Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35320 * 128.03992 * 2 1 4 4 O 1.34008 * 106.66726 * 180.22661 * 3 2 1 5 5 N 1.20900 * 111.84990 * 359.76136 * 4 3 2 6 6 C 1.30984 * 111.44200 * 359.97438 * 5 4 3 7 7 C 1.48334 * 126.94251 * 179.97438 * 6 5 4 8 8 O 1.21493 * 119.99954 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99855 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99909 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47459 * 35.00135 * 10 9 7 12 12 C 1.53006 * 109.46995 * 275.00159 * 10 9 7 13 13 C 1.52997 * 109.47194 * 155.00140 * 10 9 7 14 14 C 1.53003 * 109.46992 * 294.99585 * 13 10 9 15 15 N 1.46505 * 109.47014 * 179.97438 * 14 13 10 16 16 C 1.34778 * 119.99823 * 180.02562 * 15 14 13 17 17 O 1.21279 * 119.99700 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99814 * 179.97438 * 16 15 14 19 19 S 1.80997 * 109.46817 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99875 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99847 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00135 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00182 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47030 * 90.00045 * 24 22 20 26 26 H 1.48503 * 109.47364 * 209.99739 * 24 22 20 27 27 H 1.48503 * 109.47263 * 330.00060 * 24 22 20 28 28 H 1.09007 * 109.47242 * 270.14980 * 1 2 3 29 29 H 1.08995 * 109.47233 * 30.15018 * 1 2 3 30 30 H 1.09002 * 109.46955 * 150.15487 * 1 2 3 31 31 H 1.08003 * 126.66454 * 359.96196 * 3 2 1 32 32 H 0.97003 * 120.00265 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47002 * 299.99701 * 12 10 9 34 34 H 1.08993 * 109.46955 * 60.00138 * 12 10 9 35 35 H 1.09000 * 109.47050 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47223 * 54.99994 * 13 10 9 37 37 H 1.09006 * 109.47396 * 175.00204 * 13 10 9 38 38 H 1.09000 * 109.46966 * 300.00238 * 14 13 10 39 39 H 1.08998 * 109.46717 * 60.00358 * 14 13 10 40 40 H 0.97001 * 120.00131 * 0.02562 * 15 14 13 41 41 H 1.08993 * 109.47138 * 300.00435 * 18 16 15 42 42 H 1.09002 * 109.46820 * 60.00048 * 18 16 15 43 43 H 0.96995 * 120.00201 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5774 -0.0051 5 7 3.5988 -0.6316 -0.0034 6 6 2.3837 -1.1205 0.0035 7 6 1.9992 -2.5532 0.0070 8 8 0.8256 -2.8671 0.0130 9 7 2.9519 -3.5065 0.0035 10 6 2.5722 -4.9214 0.0064 11 1 1.6623 -5.0547 -0.5789 12 6 2.3250 -5.3802 1.4450 13 6 3.6999 -5.7533 -0.6076 14 6 3.8632 -5.3812 -2.0826 15 7 4.9435 -6.1774 -2.6704 16 6 5.2686 -6.0178 -3.9686 17 8 4.6672 -5.2148 -4.6500 18 6 6.3802 -6.8364 -4.5731 19 16 6.5733 -6.3962 -6.3180 20 6 7.8976 -7.4713 -6.7600 21 1 8.3257 -8.1326 -6.0213 22 6 8.3905 -7.4682 -8.0575 23 7 7.8683 -6.6626 -8.9580 24 14 9.7948 -8.6074 -8.5259 25 1 9.2444 -9.9016 -9.0028 26 1 10.5992 -7.9832 -9.6069 27 1 10.6574 -8.8433 -7.3403 28 1 -0.3634 0.0027 1.0277 29 1 -0.3633 0.8886 -0.5161 30 1 -0.3633 -0.8914 -0.5114 31 1 2.0559 2.1075 -0.0006 32 1 3.8889 -3.2559 -0.0009 33 1 3.2348 -5.2470 2.0302 34 1 1.5216 -4.7875 1.8823 35 1 2.0420 -6.4328 1.4471 36 1 4.6304 -5.5520 -0.0768 37 1 3.4564 -6.8127 -0.5250 38 1 2.9327 -5.5826 -2.6134 39 1 4.1068 -4.3220 -2.1652 40 1 5.4247 -6.8194 -2.1253 41 1 7.3103 -6.6345 -4.0419 42 1 6.1374 -7.8958 -4.4907 43 1 8.2125 -6.6607 -9.8648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295825833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = -53.061441 kcal Electronic energy + Delta-G solvation = -26033.000487 eV Core-core repulsion = 22013.398083 eV Total energy + Delta-G solvation = -4019.602404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.15991 -41.09600 -40.56387 -37.86684 -35.77376 -35.64957 -34.59429 -33.79841 -32.50212 -31.31815 -29.27302 -29.12206 -27.66537 -26.12219 -24.36023 -22.72427 -22.42054 -21.80553 -21.56008 -19.88365 -19.38584 -18.86071 -17.85788 -17.80916 -17.36994 -17.18965 -16.88722 -16.68033 -16.11087 -15.78442 -15.61024 -15.33831 -14.86107 -14.75723 -14.48916 -14.47277 -14.25402 -14.13771 -13.69534 -13.59093 -13.36693 -13.17708 -13.06162 -12.89909 -12.67123 -12.50009 -12.47251 -12.41239 -12.01509 -11.73558 -11.41854 -11.38781 -11.15146 -11.01136 -10.42647 -10.34065 -10.28688 -10.15180 -8.68666 -8.35451 -6.14145 0.02887 0.68762 1.25776 1.42236 1.46355 1.56820 1.57699 1.77826 1.97948 2.22586 2.24852 2.27286 2.84450 2.98680 3.30294 3.51838 3.67266 3.73955 3.88649 3.97244 4.03193 4.06717 4.28286 4.35121 4.38773 4.43383 4.49417 4.55000 4.72332 4.75799 4.79653 4.81893 4.91060 4.94895 5.04656 5.24717 5.29345 5.36355 5.38227 5.41066 6.19051 6.19204 6.48533 6.84508 7.01771 7.05643 7.22277 8.73864 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.001908 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.891131 B =14674.588228 C =15718.297987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.177 4.177 3 C -0.037 4.037 4 O 0.126 5.874 5 N -0.350 5.350 6 C -0.059 4.059 7 C 0.596 3.404 8 O -0.547 6.547 9 N -0.704 5.704 10 C 0.143 3.857 11 H 0.078 0.922 12 C -0.154 4.154 13 C -0.123 4.123 14 C 0.120 3.880 15 N -0.710 5.710 16 C 0.530 3.470 17 O -0.570 6.570 18 C -0.128 4.128 19 S -0.157 6.157 20 C -0.545 4.545 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.257 1.257 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.275 0.725 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.420 0.580 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.280 9.882 27.818 31.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.182 4.182 3 C -0.117 4.117 4 O 0.049 5.951 5 N -0.050 5.050 6 C -0.217 4.217 7 C 0.381 3.619 8 O -0.424 6.424 9 N -0.356 5.356 10 C 0.040 3.960 11 H 0.097 0.903 12 C -0.213 4.213 13 C -0.161 4.161 14 C -0.004 4.004 15 N -0.364 5.364 16 C 0.316 3.684 17 O -0.448 6.448 18 C -0.279 4.279 19 S 0.070 5.930 20 C -0.693 4.693 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.822 3.178 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.181 1.181 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.290 0.710 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.258 0.742 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.923 10.366 26.547 30.893 hybrid contribution 1.123 -1.242 0.142 1.680 sum -10.800 9.124 26.689 30.203 Atomic orbital electron populations 1.20213 0.85649 1.03999 1.03581 1.21730 1.00064 0.90110 1.06290 1.26692 0.80474 1.02814 1.01710 1.84741 1.30897 1.14471 1.64957 1.74166 1.21712 0.92704 1.16420 1.23624 0.90617 0.97362 1.10092 1.17070 0.85505 0.83132 0.76231 1.90756 1.18388 1.82187 1.51039 1.46043 1.09841 1.06454 1.73277 1.21080 0.98427 0.78193 0.98348 0.90342 1.22103 1.02335 1.02671 0.94147 1.22068 0.99828 1.02301 0.91867 1.21353 0.89598 0.94913 0.94564 1.45681 1.37704 1.43478 1.09561 1.20159 0.83457 0.82243 0.82517 1.90701 1.54303 1.37755 1.62066 1.23363 1.00485 1.03546 1.00510 1.85643 1.47261 1.55755 1.04364 1.23202 1.20536 1.25956 0.99561 0.89736 1.26168 1.00325 0.97679 0.95186 1.70188 1.42599 1.37989 1.04087 0.84927 0.77000 0.77568 0.78312 1.19288 1.20361 1.18058 0.89914 0.88203 0.92130 0.70998 0.75237 0.90957 0.93644 0.89175 0.88106 0.86497 0.93137 0.93413 0.74235 0.86988 0.86933 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.01 71.24 0.71 -0.31 16 2 C -0.18 -2.86 6.34 -19.53 -0.12 -2.98 16 3 C -0.04 -0.36 12.24 67.15 0.82 0.46 16 4 O 0.13 2.02 11.18 71.96 0.80 2.83 16 5 N -0.35 -7.37 11.84 -49.51 -0.59 -7.95 16 6 C -0.06 -1.29 7.19 42.96 0.31 -0.98 16 7 C 0.60 14.10 7.81 86.93 0.68 14.78 16 8 O -0.55 -15.34 15.00 -3.69 -0.06 -15.40 16 9 N -0.70 -13.05 4.53 -444.95 -2.01 -15.07 16 10 C 0.14 2.17 2.57 44.99 0.12 2.29 16 11 H 0.08 1.51 7.58 -2.39 -0.02 1.49 16 12 C -0.15 -1.81 9.48 71.98 0.68 -1.12 16 13 C -0.12 -1.44 4.87 30.59 0.15 -1.29 16 14 C 0.12 2.63 5.56 86.38 0.48 3.11 16 15 N -0.71 -17.11 5.56 -463.05 -2.57 -19.68 16 16 C 0.53 19.73 7.85 87.66 0.69 20.41 16 17 O -0.57 -27.33 15.86 -3.03 -0.05 -27.38 16 18 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 19 S -0.16 -8.84 20.57 -56.49 -1.16 -10.00 16 20 C -0.54 -31.18 9.50 67.95 0.65 -30.53 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.63 5.49 84.86 0.47 1.10 16 23 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 24 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 28 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 1.14 6.89 -2.39 -0.02 1.13 16 31 H 0.27 -0.51 8.06 -2.91 -0.02 -0.53 16 32 H 0.41 6.87 8.36 -92.71 -0.78 6.10 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.25 7.75 -2.39 -0.02 1.23 16 40 H 0.42 6.59 8.47 -92.71 -0.79 5.80 16 41 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 42 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -87.60 388.37 2.24 -85.36 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -0.50 Total: 17.49 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 6.07 Total: 0.35 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.89 Total: -98.92 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: 0.70 Total: -39.95 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -87.60 2.24 -85.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295825833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.303 kcal (2) G-P(sol) polarization free energy of solvation -87.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds