Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41265 * 128.07817 * 2 1 4 4 N 1.30126 * 106.59105 * 179.97438 * 3 2 1 5 5 O 1.20893 * 111.98215 * 359.97438 * 4 3 2 6 6 C 1.34634 * 111.46584 * 0.02562 * 5 4 3 7 7 C 1.47518 * 126.94258 * 179.97438 * 6 5 4 8 8 O 1.21585 * 119.99995 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99761 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99873 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47079 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47209 * 55.00120 * 11 10 9 13 13 C 1.53003 * 109.47357 * 295.00505 * 11 10 9 14 14 C 1.53002 * 109.47168 * 175.00296 * 11 10 9 15 15 N 1.46499 * 109.47151 * 185.00313 * 14 11 10 16 16 C 1.34775 * 119.99681 * 179.97438 * 15 14 11 17 17 O 1.21282 * 120.00188 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99585 * 179.97438 * 16 15 14 19 19 S 1.81005 * 109.46748 * 180.02562 * 18 16 15 20 20 C 1.76209 * 99.99827 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99878 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00007 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00194 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99940 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47366 * 90.00419 * 24 22 20 26 26 H 1.48507 * 109.46993 * 210.00279 * 24 22 20 27 27 H 1.48503 * 109.47417 * 330.00179 * 24 22 20 28 28 H 1.08994 * 109.47168 * 89.97425 * 1 2 3 29 29 H 1.08998 * 109.47306 * 209.97906 * 1 2 3 30 30 H 1.09000 * 109.46824 * 329.97866 * 1 2 3 31 31 H 1.08001 * 126.70425 * 359.93981 * 3 2 1 32 32 H 0.97002 * 120.00355 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.47138 * 300.00365 * 10 9 7 34 34 H 1.09000 * 109.46542 * 60.00604 * 10 9 7 35 35 H 1.09003 * 109.47006 * 180.02562 * 13 11 10 36 36 H 1.09002 * 109.46647 * 299.99959 * 13 11 10 37 37 H 1.08994 * 109.47008 * 59.99942 * 13 11 10 38 38 H 1.09002 * 109.46681 * 305.00303 * 14 11 10 39 39 H 1.08997 * 109.46936 * 64.99926 * 14 11 10 40 40 H 0.97001 * 120.00367 * 359.97438 * 15 14 11 41 41 H 1.08996 * 109.47344 * 299.99761 * 18 16 15 42 42 H 1.08997 * 109.47235 * 60.00447 * 18 16 15 43 43 H 0.97000 * 120.00200 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6354 0.0006 5 8 3.5995 -0.5735 0.0014 6 6 2.3508 -1.0770 0.0009 7 6 1.9695 -2.5021 0.0012 8 8 0.7952 -2.8171 0.0002 9 7 2.9228 -3.4547 0.0024 10 6 2.5441 -4.8700 0.0032 11 6 3.8057 -5.7355 0.0052 12 1 4.4380 -5.4543 0.8474 13 6 4.5726 -5.5223 -1.3015 14 6 3.4132 -7.2089 0.1316 15 7 4.6220 -8.0275 0.2537 16 6 4.5199 -9.3656 0.3783 17 8 3.4273 -9.8919 0.3898 18 6 5.7634 -10.2078 0.5032 19 16 5.2989 -11.9508 0.6530 20 6 6.8965 -12.6832 0.7809 21 1 7.7793 -12.0615 0.7540 22 6 7.0204 -14.0589 0.9164 23 7 8.2138 -14.6060 1.0125 24 14 5.4935 -15.1340 0.9638 25 1 5.1391 -15.5517 -0.4165 26 1 5.7610 -16.3375 1.7917 27 1 4.3666 -14.3678 1.5538 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3634 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 2.0947 2.1541 -0.0009 32 1 3.8597 -3.2034 0.0035 33 1 1.9533 -5.0875 0.8929 34 1 1.9545 -5.0887 -0.8871 35 1 5.4712 -6.1393 -1.3003 36 1 3.9404 -5.8035 -2.1438 37 1 4.8522 -4.4727 -1.3916 38 1 2.7916 -7.3445 1.0167 39 1 2.8558 -7.5137 -0.7541 40 1 5.4959 -7.6066 0.2448 41 1 6.3844 -10.0724 -0.3822 42 1 6.3213 -9.9027 1.3885 43 1 8.3003 -15.5675 1.1075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297719952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -23.268089 kcal Electronic energy + Delta-G solvation = -25603.418591 eV Core-core repulsion = 21585.108123 eV Total energy + Delta-G solvation = -4018.310468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.58140 -40.32708 -39.41003 -37.32488 -35.43576 -34.68398 -33.10043 -32.45515 -32.31081 -29.60104 -29.00123 -27.35246 -25.97770 -25.54549 -24.15619 -22.72706 -21.30104 -20.91722 -20.53147 -19.12239 -18.34451 -17.85758 -16.97570 -16.51606 -16.24559 -16.14769 -15.77244 -15.44822 -15.10268 -14.94890 -14.67582 -14.22062 -13.93179 -13.79984 -13.77929 -13.69492 -13.30422 -13.21087 -13.10718 -13.05412 -12.79948 -12.09269 -11.84511 -11.70143 -11.50906 -11.34743 -11.27685 -11.01717 -10.95543 -10.83821 -10.61649 -10.09328 -9.87078 -9.66913 -9.57580 -9.05635 -8.99545 -8.51743 -6.93384 -6.30122 -4.02139 0.22643 1.50219 2.01298 2.42677 2.59291 2.78480 2.94035 3.29503 3.33409 3.49847 3.59151 3.63167 3.99376 4.13423 4.30814 4.32208 4.34876 4.40427 4.44118 4.72481 4.74079 4.92929 5.08649 5.09032 5.14339 5.14381 5.21171 5.24623 5.29996 5.40776 5.43263 5.56482 5.61730 5.71851 5.74416 5.78106 5.86266 5.98655 6.45395 6.71140 7.36518 7.51946 7.54520 7.92822 8.40133 8.44774 9.16097 10.79059 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.037632 B = 0.001520 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.868840 B =18416.301438 C =18986.157816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.116 4.116 3 C -0.015 4.015 4 N -0.340 5.340 5 O 0.116 5.884 6 C -0.097 4.097 7 C 0.607 3.393 8 O -0.507 6.507 9 N -0.712 5.712 10 C 0.125 3.875 11 C -0.116 4.116 12 H 0.088 0.912 13 C -0.153 4.153 14 C 0.129 3.871 15 N -0.736 5.736 16 C 0.531 3.469 17 O -0.518 6.518 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.200 0.800 32 H 0.408 0.592 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.262 32.792 -3.040 34.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.193 4.193 4 N -0.039 5.039 5 O 0.042 5.958 6 C -0.163 4.163 7 C 0.390 3.610 8 O -0.382 6.382 9 N -0.364 5.364 10 C 0.002 3.998 11 C -0.135 4.135 12 H 0.106 0.894 13 C -0.210 4.210 14 C 0.004 3.996 15 N -0.391 5.391 16 C 0.316 3.684 17 O -0.392 6.392 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.217 0.783 32 H 0.244 0.756 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.629 32.056 -3.001 34.584 hybrid contribution 1.136 0.363 -0.006 1.192 sum -11.493 32.419 -3.007 34.527 Atomic orbital electron populations 1.20363 0.86166 1.04354 1.03633 1.21692 0.99157 0.90263 1.00941 1.25054 0.87647 1.02259 1.04301 1.73782 1.23117 0.91116 1.15855 1.84960 1.28093 1.15599 1.67100 1.23991 0.84812 0.96182 1.11318 1.16438 0.85670 0.81462 0.77392 1.90880 1.17126 1.80536 1.49680 1.45858 1.09862 1.06507 1.74202 1.21434 0.96649 0.77952 1.03767 1.21612 0.96897 0.94855 1.00173 0.89394 1.21922 1.00777 1.01815 0.96494 1.21167 0.87935 0.87679 1.02795 1.45919 1.09310 1.06756 1.77105 1.20279 0.91061 0.81688 0.75325 1.90710 1.28555 1.72017 1.47967 1.23278 0.98147 1.00356 1.05711 1.84808 1.14022 0.96402 1.96315 1.22318 0.90835 0.95644 1.58185 0.89388 1.24709 0.96332 0.97055 0.93168 1.69937 1.22160 1.12026 1.47545 0.86737 0.84248 0.81224 0.79650 1.19202 1.19929 1.15918 0.89969 0.89045 0.90585 0.78350 0.75624 0.90191 0.90149 0.91669 0.91805 0.92361 0.91105 0.91029 0.76619 0.88493 0.88447 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 9.96 36.00 0.36 -0.09 16 2 C -0.12 -0.77 6.37 -103.99 -0.66 -1.43 16 3 C -0.01 -0.09 12.14 -17.12 -0.21 -0.30 16 4 N -0.34 -2.75 12.04 30.46 0.37 -2.38 16 5 O 0.12 0.88 11.04 15.57 0.17 1.05 16 6 C -0.10 -0.72 7.29 -36.31 -0.26 -0.99 16 7 C 0.61 4.83 7.82 -12.48 -0.10 4.73 16 8 O -0.51 -5.39 15.11 5.29 0.08 -5.31 16 9 N -0.71 -4.07 5.28 -61.36 -0.32 -4.40 16 10 C 0.13 0.76 5.06 -4.04 -0.02 0.73 16 11 C -0.12 -0.64 2.46 -90.62 -0.22 -0.87 16 12 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 13 C -0.15 -0.79 8.94 37.16 0.33 -0.46 16 14 C 0.13 1.18 5.06 -4.04 -0.02 1.16 16 15 N -0.74 -8.16 5.28 -60.29 -0.32 -8.48 16 16 C 0.53 8.88 7.85 -10.98 -0.09 8.80 16 17 O -0.52 -10.79 15.86 5.56 0.09 -10.71 16 18 C -0.12 -2.31 6.16 36.01 0.22 -2.08 16 19 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 20 C -0.52 -14.89 10.04 30.94 0.31 -14.57 16 21 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.36 13.97 55.49 0.78 -25.59 16 24 Si 0.86 21.63 27.74 -169.99 -4.71 16.91 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.60 6.73 -51.93 -0.35 0.25 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.20 0.53 8.06 -52.49 -0.42 0.10 16 32 H 0.41 1.56 7.48 -40.82 -0.31 1.25 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.35 7.18 -51.93 -0.37 -0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.23 7.18 -51.93 -0.37 -0.14 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.40 3.28 7.65 -40.82 -0.31 2.96 16 41 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -36.13 382.53 -6.50 -42.63 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.94 Total: -1.29 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.46 Total: -2.68 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.50 Total: -40.84 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.34 Total: -14.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.13 -6.50 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297719952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.361 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds