Wall clock time and date at job start Sat Apr 11 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35318 * 128.03976 * 2 1 4 4 O 1.34013 * 106.67050 * 180.25962 * 3 2 1 5 5 N 1.20905 * 111.83953 * 359.72964 * 4 3 2 6 6 C 1.30979 * 111.44647 * 359.97438 * 5 4 3 7 7 C 1.48329 * 126.94034 * 179.97438 * 6 5 4 8 8 O 1.21503 * 120.00051 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99999 * 359.75033 * 7 6 5 10 10 C 1.46504 * 119.99858 * 180.27206 * 9 7 6 11 11 C 1.53004 * 109.46932 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46561 * 65.00421 * 11 10 9 13 13 C 1.53002 * 109.47059 * 185.00121 * 11 10 9 14 14 N 1.46496 * 109.47304 * 305.00357 * 11 10 9 15 15 C 1.46497 * 119.99896 * 300.00081 * 14 11 10 16 16 C 1.34778 * 119.99821 * 119.99860 * 14 11 10 17 17 O 1.21279 * 119.99960 * 359.97438 * 16 14 11 18 18 C 1.50701 * 119.99772 * 180.02562 * 16 14 11 19 19 S 1.80995 * 109.47073 * 180.02562 * 18 16 14 20 20 C 1.76202 * 100.00005 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99906 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00077 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00087 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47166 * 59.99415 * 24 22 20 26 26 H 1.48494 * 109.47091 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46985 * 300.00114 * 24 22 20 28 28 H 1.08998 * 109.47310 * 270.17413 * 1 2 3 29 29 H 1.08999 * 109.47501 * 30.17119 * 1 2 3 30 30 H 1.08997 * 109.47625 * 150.17268 * 1 2 3 31 31 H 1.08001 * 126.66415 * 359.97438 * 3 2 1 32 32 H 0.96991 * 119.99719 * 0.28109 * 9 7 6 33 33 H 1.08998 * 109.47306 * 300.00567 * 10 9 7 34 34 H 1.08997 * 109.46860 * 60.00391 * 10 9 7 35 35 H 1.09002 * 109.46880 * 60.00027 * 13 11 10 36 36 H 1.08994 * 109.46896 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.46794 * 300.00301 * 13 11 10 38 38 H 1.09005 * 109.47530 * 90.00014 * 15 14 11 39 39 H 1.09005 * 109.47223 * 209.99927 * 15 14 11 40 40 H 1.09003 * 109.47368 * 329.99572 * 15 14 11 41 41 H 1.09002 * 109.47207 * 300.00206 * 18 16 14 42 42 H 1.09009 * 109.47091 * 59.99735 * 18 16 14 43 43 H 0.96999 * 120.00040 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5774 -0.0058 5 7 3.5988 -0.6316 -0.0039 6 6 2.3837 -1.1205 0.0038 7 6 1.9992 -2.5531 0.0078 8 8 0.8255 -2.8671 0.0146 9 7 2.9518 -3.5065 -0.0018 10 6 2.5720 -4.9214 -0.0039 11 6 3.8329 -5.7879 -0.0146 12 1 4.3841 -5.6387 0.9138 13 6 3.4386 -7.2607 -0.1425 14 7 4.6770 -5.4079 -1.1501 15 6 4.1600 -5.5184 -2.5163 16 6 5.9291 -4.9566 -0.9377 17 8 6.3568 -4.8647 0.1934 18 6 6.7971 -4.5652 -2.1058 19 16 8.4080 -4.0053 -1.4994 20 6 9.1941 -3.6216 -3.0290 21 1 8.6635 -3.7623 -3.9591 22 6 10.4957 -3.1396 -3.0385 23 7 11.1426 -2.9686 -1.9050 24 14 11.3294 -2.7335 -4.6601 25 1 10.5527 -1.6835 -5.3668 26 1 12.7053 -2.2396 -4.3992 27 1 11.3927 -3.9542 -5.5035 28 1 -0.3634 0.0031 1.0276 29 1 -0.3634 0.8884 -0.5165 30 1 -0.3634 -0.8915 -0.5111 31 1 2.0559 2.1075 -0.0004 32 1 3.8887 -3.2558 -0.0071 33 1 1.9874 -5.1421 0.8893 34 1 1.9756 -5.1361 -0.8906 35 1 2.8873 -7.4099 -1.0710 36 1 4.3369 -7.8780 -0.1497 37 1 2.8106 -7.5433 0.7023 38 1 3.6753 -4.5836 -2.7982 39 1 4.9834 -5.7216 -3.2011 40 1 3.4366 -6.3323 -2.5664 41 1 6.9348 -5.4256 -2.7606 42 1 6.3172 -3.7592 -2.6611 43 1 12.0523 -2.6321 -1.9117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285866270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:04 Heat of formation + Delta-G solvation = -33.420810 kcal Electronic energy + Delta-G solvation = -27399.127171 eV Core-core repulsion = 23380.376449 eV Total energy + Delta-G solvation = -4018.750723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.19020 -41.42110 -40.53734 -37.81701 -35.74909 -35.54032 -34.59537 -33.68596 -32.90134 -30.26247 -29.20197 -27.97223 -27.83544 -27.66641 -25.18934 -22.94150 -22.69653 -21.70467 -20.53525 -19.65312 -19.35294 -18.89883 -18.37822 -17.68536 -17.49749 -16.89828 -16.85158 -16.71612 -16.37378 -15.87312 -15.62136 -14.85915 -14.66884 -14.64025 -14.54254 -14.24331 -14.14919 -14.02530 -13.91100 -13.57885 -13.34819 -13.22834 -13.15232 -13.12870 -12.89155 -12.86443 -12.61643 -12.38952 -12.00658 -11.73939 -11.48191 -11.44183 -11.13907 -10.94601 -10.44025 -10.34415 -10.28926 -9.81935 -8.67898 -8.35373 -6.13642 0.02216 0.68276 1.22821 1.42649 1.43288 1.49892 1.53398 1.73627 1.93589 2.04609 2.26280 2.27077 2.84127 2.98608 3.23496 3.45810 3.52574 3.74491 3.87221 4.00776 4.05539 4.13011 4.15817 4.23476 4.39357 4.42611 4.50437 4.57479 4.60362 4.75135 4.77415 4.80264 4.83362 4.94005 4.98574 5.07179 5.27329 5.33000 5.39942 5.51272 6.06266 6.16622 6.18904 6.73945 7.04071 7.05533 7.06675 8.73591 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.003293 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.932146 B = 8501.669929 C =10562.923762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.169 4.169 3 C -0.041 4.041 4 O 0.125 5.875 5 N -0.360 5.360 6 C -0.063 4.063 7 C 0.599 3.401 8 O -0.541 6.541 9 N -0.711 5.711 10 C 0.114 3.886 11 C 0.123 3.877 12 H 0.084 0.916 13 C -0.149 4.149 14 N -0.605 5.605 15 C 0.070 3.930 16 C 0.533 3.467 17 O -0.560 6.560 18 C -0.125 4.125 19 S -0.146 6.146 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.263 1.263 26 H -0.278 1.278 27 H -0.261 1.261 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.277 0.723 32 H 0.403 0.597 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.253 1.803 -0.081 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.175 4.175 3 C -0.121 4.121 4 O 0.048 5.952 5 N -0.059 5.059 6 C -0.221 4.221 7 C 0.383 3.617 8 O -0.418 6.418 9 N -0.361 5.361 10 C -0.009 4.009 11 C 0.020 3.980 12 H 0.102 0.898 13 C -0.207 4.207 14 N -0.339 5.339 15 C -0.072 4.072 16 C 0.320 3.680 17 O -0.438 6.438 18 C -0.276 4.276 19 S 0.081 5.919 20 C -0.696 4.696 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.186 1.186 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.292 0.708 32 H 0.238 0.762 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.135 1.056 1.664 24.216 hybrid contribution 0.261 0.443 -1.830 1.901 sum -23.874 1.499 -0.167 23.922 Atomic orbital electron populations 1.20227 0.84984 1.04296 1.03639 1.21739 1.00199 0.89500 1.06044 1.26795 0.80473 1.03025 1.01841 1.84790 1.31258 1.14370 1.64791 1.74337 1.22344 0.92864 1.16357 1.23673 0.90471 0.97540 1.10426 1.16989 0.85281 0.82930 0.76456 1.90735 1.17631 1.82175 1.51268 1.45963 1.09816 1.07084 1.73263 1.21979 0.96673 0.77840 1.04406 1.21438 0.90055 0.96288 0.90249 0.89801 1.22019 1.02554 0.91414 1.04704 1.47907 1.12305 1.64888 1.08844 1.22048 1.01232 1.03209 0.80743 1.20131 0.82226 0.76145 0.89467 1.90692 1.73319 1.54451 1.25299 1.23373 0.99203 1.04912 1.00085 1.85549 1.07802 1.84563 1.13992 1.23155 1.02299 1.51096 0.93044 0.90101 1.26111 0.96886 0.94346 1.01651 1.70172 1.12467 1.43695 1.28332 0.85026 0.77053 0.79122 0.76938 1.18735 1.20291 1.18585 0.90063 0.87855 0.91629 0.70788 0.76237 0.88868 0.89101 0.89711 0.92390 0.89007 0.92514 0.90311 0.87544 0.87348 0.88182 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.17 -3.29 6.34 -19.54 -0.12 -3.42 16 3 C -0.04 -0.59 12.24 67.15 0.82 0.23 16 4 O 0.13 2.95 11.18 71.91 0.80 3.76 16 5 N -0.36 -10.72 11.84 -49.52 -0.59 -11.30 16 6 C -0.06 -1.73 7.19 42.96 0.31 -1.42 16 7 C 0.60 16.87 7.85 86.93 0.68 17.55 16 8 O -0.54 -16.02 15.34 -3.73 -0.06 -16.08 16 9 N -0.71 -18.89 5.39 -465.49 -2.51 -21.40 16 10 C 0.11 2.30 4.97 86.38 0.43 2.73 16 11 C 0.12 2.67 2.80 44.99 0.13 2.80 16 12 H 0.08 2.32 6.90 -2.39 -0.02 2.31 16 13 C -0.15 -2.17 9.17 71.98 0.66 -1.51 16 14 N -0.60 -15.53 2.24 -822.58 -1.85 -17.37 16 15 C 0.07 1.27 9.40 127.77 1.20 2.47 16 16 C 0.53 19.81 7.40 87.66 0.65 20.46 16 17 O -0.56 -25.67 15.19 -3.03 -0.05 -25.71 16 18 C -0.12 -5.06 4.71 71.24 0.34 -4.72 16 19 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 20 C -0.55 -31.61 9.50 67.95 0.65 -30.96 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 22 C 0.01 0.86 5.49 84.86 0.47 1.32 16 23 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 24 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.22 6.89 -2.39 -0.02 1.21 16 31 H 0.28 0.52 8.06 -2.91 -0.02 0.49 16 32 H 0.40 12.54 7.63 -92.72 -0.71 11.83 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.57 7.84 -2.39 -0.02 1.56 16 35 H 0.08 0.88 6.66 -2.39 -0.02 0.86 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.08 1.46 6.44 -2.38 -0.02 1.45 16 40 H 0.11 1.24 6.43 -2.39 -0.02 1.22 16 41 H 0.11 3.96 7.40 -2.39 -0.02 3.94 16 42 H 0.10 3.81 8.11 -2.39 -0.02 3.79 16 43 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -83.96 380.25 4.17 -79.79 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.34 Total: 22.68 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.91 Total: 5.19 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -4.65 Total: -106.09 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: 0.70 Total: -38.04 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -83.96 4.17 -79.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285866270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.369 kcal (2) G-P(sol) polarization free energy of solvation -83.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds