Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47340 * 269.99542 * 3 2 1 5 5 H 1.48499 * 109.47464 * 30.00066 * 3 2 1 6 6 H 1.48501 * 109.47081 * 149.99918 * 3 2 1 7 7 C 1.38797 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00193 * 0.02562 * 7 2 1 9 9 S 1.76207 * 119.99647 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99919 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47248 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99658 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00122 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00272 * 180.27584 * 13 11 10 15 15 H 1.09006 * 110.64002 * 36.41807 * 14 13 11 16 16 C 1.55158 * 110.72426 * 273.27715 * 14 13 11 17 17 C 1.54903 * 101.58348 * 206.13132 * 16 14 13 18 18 N 1.47427 * 104.83430 * 37.00674 * 17 16 14 19 19 C 1.34773 * 125.65035 * 155.83658 * 18 17 16 20 20 O 1.21276 * 119.99995 * 172.50753 * 19 18 17 21 21 C 1.50706 * 119.99846 * 352.50025 * 19 18 17 22 22 C 1.50696 * 115.55019 * 292.93397 * 21 19 18 23 23 N 1.34787 * 119.99976 * 302.70645 * 22 21 19 24 24 O 1.21275 * 120.00114 * 122.71237 * 22 21 19 25 25 C 1.52995 * 117.49536 * 147.26197 * 21 19 18 26 26 C 1.52998 * 117.49746 * 78.60258 * 21 19 18 27 27 C 1.47025 * 108.69927 * 335.87416 * 18 17 16 28 28 H 0.97003 * 119.99716 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47156 * 60.00167 * 10 9 7 30 30 H 1.08999 * 109.47569 * 300.00582 * 10 9 7 31 31 H 0.97004 * 120.00392 * 0.02562 * 13 11 10 32 32 H 1.08992 * 111.00166 * 324.20799 * 16 14 13 33 33 H 1.09004 * 111.00288 * 88.05629 * 16 14 13 34 34 H 1.08996 * 110.36780 * 155.84626 * 17 16 14 35 35 H 1.09005 * 110.36796 * 278.16835 * 17 16 14 36 36 H 0.97000 * 119.99499 * 355.00086 * 23 22 21 37 37 H 0.96999 * 119.99642 * 175.00517 * 23 22 21 38 38 H 1.08997 * 117.50502 * 0.02562 * 25 21 19 39 39 H 1.09000 * 117.49783 * 145.02225 * 25 21 19 40 40 H 1.08996 * 117.49982 * 214.97555 * 26 21 19 41 41 H 1.08998 * 117.49957 * 359.97438 * 26 21 19 42 42 H 1.09003 * 109.88040 * 241.63833 * 27 18 17 43 43 H 1.09000 * 109.88394 * 120.47633 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0025 11 6 5.5729 -3.2327 0.0026 12 8 6.3439 -2.2965 0.0024 13 7 6.0455 -4.4949 0.0041 14 6 7.4904 -4.7361 0.0103 15 1 8.0019 -3.9900 0.6185 16 6 8.0520 -4.7439 -1.4361 17 6 9.3051 -5.6408 -1.2784 18 7 8.9056 -6.6811 -0.3131 19 6 9.4581 -7.9056 -0.2044 20 8 9.1439 -8.6333 0.7135 21 6 10.4663 -8.3705 -1.2235 22 6 9.9306 -8.5885 -2.6151 23 7 8.9126 -9.4482 -2.8183 24 8 10.4156 -7.9906 -3.5521 25 6 11.5801 -9.3020 -0.7412 26 6 11.8975 -7.8461 -1.0915 27 6 7.8039 -6.1619 0.5105 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4323 -0.8874 30 1 3.6431 -3.4312 0.8926 31 1 5.4289 -5.2437 0.0047 32 1 7.3383 -5.1882 -2.1298 33 1 8.3287 -3.7384 -1.7532 34 1 9.5712 -6.0922 -2.2341 35 1 10.1403 -5.0603 -0.8864 36 1 8.5728 -9.9802 -2.0819 37 1 8.5199 -9.5347 -3.7011 38 1 11.5835 -9.5789 0.3130 39 1 11.9257 -10.0723 -1.4306 40 1 12.4518 -7.6592 -2.0112 41 1 12.1098 -7.1645 -0.2679 42 1 8.1070 -6.1293 1.5570 43 1 6.9249 -6.7963 0.3966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283838315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -106.214053 kcal Electronic energy + Delta-G solvation = -26866.252238 eV Core-core repulsion = 22844.344963 eV Total energy + Delta-G solvation = -4021.907275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.02707 -40.95683 -40.07486 -38.69051 -36.97303 -35.38869 -34.72303 -34.66516 -32.31868 -30.81435 -29.54574 -27.85174 -26.69725 -24.63887 -23.54980 -22.85729 -22.15953 -21.74710 -20.20143 -19.90528 -19.06930 -18.20184 -18.17307 -17.54592 -17.24859 -17.11862 -16.98501 -16.48087 -16.35256 -15.90947 -15.54211 -15.42128 -15.20197 -14.95175 -14.76753 -14.63299 -14.41406 -13.90068 -13.70522 -13.54280 -13.33850 -13.08130 -13.00906 -12.75395 -12.65998 -12.57334 -12.25528 -12.04615 -11.86505 -11.76886 -11.35066 -11.16631 -11.04838 -10.93423 -10.81176 -10.53007 -10.23372 -9.88351 -8.98520 -8.51093 -6.21613 0.97764 1.11645 1.32129 1.33857 1.43865 1.50758 1.53385 1.65465 2.22088 2.25653 2.27231 2.68002 2.71866 2.87271 3.09102 3.40982 3.55525 3.61892 3.67653 3.79610 3.82176 3.97010 4.07764 4.16135 4.24825 4.47435 4.49152 4.52574 4.62986 4.65033 4.70431 4.83426 4.87988 4.98345 5.06218 5.07940 5.37816 5.71107 5.72041 6.12235 6.17926 6.21174 6.39915 6.82697 6.94135 7.11286 7.14448 8.61194 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.001981 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.989783 B =14131.755847 C =14143.546108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.043 3.957 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.235 1.235 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.173 6.173 10 C -0.113 4.113 11 C 0.542 3.458 12 O -0.554 6.554 13 N -0.705 5.705 14 C 0.140 3.860 15 H 0.098 0.902 16 C -0.140 4.140 17 C 0.103 3.897 18 N -0.607 5.607 19 C 0.575 3.425 20 O -0.555 6.555 21 C -0.212 4.212 22 C 0.565 3.435 23 N -0.832 5.832 24 O -0.563 6.563 25 C -0.113 4.113 26 C -0.122 4.122 27 C 0.109 3.891 28 H 0.276 0.724 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.417 0.583 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.414 0.586 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.845 -22.302 -2.853 32.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.162 4.162 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.159 1.159 7 C -0.676 4.676 8 H 0.080 0.920 9 S 0.053 5.947 10 C -0.264 4.264 11 C 0.328 3.672 12 O -0.432 6.432 13 N -0.359 5.359 14 C 0.035 3.965 15 H 0.116 0.884 16 C -0.180 4.180 17 C -0.019 4.019 18 N -0.341 5.341 19 C 0.363 3.637 20 O -0.433 6.433 21 C -0.219 4.219 22 C 0.348 3.652 23 N -0.396 5.396 24 O -0.441 6.441 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.014 4.014 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.255 0.745 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.244 0.756 37 H 0.247 0.753 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 25.209 -20.680 -2.823 32.728 hybrid contribution -2.127 -0.835 -0.100 2.288 sum 23.082 -21.515 -2.922 31.689 Atomic orbital electron populations 1.70021 1.07334 1.28995 1.49182 1.25588 0.95293 1.02337 0.92964 0.85854 0.80708 0.79545 0.80191 1.18723 1.18530 1.15893 1.22468 0.90361 0.96641 1.58144 0.91950 1.84697 1.06284 1.06103 1.97588 1.23274 0.95831 0.99671 1.07580 1.19878 0.89348 0.83113 0.74887 1.90704 1.59130 1.43618 1.49701 1.45637 1.07408 1.07200 1.75628 1.21871 0.81097 0.96219 0.97349 0.88417 1.23180 0.97075 1.01046 0.96653 1.22496 0.97717 0.88529 0.93200 1.48328 1.35641 1.13635 1.36451 1.18900 0.80523 0.79704 0.84600 1.90737 1.62854 1.55117 1.34570 1.21375 0.92864 1.13889 0.93738 1.19082 0.79576 0.78540 0.87973 1.43708 1.36012 1.43091 1.16743 1.90772 1.59596 1.49788 1.43971 1.23220 0.93724 0.94077 1.04026 1.23216 0.89930 0.97782 1.05026 1.22059 0.90610 0.93120 0.95641 0.91415 0.86793 0.86716 0.74483 0.89942 0.89368 0.89753 0.89038 0.75586 0.75345 0.86543 0.85826 0.86330 0.86455 0.89818 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.36 13.97 21.65 0.30 -55.06 16 2 C 0.04 2.52 5.50 84.86 0.47 2.99 16 3 Si 0.92 44.38 27.74 68.60 1.90 46.28 16 4 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.24 -11.31 6.74 99.48 0.67 -10.64 16 7 C -0.53 -30.17 10.04 67.95 0.68 -29.48 16 8 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 9 S -0.17 -8.44 18.55 -56.49 -1.05 -9.49 16 10 C -0.11 -3.95 6.16 71.24 0.44 -3.51 16 11 C 0.54 16.72 7.85 87.66 0.69 17.41 16 12 O -0.55 -21.52 15.58 -3.05 -0.05 -21.56 16 13 N -0.70 -14.18 5.20 -436.93 -2.27 -16.45 16 14 C 0.14 2.49 3.24 46.18 0.15 2.64 16 15 H 0.10 2.03 7.69 -2.38 -0.02 2.01 16 16 C -0.14 -2.33 6.77 31.98 0.22 -2.11 16 17 C 0.10 1.46 6.74 86.85 0.59 2.05 16 18 N -0.61 -9.39 3.33 -811.80 -2.70 -12.09 16 19 C 0.57 9.79 7.05 87.66 0.62 10.41 16 20 O -0.55 -12.53 17.08 -3.02 -0.05 -12.58 16 21 C -0.21 -2.82 1.48 -53.68 -0.08 -2.90 16 22 C 0.56 8.45 6.40 87.65 0.56 9.01 16 23 N -0.83 -7.73 8.85 -173.53 -1.54 -9.27 16 24 O -0.56 -12.09 16.67 -3.01 -0.05 -12.14 16 25 C -0.11 -1.05 9.76 30.62 0.30 -0.75 16 26 C -0.12 -1.24 9.75 30.62 0.30 -0.94 16 27 C 0.11 1.63 6.62 86.73 0.57 2.21 16 28 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 30 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 31 H 0.42 5.93 8.31 -92.71 -0.77 5.16 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.66 8.14 -2.38 -0.02 1.65 16 34 H 0.08 1.32 6.01 -2.39 -0.01 1.31 16 35 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.41 2.71 8.83 -92.71 -0.82 1.89 16 37 H 0.41 2.86 8.93 -92.71 -0.83 2.03 16 38 H 0.12 1.11 8.02 -2.39 -0.02 1.09 16 39 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.12 1.23 7.86 -2.39 -0.02 1.21 16 41 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.16 7.69 -2.39 -0.02 1.15 16 Total: -1.00 -78.90 380.08 -1.38 -80.28 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -1.37 Total: 15.06 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 5.50 Total: 7.03 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -6.21 Total: -92.87 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -0.15 Total: -46.28 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.05 Total: -9.49 kcal Total: -78.90 -1.38 -80.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283838315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.934 kcal (2) G-P(sol) polarization free energy of solvation -78.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds