Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35316 * 126.66688 * 2 1 4 4 C 1.42277 * 103.92225 * 180.09094 * 3 2 1 5 5 C 1.48329 * 126.93940 * 179.91240 * 4 3 2 6 6 O 1.21493 * 120.00057 * 359.70517 * 5 4 3 7 7 N 1.34775 * 119.99859 * 179.70244 * 5 4 3 8 8 C 1.46507 * 119.99880 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.47101 * 325.00423 * 8 7 5 10 10 C 1.53004 * 109.46732 * 85.00694 * 8 7 5 11 11 C 1.52999 * 109.47137 * 205.00250 * 8 7 5 12 12 H 1.09004 * 109.47434 * 300.00316 * 11 8 7 13 13 C 1.52997 * 109.47114 * 60.00123 * 11 8 7 14 14 N 1.46498 * 109.46963 * 179.97438 * 11 8 7 15 15 C 1.34777 * 119.99828 * 154.72290 * 14 11 8 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 11 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 11 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 N 1.30988 * 106.12024 * 359.64383 * 4 3 2 28 28 O 1.20903 * 111.44113 * 0.22765 * 27 4 3 29 29 H 1.08999 * 109.47241 * 180.28747 * 1 2 3 30 30 H 1.08996 * 109.47017 * 300.28775 * 1 2 3 31 31 H 1.08996 * 109.46748 * 60.28928 * 1 2 3 32 32 H 1.07993 * 128.04106 * 359.96195 * 3 2 1 33 33 H 0.97000 * 120.00517 * 0.02562 * 7 5 4 34 34 H 1.09010 * 109.46876 * 299.99572 * 10 8 7 35 35 H 1.08994 * 109.47427 * 59.99463 * 10 8 7 36 36 H 1.08999 * 109.46966 * 180.02562 * 10 8 7 37 37 H 1.08997 * 109.47293 * 179.97438 * 13 11 8 38 38 H 1.09003 * 109.47189 * 300.00067 * 13 11 8 39 39 H 1.09009 * 109.47238 * 59.99946 * 13 11 8 40 40 H 0.97001 * 120.00384 * 335.00737 * 14 11 8 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6272 0.5353 -0.0022 5 6 4.9076 1.2840 -0.0049 6 8 4.9009 2.4989 -0.0109 7 7 6.0785 0.6166 -0.0007 8 6 7.3432 1.3561 -0.0040 9 1 7.2322 2.2631 -0.5983 10 6 7.7193 1.7296 1.4313 11 6 8.4437 0.4818 -0.6084 12 1 8.5547 -0.4253 -0.0142 13 6 8.0677 0.1082 -2.0437 14 7 9.7082 1.2215 -0.6122 15 6 10.8792 0.5543 -0.6025 16 8 10.8862 -0.6585 -0.5958 17 6 12.1800 1.3152 -0.6001 18 16 13.5624 0.1469 -0.5873 19 6 14.9161 1.2748 -0.5874 20 1 14.7324 2.3391 -0.5937 21 6 16.2187 0.7955 -0.5782 22 7 16.4428 -0.5016 -0.5700 23 14 17.6539 1.9912 -0.5789 24 1 18.0277 2.3167 0.8210 25 1 18.8136 1.3722 -1.2696 26 1 17.2614 3.2353 -1.2885 27 7 3.4761 -0.7658 0.0046 28 8 2.3073 -1.0750 0.0059 29 1 -0.3634 -1.0276 0.0052 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5093 -0.8926 32 1 2.0302 2.1271 -0.0006 33 1 6.0839 -0.3534 0.0037 34 1 6.9352 2.3525 1.8620 35 1 7.8301 0.8226 2.0256 36 1 8.6600 2.2801 1.4289 37 1 8.8518 -0.5143 -2.4744 38 1 7.1267 -0.4420 -2.0413 39 1 7.9567 1.0153 -2.6380 40 1 9.7027 2.1915 -0.6176 41 1 12.2387 1.9373 -1.4933 42 1 12.2296 1.9472 0.2866 43 1 17.3530 -0.8364 -0.5639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285285991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = -44.740753 kcal Electronic energy + Delta-G solvation = -26159.630097 eV Core-core repulsion = 22140.388505 eV Total energy + Delta-G solvation = -4019.241592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.16754 -41.38360 -40.55235 -38.00181 -35.38600 -35.16558 -34.58271 -34.31075 -32.44207 -31.08961 -29.92209 -28.70775 -27.65708 -26.29433 -24.78287 -23.79207 -22.24234 -21.89500 -21.15944 -19.89440 -18.93283 -18.73390 -18.18024 -18.03798 -17.06204 -16.97316 -16.87524 -16.47020 -16.20759 -15.80378 -15.52533 -15.08504 -14.88210 -14.76951 -14.51632 -14.49074 -14.41030 -13.95789 -13.81740 -13.43775 -13.33417 -13.29397 -13.16086 -12.89588 -12.81050 -12.62586 -12.58222 -12.45073 -11.89157 -11.72508 -11.60515 -11.60364 -11.14194 -10.98910 -10.52721 -10.40395 -10.27353 -10.15118 -8.66045 -8.34724 -6.12378 -0.01930 0.64217 1.22895 1.41995 1.42313 1.53085 1.58860 1.67638 1.94548 2.02806 2.26918 2.35023 2.82382 2.99638 3.28415 3.33261 3.51452 3.77913 3.92485 3.94070 3.99922 4.11991 4.29356 4.30946 4.33821 4.38674 4.51960 4.60481 4.62977 4.76957 4.78292 4.82889 4.84881 4.87052 5.13019 5.14818 5.17577 5.25718 5.41302 5.42337 6.11785 6.19943 6.44747 6.77054 6.98610 7.06925 7.20687 8.74413 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.040234 B = 0.001688 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.761128 B =16581.216034 C =16956.873260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.202 4.202 4 C -0.047 4.047 5 C 0.604 3.396 6 O -0.547 6.547 7 N -0.698 5.698 8 C 0.147 3.853 9 H 0.102 0.898 10 C -0.162 4.162 11 C 0.142 3.858 12 H 0.081 0.919 13 C -0.159 4.159 14 N -0.705 5.705 15 C 0.541 3.459 16 O -0.560 6.560 17 C -0.131 4.131 18 S -0.149 6.149 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.258 1.258 27 N -0.350 5.350 28 O 0.121 5.879 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.193 0.807 33 H 0.413 0.587 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.996 5.894 1.210 35.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 C -0.224 4.224 4 C -0.204 4.204 5 C 0.389 3.611 6 O -0.423 6.423 7 N -0.350 5.350 8 C 0.042 3.958 9 H 0.120 0.880 10 C -0.220 4.220 11 C 0.037 3.963 12 H 0.099 0.901 13 C -0.217 4.217 14 N -0.359 5.359 15 C 0.327 3.673 16 O -0.438 6.438 17 C -0.282 4.282 18 S 0.078 5.922 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.182 1.182 27 N -0.051 5.051 28 O 0.045 5.955 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.210 0.790 33 H 0.250 0.750 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.255 0.745 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -33.935 3.636 1.218 34.151 hybrid contribution 0.963 2.262 -0.004 2.459 sum -32.971 5.898 1.213 33.517 Atomic orbital electron populations 1.20682 0.79959 1.06478 1.06103 1.25267 0.98083 0.84000 1.00209 1.22681 0.88892 1.02792 1.08079 1.23500 0.97021 0.90641 1.09285 1.16967 0.82027 0.86084 0.76013 1.90791 1.87129 1.13460 1.50943 1.45743 1.04580 1.11187 1.73472 1.21110 0.81378 0.95203 0.98081 0.87994 1.22168 1.02607 1.02244 0.94957 1.21011 0.82470 0.95291 0.97564 0.90123 1.22142 1.01717 1.02356 0.95530 1.45617 1.03653 1.10894 1.75771 1.19996 0.85168 0.87435 0.74736 1.90700 1.87593 1.15621 1.49857 1.23379 0.94933 1.02906 1.06960 1.85563 0.97114 1.12475 1.97049 1.23218 0.92768 0.94688 1.58826 0.89892 1.26106 1.01595 0.97602 0.93745 1.70179 1.22234 1.14309 1.48036 0.84970 0.76413 0.77908 0.78792 1.19328 1.20341 1.18229 1.74189 0.98401 1.15493 1.16972 1.84764 1.10878 1.34358 1.65546 0.88243 0.87055 0.87051 0.78954 0.75013 0.92105 0.92330 0.90004 0.93598 0.90548 0.91166 0.74536 0.87173 0.86996 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.02 10.45 71.24 0.74 0.77 16 2 C -0.01 -0.12 7.47 25.01 0.19 0.07 16 3 C -0.20 -2.71 10.92 22.60 0.25 -2.46 16 4 C -0.05 -0.88 7.19 42.96 0.31 -0.57 16 5 C 0.60 12.90 7.81 86.93 0.68 13.58 16 6 O -0.55 -14.26 16.61 -3.69 -0.06 -14.32 16 7 N -0.70 -12.83 4.38 -444.94 -1.95 -14.78 16 8 C 0.15 2.68 2.21 44.99 0.10 2.78 16 9 H 0.10 1.85 7.58 -2.39 -0.02 1.84 16 10 C -0.16 -2.94 9.33 71.98 0.67 -2.27 16 11 C 0.14 3.08 2.21 44.99 0.10 3.18 16 12 H 0.08 2.06 7.57 -2.39 -0.02 2.04 16 13 C -0.16 -3.39 9.33 71.98 0.67 -2.72 16 14 N -0.70 -16.79 4.38 -442.53 -1.94 -18.73 16 15 C 0.54 19.10 7.82 87.66 0.69 19.79 16 16 O -0.56 -25.04 15.52 -3.04 -0.05 -25.09 16 17 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 18 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 19 C -0.55 -31.09 9.50 67.96 0.65 -30.44 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.90 13.22 21.65 0.29 -55.62 16 23 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 27 N -0.35 -6.51 11.84 -49.51 -0.59 -7.09 16 28 O 0.12 1.76 11.18 71.86 0.80 2.56 16 29 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.41 6.98 8.15 -92.71 -0.76 6.23 16 34 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.37 7.45 -2.39 -0.02 1.35 16 37 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.40 7.44 -2.39 -0.02 1.39 16 39 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.42 7.22 8.39 -92.71 -0.78 6.44 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 42 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 43 H 0.27 15.43 8.31 -92.72 -0.77 14.66 16 Total: -1.00 -81.19 388.49 2.84 -78.35 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.48 Total: 20.11 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.94 Total: -1.61 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -4.19 Total: -96.22 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: 0.69 Total: -36.85 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -81.19 2.84 -78.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285285991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.609 kcal (2) G-P(sol) polarization free energy of solvation -81.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds