Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35318 * 128.03976 * 2 1 4 4 O 1.34013 * 106.67050 * 180.25962 * 3 2 1 5 5 N 1.20905 * 111.83953 * 359.72964 * 4 3 2 6 6 C 1.30979 * 111.44647 * 359.97438 * 5 4 3 7 7 C 1.48329 * 126.94034 * 179.97438 * 6 5 4 8 8 O 1.21503 * 120.00051 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99999 * 359.75033 * 7 6 5 10 10 C 1.46504 * 119.99858 * 180.27206 * 9 7 6 11 11 C 1.53004 * 109.46932 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46561 * 65.00421 * 11 10 9 13 13 C 1.53002 * 109.47059 * 185.00121 * 11 10 9 14 14 N 1.46496 * 109.47304 * 305.00357 * 11 10 9 15 15 C 1.46497 * 119.99896 * 300.00081 * 14 11 10 16 16 C 1.34778 * 119.99821 * 119.99860 * 14 11 10 17 17 O 1.21279 * 119.99960 * 359.97438 * 16 14 11 18 18 C 1.50701 * 119.99772 * 180.02562 * 16 14 11 19 19 S 1.80995 * 109.47073 * 180.02562 * 18 16 14 20 20 C 1.76202 * 100.00005 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99906 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00077 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00087 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47166 * 59.99415 * 24 22 20 26 26 H 1.48494 * 109.47091 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46985 * 300.00114 * 24 22 20 28 28 H 1.08998 * 109.47310 * 270.17413 * 1 2 3 29 29 H 1.08999 * 109.47501 * 30.17119 * 1 2 3 30 30 H 1.08997 * 109.47625 * 150.17268 * 1 2 3 31 31 H 1.08001 * 126.66415 * 359.97438 * 3 2 1 32 32 H 0.96991 * 119.99719 * 0.28109 * 9 7 6 33 33 H 1.08998 * 109.47306 * 300.00567 * 10 9 7 34 34 H 1.08997 * 109.46860 * 60.00391 * 10 9 7 35 35 H 1.09002 * 109.46880 * 60.00027 * 13 11 10 36 36 H 1.08994 * 109.46896 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.46794 * 300.00301 * 13 11 10 38 38 H 1.09005 * 109.47530 * 90.00014 * 15 14 11 39 39 H 1.09005 * 109.47223 * 209.99927 * 15 14 11 40 40 H 1.09003 * 109.47368 * 329.99572 * 15 14 11 41 41 H 1.09002 * 109.47207 * 300.00206 * 18 16 14 42 42 H 1.09009 * 109.47091 * 59.99735 * 18 16 14 43 43 H 0.96999 * 120.00040 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5774 -0.0058 5 7 3.5988 -0.6316 -0.0039 6 6 2.3837 -1.1205 0.0038 7 6 1.9992 -2.5531 0.0078 8 8 0.8255 -2.8671 0.0146 9 7 2.9518 -3.5065 -0.0018 10 6 2.5720 -4.9214 -0.0039 11 6 3.8329 -5.7879 -0.0146 12 1 4.3841 -5.6387 0.9138 13 6 3.4386 -7.2607 -0.1425 14 7 4.6770 -5.4079 -1.1501 15 6 4.1600 -5.5184 -2.5163 16 6 5.9291 -4.9566 -0.9377 17 8 6.3568 -4.8647 0.1934 18 6 6.7971 -4.5652 -2.1058 19 16 8.4080 -4.0053 -1.4994 20 6 9.1941 -3.6216 -3.0290 21 1 8.6635 -3.7623 -3.9591 22 6 10.4957 -3.1396 -3.0385 23 7 11.1426 -2.9686 -1.9050 24 14 11.3294 -2.7335 -4.6601 25 1 10.5527 -1.6835 -5.3668 26 1 12.7053 -2.2396 -4.3992 27 1 11.3927 -3.9542 -5.5035 28 1 -0.3634 0.0031 1.0276 29 1 -0.3634 0.8884 -0.5165 30 1 -0.3634 -0.8915 -0.5111 31 1 2.0559 2.1075 -0.0004 32 1 3.8887 -3.2558 -0.0071 33 1 1.9874 -5.1421 0.8893 34 1 1.9756 -5.1361 -0.8906 35 1 2.8873 -7.4099 -1.0710 36 1 4.3369 -7.8780 -0.1497 37 1 2.8106 -7.5433 0.7023 38 1 3.6753 -4.5836 -2.7982 39 1 4.9834 -5.7216 -3.2011 40 1 3.4366 -6.3323 -2.5664 41 1 6.9348 -5.4256 -2.7606 42 1 6.3172 -3.7592 -2.6611 43 1 12.0523 -2.6321 -1.9117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285866270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -7.474337 kcal Electronic energy + Delta-G solvation = -27398.002048 eV Core-core repulsion = 23380.376449 eV Total energy + Delta-G solvation = -4017.625599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.28350 -40.26280 -39.34541 -36.61398 -34.91363 -34.44611 -32.73375 -32.43277 -31.89446 -28.78536 -28.47885 -27.09566 -26.86515 -25.49253 -24.26542 -21.93550 -21.73666 -20.76143 -19.30774 -18.44803 -17.95992 -17.75381 -16.99764 -16.72442 -16.43627 -15.63792 -15.51069 -15.13292 -14.80773 -14.69377 -14.19199 -14.01357 -13.57143 -13.52399 -13.43644 -13.25745 -13.17736 -13.01721 -12.61964 -12.59488 -12.39386 -12.31235 -12.05480 -11.85765 -11.56146 -11.15344 -11.04394 -11.04303 -10.77027 -10.51311 -10.44379 -9.82589 -9.68577 -9.48485 -9.31156 -9.06255 -8.67671 -8.24512 -6.50679 -6.21847 -3.92595 0.96293 1.42450 2.65998 2.84943 2.94242 2.95985 2.96792 3.23093 3.24643 3.28579 3.56221 3.74914 4.19728 4.32413 4.41601 4.60425 4.78465 4.81791 4.98905 5.00248 5.04782 5.13210 5.15131 5.27298 5.35052 5.36116 5.39524 5.40166 5.46415 5.54352 5.55055 5.67886 5.83556 5.86503 5.91641 5.96613 6.10246 6.12795 6.55123 7.15650 7.41144 7.58776 7.76284 7.91930 8.34423 8.44891 9.23319 10.85501 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.003293 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.932146 B = 8501.669929 C =10562.923762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.153 4.153 3 C -0.068 4.068 4 O 0.134 5.866 5 N -0.318 5.318 6 C -0.038 4.038 7 C 0.602 3.398 8 O -0.527 6.527 9 N -0.708 5.708 10 C 0.112 3.888 11 C 0.122 3.878 12 H 0.110 0.890 13 C -0.157 4.157 14 N -0.621 5.621 15 C 0.078 3.922 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.151 4.151 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.071 0.929 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.223 0.777 32 H 0.413 0.587 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.971 1.454 1.915 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C -0.149 4.149 4 O 0.056 5.944 5 N -0.016 5.016 6 C -0.197 4.197 7 C 0.386 3.614 8 O -0.402 6.402 9 N -0.360 5.360 10 C -0.013 4.013 11 C 0.018 3.982 12 H 0.128 0.872 13 C -0.215 4.215 14 N -0.358 5.358 15 C -0.065 4.065 16 C 0.321 3.679 17 O -0.388 6.388 18 C -0.301 4.301 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.240 0.760 32 H 0.249 0.751 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.796 0.745 3.680 22.117 hybrid contribution -0.285 0.537 -2.487 2.560 sum -22.081 1.282 1.193 22.150 Atomic orbital electron populations 1.20196 0.86605 1.03778 1.03108 1.21340 0.99032 0.90060 1.05396 1.25833 0.82489 1.01368 1.05211 1.84847 1.29346 1.15126 1.65121 1.74329 1.21334 0.91685 1.14239 1.23415 0.89730 0.96999 1.09581 1.16826 0.85407 0.82434 0.76728 1.90759 1.17342 1.81817 1.50331 1.45824 1.10497 1.06090 1.73582 1.21848 0.97027 0.79263 1.03115 1.21296 0.90640 0.94079 0.92187 0.87162 1.22049 1.02498 0.94406 1.02569 1.47962 1.14003 1.67054 1.06761 1.21761 1.00402 1.01560 0.82801 1.20444 0.80783 0.75803 0.90892 1.90706 1.71910 1.52094 1.24050 1.23562 1.03133 1.04158 0.99247 1.85391 1.02378 1.83622 1.11766 1.22812 1.01691 1.51034 0.92903 0.91040 1.24978 0.96198 0.94841 0.97464 1.70003 1.12026 1.42645 1.25558 0.86237 0.78330 0.78838 0.82177 1.19927 1.20788 1.19953 0.90632 0.91028 0.89582 0.76013 0.75076 0.90008 0.90718 0.91931 0.91249 0.91083 0.92921 0.90435 0.91071 0.89202 0.89305 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.15 -1.59 6.34 -104.12 -0.66 -2.25 16 3 C -0.07 -0.57 12.24 29.69 0.36 -0.20 16 4 O 0.13 1.60 11.18 17.25 0.19 1.79 16 5 N -0.32 -4.60 11.84 33.29 0.39 -4.21 16 6 C -0.04 -0.51 7.19 -82.53 -0.59 -1.11 16 7 C 0.60 8.40 7.85 -12.11 -0.10 8.31 16 8 O -0.53 -7.88 15.34 5.36 0.08 -7.79 16 9 N -0.71 -9.32 5.39 -61.09 -0.33 -9.65 16 10 C 0.11 1.19 4.97 -4.04 -0.02 1.17 16 11 C 0.12 1.38 2.80 -67.93 -0.19 1.19 16 12 H 0.11 1.48 6.90 -51.93 -0.36 1.12 16 13 C -0.16 -1.33 9.17 37.16 0.34 -0.99 16 14 N -0.62 -8.22 2.24 -173.93 -0.39 -8.61 16 15 C 0.08 0.81 9.40 59.85 0.56 1.37 16 16 C 0.53 9.72 7.40 -10.98 -0.08 9.64 16 17 O -0.51 -11.21 15.19 5.56 0.08 -11.13 16 18 C -0.15 -3.02 4.71 36.01 0.17 -2.86 16 19 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 20 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.84 6.89 -51.93 -0.36 0.48 16 31 H 0.22 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.41 6.16 7.63 -40.82 -0.31 5.84 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 35 H 0.06 0.45 6.66 -51.93 -0.35 0.10 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 40 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 41 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 42 H 0.09 1.69 8.11 -51.91 -0.42 1.27 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -36.12 380.25 -6.14 -42.26 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.76 Total: 3.34 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 0.35 Total: 1.07 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.41 Total: -47.87 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.36 Total: -17.13 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.12 -6.14 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285866270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.787 kcal (2) G-P(sol) polarization free energy of solvation -36.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds