Wall clock time and date at job start Sat Apr 11 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34254 * 126.52465 * 2 1 4 4 C 1.34052 * 108.23117 * 179.97438 * 3 2 1 5 5 N 1.29933 * 109.23730 * 359.74341 * 4 3 2 6 6 C 1.36064 * 108.47958 * 0.40815 * 5 4 3 7 7 C 1.47419 * 126.44854 * 179.86151 * 6 5 4 8 8 O 1.21614 * 120.00414 * 179.68718 * 7 6 5 9 9 N 1.34781 * 120.00268 * 359.68924 * 7 6 5 10 10 C 1.46498 * 120.00367 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47113 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47140 * 294.99606 * 11 10 9 13 13 C 1.53006 * 109.47164 * 174.99658 * 11 10 9 14 14 N 1.46500 * 109.47204 * 54.99733 * 11 10 9 15 15 C 1.46505 * 120.00078 * 60.00024 * 14 11 10 16 16 C 1.34771 * 120.00141 * 239.99880 * 14 11 10 17 17 O 1.21281 * 120.00208 * 359.97438 * 16 14 11 18 18 C 1.50699 * 120.00070 * 180.02562 * 16 14 11 19 19 S 1.81001 * 109.47249 * 180.02562 * 18 16 14 20 20 C 1.76192 * 100.00228 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00179 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00206 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99833 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00008 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47378 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47199 * 120.00508 * 24 22 20 27 27 H 1.48499 * 109.47189 * 240.00371 * 24 22 20 28 28 H 1.09000 * 109.47234 * 270.03866 * 1 2 3 29 29 H 1.08995 * 109.47461 * 30.04853 * 1 2 3 30 30 H 1.09001 * 109.46868 * 150.04880 * 1 2 3 31 31 H 1.07997 * 125.37954 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99479 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47421 * 59.99558 * 10 9 7 34 34 H 1.09006 * 109.46474 * 299.99792 * 10 9 7 35 35 H 1.09001 * 109.47002 * 59.99738 * 13 11 10 36 36 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47050 * 300.00004 * 13 11 10 38 38 H 1.09004 * 109.47130 * 89.99894 * 15 14 11 39 39 H 1.08997 * 109.47212 * 209.99646 * 15 14 11 40 40 H 1.09003 * 109.46772 * 330.00259 * 15 14 11 41 41 H 1.08999 * 109.47401 * 300.00043 * 18 16 14 42 42 H 1.09002 * 109.47014 * 60.00321 * 18 16 14 43 43 H 0.97001 * 120.00119 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 0.0006 5 7 3.6002 -0.6410 0.0064 6 6 2.3170 -1.0935 0.0006 7 6 1.8854 -2.5031 0.0013 8 8 0.7004 -2.7763 0.0014 9 7 2.8042 -3.4893 0.0019 10 6 2.3753 -4.8901 0.0021 11 6 3.6053 -5.8000 0.0021 12 1 4.1556 -5.6671 -0.9293 13 6 3.1606 -7.2586 0.1281 14 7 4.4691 -5.4534 1.1335 15 6 3.9571 -5.5504 2.5027 16 6 5.7348 -5.0454 0.9147 17 8 6.1589 -4.9656 -0.2187 18 6 6.6235 -4.6894 2.0785 19 16 8.2486 -4.1824 1.4637 20 6 9.0577 -3.8331 2.9894 21 1 8.5286 -3.9590 3.9225 22 6 10.3751 -3.3960 2.9922 23 7 11.0199 -3.2421 1.8550 24 14 11.2326 -3.0250 4.6098 25 1 10.2967 -3.2757 5.7351 26 1 12.4227 -3.9018 4.7516 27 1 11.6603 -1.6031 4.6285 28 1 -0.3634 0.0007 1.0277 29 1 -0.3634 0.8895 -0.5146 30 1 -0.3633 -0.8904 -0.5131 31 1 4.4489 1.2979 0.0011 32 1 3.7494 -3.2714 0.0015 33 1 1.7779 -5.0873 -0.8881 34 1 1.7772 -5.0868 0.8920 35 1 2.5179 -7.5165 -0.7136 36 1 4.0369 -7.9068 0.1286 37 1 2.6103 -7.3915 1.0595 38 1 4.1531 -6.5487 2.8941 39 1 4.4541 -4.8103 3.1298 40 1 2.8830 -5.3645 2.5029 41 1 6.1759 -3.8695 2.6401 42 1 6.7352 -5.5569 2.7290 43 1 11.9405 -2.9364 1.8569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285620713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:48 Heat of formation + Delta-G solvation = -75.783776 kcal Electronic energy + Delta-G solvation = -27397.240615 eV Core-core repulsion = 23376.652896 eV Total energy + Delta-G solvation = -4020.587719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.47244 -41.32425 -40.37783 -37.73882 -35.96359 -35.32432 -34.57604 -33.40355 -33.13374 -30.23001 -28.87520 -27.85801 -27.65039 -27.18214 -24.70717 -23.11209 -22.61943 -21.55381 -20.45707 -19.61500 -19.21169 -18.34061 -17.95162 -17.45057 -17.30430 -16.88784 -16.84461 -16.57082 -16.25814 -15.79189 -15.66864 -15.25667 -14.65988 -14.55771 -14.54589 -14.43719 -13.99634 -13.92151 -13.80395 -13.47861 -13.37554 -13.30284 -13.14684 -13.07075 -12.91918 -12.81437 -12.57668 -12.46749 -11.99978 -11.84092 -11.68813 -11.27366 -11.15085 -10.88643 -10.31099 -10.24905 -9.90083 -9.75598 -8.64810 -8.33949 -6.11214 0.00865 0.99579 1.25747 1.41105 1.45425 1.55392 1.55776 1.57336 1.97898 2.14345 2.17866 2.27821 3.00132 3.08071 3.26836 3.54346 3.60336 3.71066 3.82578 4.05152 4.13416 4.22427 4.22840 4.26387 4.40324 4.46365 4.54828 4.58151 4.62713 4.68878 4.76780 4.87817 4.89812 5.02806 5.06386 5.10947 5.22063 5.32174 5.42519 5.56195 6.18185 6.20232 6.23052 6.51407 6.96963 7.07493 7.12106 8.75359 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.003285 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.183086 B = 8521.862886 C =10578.730581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.048 3.952 3 O -0.197 6.197 4 C 0.192 3.808 5 N -0.503 5.503 6 C -0.117 4.117 7 C 0.602 3.398 8 O -0.554 6.554 9 N -0.710 5.710 10 C 0.114 3.886 11 C 0.124 3.876 12 H 0.083 0.917 13 C -0.148 4.148 14 N -0.604 5.604 15 C 0.071 3.929 16 C 0.534 3.466 17 O -0.560 6.560 18 C -0.124 4.124 19 S -0.145 6.145 20 C -0.545 4.545 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.295 0.705 32 H 0.405 0.595 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.106 2.172 0.110 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.009 4.009 3 O -0.084 6.084 4 C -0.036 4.036 5 N -0.232 5.232 6 C -0.235 4.235 7 C 0.389 3.611 8 O -0.434 6.434 9 N -0.360 5.360 10 C -0.009 4.009 11 C 0.021 3.979 12 H 0.101 0.899 13 C -0.206 4.206 14 N -0.339 5.339 15 C -0.071 4.071 16 C 0.321 3.679 17 O -0.438 6.438 18 C -0.275 4.275 19 S 0.083 5.917 20 C -0.693 4.693 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.546 5.546 24 Si 0.819 3.181 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.310 0.690 32 H 0.240 0.760 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.654 1.714 -1.628 23.772 hybrid contribution 0.748 0.715 1.860 2.128 sum -22.906 2.430 0.231 23.035 Atomic orbital electron populations 1.20693 0.80497 1.06029 1.05649 1.24251 0.96319 0.82977 0.97397 1.84420 1.18791 1.35864 1.69316 1.28989 0.85850 0.90801 0.97996 1.70813 1.22090 1.12147 1.18114 1.21574 0.89598 0.95900 1.16421 1.16815 0.85201 0.83128 0.75995 1.90735 1.16353 1.83762 1.52556 1.45861 1.10247 1.06469 1.73375 1.21922 0.96322 0.78530 1.04175 1.21418 0.90010 0.96215 0.90302 0.89876 1.21998 1.02190 0.91827 1.04563 1.47889 1.10819 1.66421 1.08751 1.22021 1.01163 1.03259 0.80648 1.20100 0.82382 0.75957 0.89427 1.90690 1.74262 1.53784 1.25051 1.23363 0.98921 1.05096 1.00106 1.85540 1.05638 1.86717 1.13838 1.23212 1.00840 1.52175 0.93073 0.90194 1.26090 0.97062 0.94335 1.01503 1.70187 1.11857 1.44612 1.27990 0.84932 0.77959 0.78059 0.77164 1.18159 1.19955 1.19857 0.87686 0.87638 0.88029 0.68992 0.76003 0.89091 0.89257 0.89129 0.92562 0.89959 0.90425 0.91135 0.89006 0.88015 0.87661 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.88 71.24 0.70 -0.34 16 2 C 0.05 1.03 7.44 25.19 0.19 1.22 16 3 O -0.20 -3.88 10.73 0.39 0.00 -3.88 16 4 C 0.19 3.84 13.19 130.52 1.72 5.56 16 5 N -0.50 -14.27 11.06 -305.16 -3.37 -17.64 16 6 C -0.12 -3.16 6.99 40.41 0.28 -2.88 16 7 C 0.60 16.71 7.81 86.66 0.68 17.39 16 8 O -0.55 -15.74 14.80 -4.08 -0.06 -15.80 16 9 N -0.71 -18.83 5.38 -466.36 -2.51 -21.34 16 10 C 0.11 2.31 4.92 86.38 0.42 2.73 16 11 C 0.12 2.72 2.80 44.99 0.13 2.85 16 12 H 0.08 2.33 6.90 -2.39 -0.02 2.31 16 13 C -0.15 -2.24 9.19 71.98 0.66 -1.57 16 14 N -0.60 -15.57 2.24 -822.57 -1.85 -17.42 16 15 C 0.07 1.31 9.30 127.77 1.19 2.50 16 16 C 0.53 19.78 7.40 87.66 0.65 20.43 16 17 O -0.56 -25.59 15.19 -3.03 -0.05 -25.63 16 18 C -0.12 -4.99 4.71 71.24 0.34 -4.65 16 19 S -0.14 -8.03 20.57 -56.49 -1.16 -9.19 16 20 C -0.55 -31.13 9.50 67.96 0.65 -30.49 16 21 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 22 C 0.01 0.85 5.49 84.86 0.47 1.31 16 23 N -0.91 -55.68 13.22 21.65 0.29 -55.39 16 24 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.72 6.48 -2.39 -0.02 1.70 16 31 H 0.30 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.41 12.66 7.60 -92.71 -0.70 11.96 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.55 6.88 -2.38 -0.02 1.53 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.93 7.67 -2.39 -0.02 0.91 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.41 6.44 -2.39 -0.02 1.39 16 40 H 0.09 1.30 6.53 -2.39 -0.02 1.28 16 41 H 0.10 3.82 7.40 -2.40 -0.02 3.80 16 42 H 0.11 3.86 8.11 -2.39 -0.02 3.84 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -82.54 379.73 1.74 -80.80 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.35 Total: 25.91 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 8.07 Total: 14.06 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -7.44 Total: -111.79 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.10 Total: -45.31 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -82.54 1.74 -80.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285620713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.018 kcal (2) G-P(sol) polarization free energy of solvation -82.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds