Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35321 * 126.65978 * 2 1 4 4 C 1.42269 * 103.92009 * 180.02562 * 3 2 1 5 5 C 1.48334 * 126.93993 * 179.97438 * 4 3 2 6 6 O 1.21491 * 119.99828 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99991 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99830 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.46958 * 35.00331 * 8 7 5 10 10 C 1.53000 * 109.46861 * 274.99901 * 8 7 5 11 11 C 1.52997 * 109.47004 * 154.99864 * 8 7 5 12 12 H 1.09001 * 109.47502 * 295.00420 * 11 8 7 13 13 C 1.53006 * 109.47127 * 55.00263 * 11 8 7 14 14 N 1.46500 * 109.47007 * 175.00044 * 11 8 7 15 15 C 1.34773 * 119.99910 * 155.00372 * 14 11 8 16 16 O 1.21288 * 120.00271 * 359.97438 * 15 14 11 17 17 C 1.50699 * 119.99928 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47331 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00488 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99536 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00410 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99884 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00262 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47021 * 59.99521 * 23 21 19 25 25 H 1.48493 * 109.47221 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46623 * 299.99932 * 23 21 19 27 27 N 1.30987 * 106.12661 * 0.26023 * 4 3 2 28 28 O 1.20907 * 111.43632 * 359.53462 * 27 4 3 29 29 H 1.08995 * 109.46734 * 90.00943 * 1 2 3 30 30 H 1.09004 * 109.46795 * 210.00152 * 1 2 3 31 31 H 1.08995 * 109.47385 * 330.00223 * 1 2 3 32 32 H 1.07993 * 128.04251 * 359.97438 * 3 2 1 33 33 H 0.97001 * 120.00108 * 0.02562 * 7 5 4 34 34 H 1.09002 * 109.46818 * 180.02562 * 10 8 7 35 35 H 1.08994 * 109.47281 * 299.99657 * 10 8 7 36 36 H 1.09004 * 109.47031 * 60.00509 * 10 8 7 37 37 H 1.09001 * 109.47002 * 299.99574 * 13 11 8 38 38 H 1.08993 * 109.46955 * 60.00011 * 13 11 8 39 39 H 1.09000 * 109.47050 * 179.97438 * 13 11 8 40 40 H 0.96995 * 120.00293 * 334.99551 * 14 11 8 41 41 H 1.09000 * 109.47712 * 299.99892 * 17 15 14 42 42 H 1.08995 * 109.47183 * 60.00106 * 17 15 14 43 43 H 0.97002 * 119.99766 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5356 -0.0006 5 6 4.9075 1.2844 -0.0014 6 8 4.9007 2.4993 -0.0021 7 7 6.0785 0.6171 -0.0014 8 6 7.3431 1.3567 -0.0016 9 1 7.2318 2.2669 0.5878 10 6 7.7197 1.7225 -1.4387 11 6 8.4434 0.4858 0.6081 12 1 8.2188 0.2988 1.6582 13 6 8.5150 -0.8454 -0.1430 14 7 9.7301 1.1776 0.4995 15 6 10.7240 0.8915 1.3636 16 8 10.5530 0.0616 2.2314 17 6 12.0479 1.6027 1.2516 18 16 13.1654 1.0047 2.5438 19 6 14.5921 1.9755 2.1880 20 1 14.5764 2.6779 1.3678 21 6 15.7361 1.8374 2.9617 22 7 15.7554 0.9809 3.9610 23 14 17.2485 2.8671 2.5848 24 1 16.9081 4.3078 2.7016 25 1 18.3271 2.5340 3.5496 26 1 17.7123 2.5784 1.2039 27 7 3.4762 -0.7655 -0.0066 28 8 2.3074 -1.0749 -0.0005 29 1 -0.3632 -0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 2.0300 2.1272 -0.0004 33 1 6.0839 -0.3529 -0.0013 34 1 8.6608 2.2724 -1.4389 35 1 7.8310 0.8123 -2.0280 36 1 6.9358 2.3430 -1.8730 37 1 7.5576 -1.3601 -0.0622 38 1 8.7396 -0.6584 -1.1930 39 1 9.2992 -1.4656 0.2911 40 1 9.8669 1.8415 -0.1943 41 1 12.4850 1.4050 0.2728 42 1 11.8954 2.6753 1.3715 43 1 16.5551 0.8841 4.5015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285285978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = -13.636454 kcal Electronic energy + Delta-G solvation = -26164.060920 eV Core-core repulsion = 22146.168112 eV Total energy + Delta-G solvation = -4017.892809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.55710 -40.47268 -39.31939 -37.07065 -34.63997 -34.32686 -33.67574 -32.43189 -31.34044 -29.82446 -28.51440 -28.38198 -25.82707 -25.49839 -24.42769 -23.17930 -21.17390 -20.48155 -19.99672 -18.31640 -18.28066 -17.81918 -17.38843 -16.62252 -16.22512 -15.90149 -15.24951 -15.04550 -14.82891 -14.80432 -14.61141 -14.26436 -14.12477 -13.95812 -13.85548 -13.38654 -13.21043 -13.03560 -12.89905 -12.58175 -12.49317 -12.08341 -11.95848 -11.93809 -11.30145 -11.12988 -11.04841 -11.03836 -10.93744 -10.77602 -10.69227 -9.93950 -9.83591 -9.59638 -9.44237 -9.07616 -9.00331 -8.25199 -6.50800 -6.21905 -3.92773 0.63729 1.17606 2.32216 2.49783 2.73294 3.03082 3.05667 3.23563 3.27576 3.30895 3.47954 3.70132 3.98861 4.20128 4.28100 4.42724 4.59001 4.62396 4.73704 4.80239 4.84682 5.01646 5.06728 5.13085 5.14235 5.17229 5.20406 5.37210 5.43355 5.45789 5.57655 5.63087 5.75392 5.86877 5.90234 5.98239 6.12226 6.15688 6.55353 6.91745 7.49215 7.58804 7.62790 7.66809 8.34622 8.55648 9.23330 10.85438 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.035263 B = 0.001696 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.837870 B =16508.848261 C =16777.745143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.031 4.031 3 C -0.185 4.185 4 C -0.025 4.025 5 C 0.602 3.398 6 O -0.518 6.518 7 N -0.706 5.706 8 C 0.135 3.865 9 H 0.100 0.900 10 C -0.168 4.168 11 C 0.138 3.862 12 H 0.095 0.905 13 C -0.169 4.169 14 N -0.732 5.732 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 N -0.331 5.331 28 O 0.123 5.877 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.182 0.818 33 H 0.408 0.592 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.778 -1.235 -12.851 33.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 C -0.207 4.207 4 C -0.184 4.184 5 C 0.385 3.615 6 O -0.392 6.392 7 N -0.360 5.360 8 C 0.031 3.969 9 H 0.118 0.882 10 C -0.227 4.227 11 C 0.032 3.968 12 H 0.113 0.887 13 C -0.228 4.228 14 N -0.388 5.388 15 C 0.321 3.679 16 O -0.388 6.388 17 C -0.304 4.304 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 N -0.032 5.032 28 O 0.047 5.953 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.199 0.801 33 H 0.246 0.754 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -30.010 -2.808 -11.240 32.168 hybrid contribution 0.931 2.204 -1.590 2.873 sum -29.079 -0.604 -12.829 31.789 Atomic orbital electron populations 1.20402 0.83228 1.05117 1.04488 1.24547 0.96644 0.85329 1.02900 1.22454 0.89608 1.01659 1.07011 1.23473 0.96741 0.90230 1.07929 1.16845 0.81562 0.86372 0.76690 1.90821 1.86683 1.12394 1.49276 1.45938 1.04840 1.11046 1.74171 1.21223 0.81992 0.95759 0.97967 0.88208 1.22259 1.02268 1.02411 0.95712 1.20952 0.82899 0.91574 1.01386 0.88655 1.22281 1.02397 0.97039 1.01041 1.46069 1.12644 1.44514 1.35584 1.20341 0.84942 0.82311 0.80319 1.90708 1.81463 1.32779 1.33877 1.23536 0.96417 1.03346 1.07147 1.85395 1.07060 1.54459 1.36312 1.22831 0.99110 1.26867 1.19711 0.90952 1.24987 0.98473 0.95591 0.94466 1.70009 1.29231 1.33622 1.17427 0.86223 0.80887 0.80098 0.78292 1.19934 1.20802 1.19937 1.74186 0.97425 1.15497 1.16099 1.84784 1.11065 1.33500 1.65966 0.89044 0.89427 0.88627 0.80108 0.75435 0.91008 0.91517 0.91545 0.92205 0.91749 0.90824 0.76530 0.89129 0.89115 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.11 10.45 36.01 0.38 0.27 16 2 C -0.03 -0.18 7.47 -35.35 -0.26 -0.44 16 3 C -0.18 -1.39 10.92 -39.07 -0.43 -1.81 16 4 C -0.02 -0.24 7.19 -82.52 -0.59 -0.84 16 5 C 0.60 6.78 7.81 -12.10 -0.09 6.68 16 6 O -0.52 -7.14 16.61 5.37 0.09 -7.05 16 7 N -0.71 -6.86 4.99 -54.59 -0.27 -7.13 16 8 C 0.14 1.34 2.62 -67.93 -0.18 1.16 16 9 H 0.10 1.13 7.58 -51.93 -0.39 0.73 16 10 C -0.17 -1.41 9.00 37.16 0.33 -1.08 16 11 C 0.14 1.58 2.62 -67.93 -0.18 1.40 16 12 H 0.10 1.30 7.58 -51.93 -0.39 0.90 16 13 C -0.17 -1.75 9.00 37.16 0.33 -1.41 16 14 N -0.73 -9.40 4.99 -53.80 -0.27 -9.67 16 15 C 0.53 9.71 7.81 -10.99 -0.09 9.63 16 16 O -0.51 -11.40 15.53 5.55 0.09 -11.31 16 17 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 23 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 N -0.33 -3.18 11.84 33.29 0.39 -2.79 16 28 O 0.12 0.96 11.18 17.24 0.19 1.16 16 29 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 30 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 31 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.41 3.53 6.34 -40.82 -0.26 3.27 16 34 H 0.07 0.52 6.29 -51.93 -0.33 0.20 16 35 H 0.07 0.51 6.56 -51.93 -0.34 0.17 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.51 6.29 -51.93 -0.33 0.18 16 38 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.40 4.03 6.58 -40.82 -0.27 3.76 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -36.51 380.79 -6.47 -42.99 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.58 Total: 3.14 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.36 Total: -2.23 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.59 Total: -45.02 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.37 Total: -17.20 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.51 -6.47 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285285978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.350 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds