Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35316 * 126.66688 * 2 1 4 4 C 1.42277 * 103.92225 * 180.09094 * 3 2 1 5 5 C 1.48329 * 126.93940 * 179.91240 * 4 3 2 6 6 O 1.21493 * 120.00057 * 359.70517 * 5 4 3 7 7 N 1.34775 * 119.99859 * 179.70244 * 5 4 3 8 8 C 1.46507 * 119.99880 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.47101 * 325.00423 * 8 7 5 10 10 C 1.53004 * 109.46732 * 85.00694 * 8 7 5 11 11 C 1.52999 * 109.47137 * 205.00250 * 8 7 5 12 12 H 1.09004 * 109.47434 * 300.00316 * 11 8 7 13 13 C 1.52997 * 109.47114 * 60.00123 * 11 8 7 14 14 N 1.46498 * 109.46963 * 179.97438 * 11 8 7 15 15 C 1.34777 * 119.99828 * 154.72290 * 14 11 8 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 11 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 11 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 N 1.30988 * 106.12024 * 359.64383 * 4 3 2 28 28 O 1.20903 * 111.44113 * 0.22765 * 27 4 3 29 29 H 1.08999 * 109.47241 * 180.28747 * 1 2 3 30 30 H 1.08996 * 109.47017 * 300.28775 * 1 2 3 31 31 H 1.08996 * 109.46748 * 60.28928 * 1 2 3 32 32 H 1.07993 * 128.04106 * 359.96195 * 3 2 1 33 33 H 0.97000 * 120.00517 * 0.02562 * 7 5 4 34 34 H 1.09010 * 109.46876 * 299.99572 * 10 8 7 35 35 H 1.08994 * 109.47427 * 59.99463 * 10 8 7 36 36 H 1.08999 * 109.46966 * 180.02562 * 10 8 7 37 37 H 1.08997 * 109.47293 * 179.97438 * 13 11 8 38 38 H 1.09003 * 109.47189 * 300.00067 * 13 11 8 39 39 H 1.09009 * 109.47238 * 59.99946 * 13 11 8 40 40 H 0.97001 * 120.00384 * 335.00737 * 14 11 8 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6272 0.5353 -0.0022 5 6 4.9076 1.2840 -0.0049 6 8 4.9009 2.4989 -0.0109 7 7 6.0785 0.6166 -0.0007 8 6 7.3432 1.3561 -0.0040 9 1 7.2322 2.2631 -0.5983 10 6 7.7193 1.7296 1.4313 11 6 8.4437 0.4818 -0.6084 12 1 8.5547 -0.4253 -0.0142 13 6 8.0677 0.1082 -2.0437 14 7 9.7082 1.2215 -0.6122 15 6 10.8792 0.5543 -0.6025 16 8 10.8862 -0.6585 -0.5958 17 6 12.1800 1.3152 -0.6001 18 16 13.5624 0.1469 -0.5873 19 6 14.9161 1.2748 -0.5874 20 1 14.7324 2.3391 -0.5937 21 6 16.2187 0.7955 -0.5782 22 7 16.4428 -0.5016 -0.5700 23 14 17.6539 1.9912 -0.5789 24 1 18.0277 2.3167 0.8210 25 1 18.8136 1.3722 -1.2696 26 1 17.2614 3.2353 -1.2885 27 7 3.4761 -0.7658 0.0046 28 8 2.3073 -1.0750 0.0059 29 1 -0.3634 -1.0276 0.0052 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5093 -0.8926 32 1 2.0302 2.1271 -0.0006 33 1 6.0839 -0.3534 0.0037 34 1 6.9352 2.3525 1.8620 35 1 7.8301 0.8226 2.0256 36 1 8.6600 2.2801 1.4289 37 1 8.8518 -0.5143 -2.4744 38 1 7.1267 -0.4420 -2.0413 39 1 7.9567 1.0153 -2.6380 40 1 9.7027 2.1915 -0.6176 41 1 12.2387 1.9373 -1.4933 42 1 12.2296 1.9472 0.2866 43 1 17.3530 -0.8364 -0.5639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285285991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = -18.414270 kcal Electronic energy + Delta-G solvation = -26158.488495 eV Core-core repulsion = 22140.388505 eV Total energy + Delta-G solvation = -4018.099990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.56000 -40.41598 -39.30801 -36.91922 -34.64132 -34.34067 -33.69746 -32.43650 -31.26209 -30.18638 -28.53108 -28.38423 -25.56489 -25.48805 -23.87874 -23.14397 -21.24908 -20.87630 -20.13904 -18.31818 -18.24787 -17.80315 -17.38924 -16.78083 -15.94803 -15.85102 -15.34609 -15.03388 -14.81076 -14.77759 -14.26893 -14.20457 -14.02572 -13.95724 -13.85671 -13.61923 -13.23888 -13.04233 -12.75179 -12.59200 -12.47602 -12.03686 -11.96675 -11.88099 -11.57694 -11.06981 -11.03374 -10.97656 -10.92128 -10.77633 -10.71069 -9.93998 -9.82825 -9.64144 -9.44644 -9.08076 -8.97412 -8.25291 -6.51221 -6.22576 -3.93264 0.63720 1.16778 2.30852 2.49140 2.72783 3.03520 3.06082 3.22028 3.27731 3.31701 3.47775 3.71700 3.99565 4.19540 4.23706 4.43374 4.61163 4.67730 4.74497 4.79692 4.89082 5.00493 5.08708 5.12753 5.19736 5.24283 5.27543 5.42832 5.43196 5.50902 5.61265 5.64775 5.82333 5.86798 5.96191 6.02541 6.11253 6.13207 6.55521 6.91822 7.49068 7.58786 7.62981 7.66367 8.34412 8.55478 9.22913 10.84849 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.040234 B = 0.001688 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.761128 B =16581.216034 C =16956.873260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.031 4.031 3 C -0.186 4.186 4 C -0.025 4.025 5 C 0.603 3.397 6 O -0.519 6.519 7 N -0.704 5.704 8 C 0.136 3.864 9 H 0.097 0.903 10 C -0.164 4.164 11 C 0.138 3.862 12 H 0.094 0.906 13 C -0.164 4.164 14 N -0.730 5.730 15 C 0.536 3.464 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.330 5.330 28 O 0.123 5.877 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.181 0.819 33 H 0.409 0.591 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.142 3.855 1.225 33.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.208 4.208 4 C -0.184 4.184 5 C 0.387 3.613 6 O -0.393 6.393 7 N -0.356 5.356 8 C 0.031 3.969 9 H 0.115 0.885 10 C -0.223 4.223 11 C 0.032 3.968 12 H 0.112 0.888 13 C -0.223 4.223 14 N -0.385 5.385 15 C 0.322 3.678 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 N -0.031 5.031 28 O 0.047 5.953 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.199 0.801 33 H 0.245 0.755 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.234 0.766 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -32.042 1.570 1.233 32.104 hybrid contribution 0.606 2.904 -0.012 2.967 sum -31.437 4.474 1.221 31.777 Atomic orbital electron populations 1.20403 0.83253 1.05091 1.04523 1.24545 0.96645 0.85340 1.02895 1.22434 0.89627 1.01660 1.07090 1.23475 0.96725 0.90217 1.07978 1.16806 0.81489 0.86340 0.76693 1.90816 1.86671 1.12387 1.49461 1.45789 1.04868 1.10975 1.74000 1.21257 0.81914 0.95623 0.98059 0.88456 1.22191 1.02383 1.02418 0.95273 1.20987 0.82943 0.95622 0.97260 0.88762 1.22203 1.01922 1.02117 0.96038 1.45930 1.04625 1.10019 1.77966 1.20314 0.84456 0.88209 0.74814 1.90706 1.87019 1.13782 1.47360 1.23536 0.97239 1.04609 1.05038 1.85394 0.93168 1.07992 1.96723 1.22872 0.92253 0.94326 1.58992 0.90903 1.24990 0.98351 0.95695 0.94505 1.70015 1.21468 1.11960 1.46841 0.86169 0.80673 0.80299 0.78364 1.20265 1.20744 1.19691 1.74194 0.97401 1.15492 1.16027 1.84796 1.11077 1.33509 1.65906 0.89503 0.88787 0.88781 0.80134 0.75549 0.91842 0.91928 0.90686 0.91116 0.92008 0.92312 0.76624 0.89129 0.89130 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 10.45 36.01 0.38 0.28 16 2 C -0.03 -0.17 7.47 -35.35 -0.26 -0.44 16 3 C -0.19 -1.35 10.92 -39.07 -0.43 -1.78 16 4 C -0.02 -0.24 7.19 -82.52 -0.59 -0.83 16 5 C 0.60 6.59 7.81 -12.11 -0.09 6.49 16 6 O -0.52 -6.92 16.61 5.37 0.09 -6.83 16 7 N -0.70 -6.71 4.38 -54.59 -0.24 -6.95 16 8 C 0.14 1.32 2.21 -67.93 -0.15 1.18 16 9 H 0.10 0.98 7.58 -51.93 -0.39 0.59 16 10 C -0.16 -1.60 9.33 37.16 0.35 -1.25 16 11 C 0.14 1.56 2.21 -67.93 -0.15 1.41 16 12 H 0.09 1.21 7.57 -51.93 -0.39 0.81 16 13 C -0.16 -1.82 9.33 37.16 0.35 -1.47 16 14 N -0.73 -9.23 4.38 -53.81 -0.24 -9.47 16 15 C 0.54 9.59 7.82 -10.98 -0.09 9.51 16 16 O -0.51 -11.27 15.52 5.55 0.09 -11.18 16 17 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 23 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 N -0.33 -3.15 11.84 33.30 0.39 -2.76 16 28 O 0.12 0.96 11.18 17.24 0.19 1.15 16 29 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 30 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 32 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.41 3.54 8.15 -40.82 -0.33 3.20 16 34 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.60 7.44 -51.93 -0.39 0.21 16 39 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.40 3.97 8.39 -40.82 -0.34 3.63 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -36.25 388.49 -6.64 -42.89 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.01 Total: 2.74 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.28 Total: -2.63 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.65 Total: -44.54 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.37 Total: -16.86 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.25 -6.64 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285285991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.478 kcal (2) G-P(sol) polarization free energy of solvation -36.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds