00193 * 359.72118 * 21 20 19 23 23 C 1.46586 * 119.99782 * 179.72446 * 21 20 19 24 24 C 1.36647 * 125.45923 * 179.97438 * 23 21 20 25 25 C 1.37473 * 113.29745 * 180.02562 * 24 23 21 26 26 C 1.33816 * 115.10124 * 0.02562 * 25 24 23 27 27 S 1.70620 * 110.95482 * 359.72085 * 26 25 24 28 28 H 0.96999 * 119.99727 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00160 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47221 * 54.99935 * 12 10 9 31 31 H 1.08999 * 109.47014 * 174.99817 * 12 10 9 32 32 H 0.96701 * 113.99824 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.47190 * 185.00226 * 14 10 9 34 34 H 1.08998 * 109.47408 * 64.99915 * 14 10 9 35 35 H 0.97000 * 120.00386 * 0.02562 * 15 14 10 36 36 H 1.08995 * 109.47322 * 60.00554 * 18 16 15 37 37 H 1.09006 * 109.46960 * 300.00111 * 18 16 15 38 38 H 1.09009 * 109.46730 * 59.99906 * 19 18 16 39 39 H 1.08998 * 109.46846 * 300.00451 * 19 18 16 40 40 H 0.97001 * 119.99790 * 359.97438 * 20 19 18 41 41 H 1.08000 * 123.34725 * 359.97438 * 24 23 21 42 42 H 1.07994 * 122.44962 * 180.02562 * 25 24 23 43 43 H 1.07996 * 124.52401 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9688 -3.5505 0.5900 12 6 2.4219 -4.0356 -1.4365 13 8 1.2276 -4.2885 -2.1794 14 6 1.1809 -4.7522 0.6101 15 7 0.7343 -4.3355 1.9417 16 6 -0.0555 -5.1472 2.6723 17 8 -0.3962 -6.2229 2.2275 18 6 -0.5144 -4.7189 4.0423 19 6 -1.3918 -5.8142 4.6519 20 7 -1.8384 -5.3975 5.9835 21 6 -2.6232 -6.2119 6.7165 22 8 -2.9651 -7.2912 6.2700 23 6 -3.0652 -5.7975 8.0513 24 6 -3.8593 -6.5314 8.8867 25 6 -4.1204 -5.9021 10.0807 26 6 -3.5611 -4.6944 10.2201 27 16 -2.6535 -4.2790 8.8363 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.9715 -3.2164 -1.9001 31 1 3.0424 -4.9317 -1.4300 32 1 1.3828 -4.5351 -3.1014 33 1 1.7558 -5.6745 0.6919 34 1 0.3133 -4.9201 -0.0280 35 1 1.0064 -3.4750 2.2974 36 1 -1.0888 -3.7961 3.9611 37 1 0.3534 -4.5518 4.6804 38 1 -0.8170 -6.7368 4.7332 39 1 -2.2595 -5.9817 4.0139 40 1 -1.5655 -4.5374 6.3394 41 1 -4.2441 -7.5083 8.6338 42 1 -4.7323 -6.3495 10.8499 43 1 -3.6658 -4.0686 11.0939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283826911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = -80.047701 kcal Electronic energy + Delta-G solvation = -26065.619452 eV Core-core repulsion = 22044.846835 eV Total energy + Delta-G solvation = -4020.772616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04757 -39.35259 -37.82359 -37.16460 -35.33602 -34.86281 -33.50383 -31.76295 -31.17911 -29.82417 -28.31854 -26.02170 -25.04801 -23.77525 -23.20512 -21.50671 -20.23588 -20.03817 -19.53615 -18.80505 -17.62370 -16.95183 -16.61724 -16.32731 -16.07972 -15.86269 -15.71582 -15.08732 -15.03651 -14.63203 -14.07096 -13.93146 -13.79428 -13.40488 -13.38524 -13.14407 -13.08418 -12.84726 -12.76587 -12.60937 -12.05013 -11.95619 -11.55767 -11.38878 -11.36734 -10.91716 -10.87592 -10.60625 -10.34136 -10.16991 -9.83354 -9.62296 -9.42648 -9.37857 -9.16187 -9.01924 -8.98036 -8.61013 -7.08363 -5.85790 -3.16335 0.15001 1.08794 1.49015 2.05311 2.77309 2.90825 2.97438 3.35436 3.40879 3.42232 3.65698 4.45280 4.48559 4.59634 4.74434 4.90567 4.92567 4.99988 5.07614 5.10104 5.37117 5.44244 5.48967 5.54234 5.56868 5.76678 5.79893 5.87685 5.90782 5.94774 5.99971 6.02623 6.15158 6.34179 6.48412 6.71915 6.88027 7.17975 7.57612 7.90156 7.91697 8.18572 8.31243 8.54387 9.43419 9.98596 10.35274 11.35601 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.002126 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.439626 B =13169.110375 C =15077.879300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.065 0.935 12 C 0.059 3.941 13 O -0.560 6.560 14 C 0.118 3.882 15 N -0.711 5.711 16 C 0.515 3.485 17 O -0.551 6.551 18 C -0.156 4.156 19 C 0.137 3.863 20 N -0.727 5.727 21 C 0.590 3.410 22 O -0.525 6.525 23 C -0.265 4.265 24 C -0.057 4.057 25 C -0.150 4.150 26 C -0.230 4.230 27 S 0.203 5.797 28 H 0.257 0.743 29 H 0.389 0.611 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.364 0.636 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.410 0.590 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.398 0.602 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 -8.813 18.087 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.380 4.380 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.006 4.006 15 N -0.362 5.362 16 C 0.300 3.700 17 O -0.429 6.429 18 C -0.197 4.197 19 C 0.014 3.986 20 N -0.378 5.378 21 C 0.375 3.625 22 O -0.403 6.403 23 C -0.386 4.386 24 C -0.090 4.090 25 C -0.181 4.181 26 C -0.368 4.368 27 S 0.470 5.530 28 H 0.066 0.934 29 H 0.223 0.777 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.209 0.791 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.232 0.768 41 H 0.172 0.828 42 H 0.164 0.836 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.240 -8.763 17.604 19.792 hybrid contribution -0.098 0.650 0.210 0.690 sum -2.338 -8.113 17.814 19.713 Atomic orbital electron populations 1.69666 1.05078 1.25875 1.56683 1.24748 0.95459 0.97649 1.02591 0.86298 0.78531 0.83634 0.77809 1.21342 1.21709 1.21247 1.19167 0.90876 0.84061 1.43880 0.91263 1.42368 1.06042 0.99017 1.88031 1.20598 0.95033 0.87037 0.91921 0.91672 1.23030 0.86517 0.97260 0.95412 1.86569 1.32151 1.91888 1.25749 1.21549 0.99550 0.96832 0.82678 1.45971 1.50489 1.21738 1.18021 1.20148 0.78649 0.84629 0.86566 1.90712 1.56875 1.22749 1.72610 1.21809 1.01668 1.00770 0.95405 1.21096 0.98980 0.97066 0.81482 1.45875 1.52059 1.21287 1.18607 1.16907 0.78323 0.84227 0.83013 1.90863 1.56300 1.21809 1.71283 1.24690 1.11701 1.01456 1.00740 1.20835 0.95477 1.00742 0.91957 1.20070 1.03938 0.95228 0.98903 1.25350 1.05052 1.01930 1.04485 1.83082 1.46491 1.16205 1.07217 0.93355 0.77672 0.93343 0.95531 0.79125 0.92113 0.90556 0.75377 0.87804 0.88282 0.90196 0.90054 0.76811 0.82809 0.83647 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.71 -16.41 4.51 -53.42 -0.24 -16.65 16 10 C 0.17 3.03 2.84 -67.93 -0.19 2.84 16 11 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 12 C 0.06 1.00 6.86 37.16 0.25 1.26 16 13 O -0.56 -9.90 12.64 -35.23 -0.45 -10.35 16 14 C 0.12 2.04 5.12 -4.04 -0.02 2.02 16 15 N -0.71 -11.32 5.39 -60.30 -0.32 -11.65 16 16 C 0.52 8.03 7.83 -10.98 -0.09 7.94 16 17 O -0.55 -10.53 15.98 5.55 0.09 -10.45 16 18 C -0.16 -1.75 5.81 -27.88 -0.16 -1.91 16 19 C 0.14 1.70 4.96 -4.04 -0.02 1.68 16 20 N -0.73 -7.74 5.55 -61.64 -0.34 -8.08 16 21 C 0.59 7.47 7.78 -12.89 -0.10 7.36 16 22 O -0.52 -8.65 16.84 5.19 0.09 -8.56 16 23 C -0.27 -2.67 6.45 -36.79 -0.24 -2.91 16 24 C -0.06 -0.52 10.01 -40.44 -0.40 -0.92 16 25 C -0.15 -1.04 10.15 -41.41 -0.42 -1.46 16 26 C -0.23 -1.44 10.92 29.18 0.32 -1.13 16 27 S 0.20 1.42 22.16 -107.50 -2.38 -0.96 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.39 9.99 7.80 -40.82 -0.32 9.67 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.36 4.63 9.12 45.56 0.42 5.05 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.51 7.39 -51.93 -0.38 1.12 16 35 H 0.41 6.41 8.14 -40.82 -0.33 6.08 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.09 8.10 -51.92 -0.42 0.67 16 39 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.40 3.15 7.59 -40.82 -0.31 2.84 16 41 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 43 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -34.54 386.50 -8.47 -43.01 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -5.12 Total: 19.61 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.32 Total: 7.98 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.18 Total: -62.24 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.27 Total: -29.35 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.38 Total: -0.96 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.54 -8.47 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283826911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.039 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds