Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47340 * 269.99542 * 3 2 1 5 5 H 1.48499 * 109.47464 * 30.00066 * 3 2 1 6 6 H 1.48501 * 109.47081 * 149.99918 * 3 2 1 7 7 C 1.38797 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00193 * 0.02562 * 7 2 1 9 9 S 1.76207 * 119.99647 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99919 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47248 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99658 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00122 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00272 * 180.27584 * 13 11 10 15 15 H 1.09006 * 110.64002 * 36.41807 * 14 13 11 16 16 C 1.55158 * 110.72426 * 273.27715 * 14 13 11 17 17 C 1.54903 * 101.58348 * 206.13132 * 16 14 13 18 18 N 1.47427 * 104.83430 * 37.00674 * 17 16 14 19 19 C 1.34773 * 125.65035 * 155.83658 * 18 17 16 20 20 O 1.21276 * 119.99995 * 172.50753 * 19 18 17 21 21 C 1.50706 * 119.99846 * 352.50025 * 19 18 17 22 22 C 1.50696 * 115.55019 * 292.93397 * 21 19 18 23 23 N 1.34787 * 119.99976 * 302.70645 * 22 21 19 24 24 O 1.21275 * 120.00114 * 122.71237 * 22 21 19 25 25 C 1.52995 * 117.49536 * 147.26197 * 21 19 18 26 26 C 1.52998 * 117.49746 * 78.60258 * 21 19 18 27 27 C 1.47025 * 108.69927 * 335.87416 * 18 17 16 28 28 H 0.97003 * 119.99716 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47156 * 60.00167 * 10 9 7 30 30 H 1.08999 * 109.47569 * 300.00582 * 10 9 7 31 31 H 0.97004 * 120.00392 * 0.02562 * 13 11 10 32 32 H 1.08992 * 111.00166 * 324.20799 * 16 14 13 33 33 H 1.09004 * 111.00288 * 88.05629 * 16 14 13 34 34 H 1.08996 * 110.36780 * 155.84626 * 17 16 14 35 35 H 1.09005 * 110.36796 * 278.16835 * 17 16 14 36 36 H 0.97000 * 119.99499 * 355.00086 * 23 22 21 37 37 H 0.96999 * 119.99642 * 175.00517 * 23 22 21 38 38 H 1.08997 * 117.50502 * 0.02562 * 25 21 19 39 39 H 1.09000 * 117.49783 * 145.02225 * 25 21 19 40 40 H 1.08996 * 117.49982 * 214.97555 * 26 21 19 41 41 H 1.08998 * 117.49957 * 359.97438 * 26 21 19 42 42 H 1.09003 * 109.88040 * 241.63833 * 27 18 17 43 43 H 1.09000 * 109.88394 * 120.47633 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0025 11 6 5.5729 -3.2327 0.0026 12 8 6.3439 -2.2965 0.0024 13 7 6.0455 -4.4949 0.0041 14 6 7.4904 -4.7361 0.0103 15 1 8.0019 -3.9900 0.6185 16 6 8.0520 -4.7439 -1.4361 17 6 9.3051 -5.6408 -1.2784 18 7 8.9056 -6.6811 -0.3131 19 6 9.4581 -7.9056 -0.2044 20 8 9.1439 -8.6333 0.7135 21 6 10.4663 -8.3705 -1.2235 22 6 9.9306 -8.5885 -2.6151 23 7 8.9126 -9.4482 -2.8183 24 8 10.4156 -7.9906 -3.5521 25 6 11.5801 -9.3020 -0.7412 26 6 11.8975 -7.8461 -1.0915 27 6 7.8039 -6.1619 0.5105 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4323 -0.8874 30 1 3.6431 -3.4312 0.8926 31 1 5.4289 -5.2437 0.0047 32 1 7.3383 -5.1882 -2.1298 33 1 8.3287 -3.7384 -1.7532 34 1 9.5712 -6.0922 -2.2341 35 1 10.1403 -5.0603 -0.8864 36 1 8.5728 -9.9802 -2.0819 37 1 8.5199 -9.5347 -3.7011 38 1 11.5835 -9.5789 0.3130 39 1 11.9257 -10.0723 -1.4306 40 1 12.4518 -7.6592 -2.0112 41 1 12.1098 -7.1645 -0.2679 42 1 8.1070 -6.1293 1.5570 43 1 6.9249 -6.7963 0.3966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283838315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = -76.734356 kcal Electronic energy + Delta-G solvation = -26864.973902 eV Core-core repulsion = 22844.344963 eV Total energy + Delta-G solvation = -4020.628939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34956 -39.98789 -39.17575 -37.80616 -36.37895 -34.32650 -34.16154 -32.46976 -31.32052 -29.79665 -28.53797 -26.07049 -25.62722 -23.92632 -23.09219 -22.06262 -21.36025 -20.63782 -19.57070 -18.44231 -17.93882 -17.63204 -17.12233 -16.59480 -16.33613 -16.16875 -15.65199 -15.12919 -15.06132 -14.96301 -14.84012 -14.53631 -13.98644 -13.80750 -13.72848 -13.45282 -13.12969 -12.83672 -12.82094 -12.50693 -12.22112 -12.13483 -11.80931 -11.68233 -11.31220 -11.29271 -11.20161 -11.03607 -10.72874 -10.65093 -10.26322 -10.22511 -9.89420 -9.64801 -9.23906 -9.10203 -9.02669 -8.54856 -6.95996 -6.31881 -4.04209 1.78254 1.99449 2.20637 2.71557 2.76587 2.83700 3.19134 3.26345 3.31172 3.47664 3.58967 3.76430 4.13066 4.13393 4.17201 4.27280 4.30119 4.30689 4.66605 4.74112 4.78964 4.86671 4.95468 5.06381 5.07170 5.16878 5.20405 5.24918 5.35152 5.47418 5.50431 5.61895 5.69733 5.75928 5.82894 5.95523 6.18611 6.38046 6.70229 6.89984 7.44675 7.54702 7.63613 7.91087 8.35714 8.38692 9.14088 10.77290 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.001981 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.989783 B =14131.755847 C =14143.546108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.515 6.515 13 N -0.729 5.729 14 C 0.139 3.861 15 H 0.107 0.893 16 C -0.145 4.145 17 C 0.095 3.905 18 N -0.608 5.608 19 C 0.572 3.428 20 O -0.526 6.526 21 C -0.201 4.201 22 C 0.565 3.435 23 N -0.845 5.845 24 O -0.528 6.528 25 C -0.125 4.125 26 C -0.127 4.127 27 C 0.104 3.896 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.401 0.599 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.406 0.594 37 H 0.407 0.593 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.273 -21.202 -2.832 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.384 5.384 14 C 0.032 3.968 15 H 0.125 0.875 16 C -0.184 4.184 17 C -0.028 4.028 18 N -0.342 5.342 19 C 0.359 3.641 20 O -0.402 6.402 21 C -0.207 4.207 22 C 0.348 3.652 23 N -0.409 5.409 24 O -0.404 6.404 25 C -0.162 4.162 26 C -0.165 4.165 27 C -0.019 4.019 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.236 0.764 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.235 0.765 37 H 0.239 0.761 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.100 0.900 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 23.660 -19.512 -2.802 30.795 hybrid contribution -1.651 -0.982 -0.103 1.924 sum 22.009 -20.494 -2.905 30.214 Atomic orbital electron populations 1.69939 1.05915 1.27799 1.47941 1.24722 0.94470 0.98998 0.93171 0.86728 0.81876 0.83263 0.79935 1.19202 1.19925 1.15923 1.22306 0.88205 0.97547 1.58909 0.89365 1.84795 1.09379 0.99801 1.97439 1.23281 0.93706 1.04600 1.05935 1.20310 0.90691 0.82057 0.74852 1.90708 1.58713 1.42082 1.47365 1.45922 1.06208 1.08447 1.77775 1.21839 0.82540 0.95610 0.96784 0.87473 1.23253 0.96574 1.01199 0.97383 1.22534 0.97954 0.88944 0.93341 1.48295 1.35779 1.13575 1.36586 1.18671 0.80661 0.80037 0.84745 1.90750 1.61792 1.54378 1.33266 1.21428 0.92694 1.12052 0.94557 1.18976 0.79448 0.78658 0.88134 1.43773 1.37040 1.44043 1.16030 1.90786 1.58335 1.48258 1.42989 1.23122 0.95483 0.93911 1.03715 1.23141 0.91323 0.97269 1.04747 1.22131 0.90129 0.94012 0.95667 0.91912 0.88416 0.88320 0.76398 0.90034 0.88557 0.89491 0.90324 0.76504 0.76121 0.86590 0.87226 0.86385 0.87217 0.89968 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.26 13.97 55.49 0.78 -25.49 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.49 27.74 -169.99 -4.72 16.78 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 10 C -0.12 -2.27 6.16 36.01 0.22 -2.05 16 11 C 0.53 8.69 7.85 -10.99 -0.09 8.60 16 12 O -0.51 -10.24 15.58 5.55 0.09 -10.16 16 13 N -0.73 -8.16 5.20 -52.03 -0.27 -8.43 16 14 C 0.14 1.36 3.24 -66.10 -0.21 1.15 16 15 H 0.11 1.19 7.69 -51.93 -0.40 0.79 16 16 C -0.14 -1.32 6.77 -24.59 -0.17 -1.49 16 17 C 0.10 0.76 6.74 -2.53 -0.02 0.74 16 18 N -0.61 -5.29 3.33 -170.52 -0.57 -5.86 16 19 C 0.57 5.37 7.05 -10.98 -0.08 5.30 16 20 O -0.53 -6.36 17.08 5.56 0.09 -6.26 16 21 C -0.20 -1.50 1.48 -156.81 -0.23 -1.73 16 22 C 0.56 4.64 6.40 -10.98 -0.07 4.57 16 23 N -0.85 -4.61 8.85 31.22 0.28 -4.34 16 24 O -0.53 -5.94 16.67 5.56 0.09 -5.85 16 25 C -0.12 -0.70 9.76 -26.70 -0.26 -0.96 16 26 C -0.13 -0.76 9.75 -26.69 -0.26 -1.02 16 27 C 0.10 0.89 6.62 -3.07 -0.02 0.87 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.10 1.66 8.14 -51.91 -0.42 1.23 16 30 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.40 3.44 8.31 -40.82 -0.34 3.10 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.75 6.01 -51.93 -0.31 0.44 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.41 1.69 8.83 -40.82 -0.36 1.33 16 37 H 0.41 1.72 8.93 -40.82 -0.36 1.35 16 38 H 0.12 0.66 8.02 -51.93 -0.42 0.24 16 39 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.12 0.70 7.86 -51.93 -0.41 0.29 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.62 7.69 -51.93 -0.40 0.22 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -36.54 380.08 -7.42 -43.96 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.96 Total: 3.19 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -0.97 Total: 2.16 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.21 Total: -44.10 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.27 Total: -22.27 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.72 Total: 16.78 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.54 -7.42 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283838315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.776 kcal (2) G-P(sol) polarization free energy of solvation -36.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds