Wall clock time and date at job start Sat Apr 11 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34254 * 126.52465 * 2 1 4 4 C 1.34052 * 108.23117 * 179.97438 * 3 2 1 5 5 N 1.29933 * 109.23730 * 359.74341 * 4 3 2 6 6 C 1.36064 * 108.47958 * 0.40815 * 5 4 3 7 7 C 1.47419 * 126.44854 * 179.86151 * 6 5 4 8 8 O 1.21614 * 120.00414 * 179.68718 * 7 6 5 9 9 N 1.34781 * 120.00268 * 359.68924 * 7 6 5 10 10 C 1.46498 * 120.00367 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47113 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47140 * 294.99606 * 11 10 9 13 13 C 1.53006 * 109.47164 * 174.99658 * 11 10 9 14 14 N 1.46500 * 109.47204 * 54.99733 * 11 10 9 15 15 C 1.46505 * 120.00078 * 60.00024 * 14 11 10 16 16 C 1.34771 * 120.00141 * 239.99880 * 14 11 10 17 17 O 1.21281 * 120.00208 * 359.97438 * 16 14 11 18 18 C 1.50699 * 120.00070 * 180.02562 * 16 14 11 19 19 S 1.81001 * 109.47249 * 180.02562 * 18 16 14 20 20 C 1.76192 * 100.00228 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00179 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00206 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99833 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00008 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47378 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47199 * 120.00508 * 24 22 20 27 27 H 1.48499 * 109.47189 * 240.00371 * 24 22 20 28 28 H 1.09000 * 109.47234 * 270.03866 * 1 2 3 29 29 H 1.08995 * 109.47461 * 30.04853 * 1 2 3 30 30 H 1.09001 * 109.46868 * 150.04880 * 1 2 3 31 31 H 1.07997 * 125.37954 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99479 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47421 * 59.99558 * 10 9 7 34 34 H 1.09006 * 109.46474 * 299.99792 * 10 9 7 35 35 H 1.09001 * 109.47002 * 59.99738 * 13 11 10 36 36 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47050 * 300.00004 * 13 11 10 38 38 H 1.09004 * 109.47130 * 89.99894 * 15 14 11 39 39 H 1.08997 * 109.47212 * 209.99646 * 15 14 11 40 40 H 1.09003 * 109.46772 * 330.00259 * 15 14 11 41 41 H 1.08999 * 109.47401 * 300.00043 * 18 16 14 42 42 H 1.09002 * 109.47014 * 60.00321 * 18 16 14 43 43 H 0.97001 * 120.00119 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 0.0006 5 7 3.6002 -0.6410 0.0064 6 6 2.3170 -1.0935 0.0006 7 6 1.8854 -2.5031 0.0013 8 8 0.7004 -2.7763 0.0014 9 7 2.8042 -3.4893 0.0019 10 6 2.3753 -4.8901 0.0021 11 6 3.6053 -5.8000 0.0021 12 1 4.1556 -5.6671 -0.9293 13 6 3.1606 -7.2586 0.1281 14 7 4.4691 -5.4534 1.1335 15 6 3.9571 -5.5504 2.5027 16 6 5.7348 -5.0454 0.9147 17 8 6.1589 -4.9656 -0.2187 18 6 6.6235 -4.6894 2.0785 19 16 8.2486 -4.1824 1.4637 20 6 9.0577 -3.8331 2.9894 21 1 8.5286 -3.9590 3.9225 22 6 10.3751 -3.3960 2.9922 23 7 11.0199 -3.2421 1.8550 24 14 11.2326 -3.0250 4.6098 25 1 10.2967 -3.2757 5.7351 26 1 12.4227 -3.9018 4.7516 27 1 11.6603 -1.6031 4.6285 28 1 -0.3634 0.0007 1.0277 29 1 -0.3634 0.8895 -0.5146 30 1 -0.3633 -0.8904 -0.5131 31 1 4.4489 1.2979 0.0011 32 1 3.7494 -3.2714 0.0015 33 1 1.7779 -5.0873 -0.8881 34 1 1.7772 -5.0868 0.8920 35 1 2.5179 -7.5165 -0.7136 36 1 4.0369 -7.9068 0.1286 37 1 2.6103 -7.3915 1.0595 38 1 4.1531 -6.5487 2.8941 39 1 4.4541 -4.8103 3.1298 40 1 2.8830 -5.3645 2.5029 41 1 6.1759 -3.8695 2.6401 42 1 6.7352 -5.5569 2.7290 43 1 11.9405 -2.9364 1.8569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285620713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:49 Heat of formation + Delta-G solvation = -47.482927 kcal Electronic energy + Delta-G solvation = -27396.013398 eV Core-core repulsion = 23376.652896 eV Total energy + Delta-G solvation = -4019.360502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.61388 -40.15529 -39.21878 -36.53299 -35.04290 -34.24299 -32.61538 -32.42987 -32.06394 -28.75362 -28.05890 -26.86273 -26.36447 -25.48802 -23.80318 -22.16679 -21.57477 -20.58744 -19.21549 -18.27668 -17.73884 -17.10965 -16.93585 -16.40447 -16.37860 -15.64960 -15.37011 -15.03983 -14.85096 -14.80642 -14.26596 -14.13665 -13.66581 -13.42218 -13.36003 -13.18628 -13.09982 -12.91547 -12.70672 -12.59447 -12.38201 -12.22950 -12.06321 -11.78539 -11.52081 -11.12120 -11.07779 -11.01242 -10.91202 -10.75537 -10.27624 -9.79917 -9.42025 -9.30784 -9.07556 -9.00678 -8.61732 -8.21966 -6.49382 -6.22022 -3.91936 0.89205 1.89701 2.36076 2.83124 2.99754 3.03193 3.16689 3.20797 3.25607 3.30461 3.59422 3.90513 4.19873 4.39192 4.49023 4.61760 4.84104 4.94111 5.03829 5.05160 5.10293 5.13243 5.16327 5.20066 5.33060 5.41036 5.48005 5.50284 5.57956 5.61118 5.71625 5.73199 5.87428 5.91397 5.92483 5.99875 6.13574 6.25722 6.60713 7.17897 7.45826 7.48797 7.59733 8.01217 8.35136 8.50241 9.23554 10.85373 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.003285 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.183086 B = 8521.862886 C =10578.730581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.040 3.960 3 O -0.201 6.201 4 C 0.181 3.819 5 N -0.456 5.456 6 C -0.081 4.081 7 C 0.605 3.395 8 O -0.543 6.543 9 N -0.706 5.706 10 C 0.111 3.889 11 C 0.123 3.877 12 H 0.110 0.890 13 C -0.155 4.155 14 N -0.620 5.620 15 C 0.079 3.921 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.150 4.150 19 S -0.059 6.059 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.258 0.742 32 H 0.415 0.585 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.131 2.053 -1.889 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 O -0.088 6.088 4 C -0.048 4.048 5 N -0.184 5.184 6 C -0.201 4.201 7 C 0.391 3.609 8 O -0.421 6.421 9 N -0.357 5.357 10 C -0.014 4.014 11 C 0.019 3.981 12 H 0.128 0.872 13 C -0.214 4.214 14 N -0.357 5.357 15 C -0.064 4.064 16 C 0.322 3.678 17 O -0.388 6.388 18 C -0.300 4.300 19 S 0.168 5.832 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.274 0.726 32 H 0.252 0.748 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.613 1.632 -3.647 21.979 hybrid contribution 0.265 0.745 2.516 2.637 sum -21.348 2.378 -1.132 21.509 Atomic orbital electron populations 1.20574 0.82678 1.05301 1.04608 1.23718 0.95155 0.83494 0.99357 1.84386 1.18736 1.36218 1.69457 1.28143 0.85056 0.91237 1.00376 1.70850 1.21295 1.10298 1.16002 1.21457 0.89099 0.95457 1.14051 1.16681 0.85286 0.82707 0.76226 1.90758 1.16207 1.83456 1.51721 1.45746 1.10934 1.05523 1.73480 1.21810 0.96732 0.79930 1.02916 1.21289 0.90557 0.94064 0.92233 0.87211 1.22036 1.02178 0.94690 1.02504 1.47941 1.12475 1.68554 1.06704 1.21740 0.99865 1.02101 0.82695 1.20407 0.80975 0.75630 0.90822 1.90704 1.72928 1.51375 1.23792 1.23553 1.02850 1.04262 0.99355 1.85385 1.00242 1.85913 1.11676 1.22898 1.00235 1.52106 0.92981 0.90964 1.24982 0.96305 0.94862 0.97404 1.70029 1.11364 1.43600 1.25256 0.86133 0.79229 0.78122 0.82109 1.19641 1.20590 1.20575 0.89078 0.90168 0.87060 0.72630 0.74764 0.90159 0.90874 0.91195 0.91374 0.92041 0.92557 0.90657 0.91401 0.89272 0.89299 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.88 36.01 0.36 -0.25 16 2 C 0.04 0.44 7.44 -35.08 -0.26 0.18 16 3 O -0.20 -2.11 10.73 6.51 0.07 -2.04 16 4 C 0.18 1.88 13.19 51.96 0.69 2.56 16 5 N -0.46 -6.39 11.06 -11.49 -0.13 -6.52 16 6 C -0.08 -1.10 6.99 -83.02 -0.58 -1.68 16 7 C 0.60 8.44 7.81 -12.52 -0.10 8.34 16 8 O -0.54 -7.91 14.80 5.26 0.08 -7.83 16 9 N -0.71 -9.38 5.38 -61.38 -0.33 -9.71 16 10 C 0.11 1.20 4.92 -4.04 -0.02 1.18 16 11 C 0.12 1.41 2.80 -67.93 -0.19 1.21 16 12 H 0.11 1.50 6.90 -51.93 -0.36 1.14 16 13 C -0.16 -1.36 9.19 37.16 0.34 -1.02 16 14 N -0.62 -8.29 2.24 -173.93 -0.39 -8.68 16 15 C 0.08 0.83 9.30 59.85 0.56 1.39 16 16 C 0.53 9.76 7.40 -10.99 -0.08 9.67 16 17 O -0.51 -11.23 15.19 5.56 0.08 -11.15 16 18 C -0.15 -3.00 4.71 36.01 0.17 -2.83 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 20 C -0.53 -15.09 9.50 30.94 0.29 -14.79 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 24 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.11 1.00 6.48 -51.93 -0.34 0.66 16 31 H 0.26 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.42 6.30 7.60 -40.82 -0.31 5.99 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.74 6.88 -51.93 -0.36 0.38 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.46 7.67 -51.93 -0.40 0.07 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 40 H 0.07 0.60 6.53 -51.93 -0.34 0.26 16 41 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 42 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -36.33 379.73 -6.06 -42.39 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.74 Total: 4.60 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 1.08 Total: 5.96 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.11 Total: -50.12 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.23 Total: -21.02 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.33 -6.06 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285620713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.089 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds