Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35323 * 126.66631 * 2 1 4 4 C 1.42269 * 103.92092 * 179.97438 * 3 2 1 5 5 C 1.48328 * 126.93658 * 179.97438 * 4 3 2 6 6 O 1.21498 * 119.99980 * 353.35381 * 5 4 3 7 7 N 1.34779 * 120.00203 * 173.63750 * 5 4 3 8 8 C 1.46496 * 119.99817 * 3.44895 * 7 5 4 9 9 C 1.46502 * 119.99907 * 183.44646 * 7 5 4 10 10 C 1.53006 * 109.46692 * 90.00094 * 9 7 5 11 11 N 1.46497 * 109.46725 * 179.97438 * 10 9 7 12 12 C 1.46500 * 120.00140 * 269.99824 * 11 10 9 13 13 C 1.34775 * 119.99975 * 90.00213 * 11 10 9 14 14 O 1.21276 * 120.00255 * 359.97438 * 13 11 10 15 15 C 1.50707 * 120.00243 * 179.97438 * 13 11 10 16 16 S 1.80996 * 109.47130 * 179.97438 * 15 13 11 17 17 C 1.76203 * 99.99984 * 179.97438 * 16 15 13 18 18 H 1.08008 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00133 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99872 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00010 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47241 * 89.99998 * 21 19 17 23 23 H 1.48505 * 109.46851 * 210.00161 * 21 19 17 24 24 H 1.48496 * 109.46958 * 329.99734 * 21 19 17 25 25 N 1.30989 * 106.12449 * 0.22698 * 4 3 2 26 26 O 1.20899 * 111.43941 * 359.59954 * 25 4 3 27 27 H 1.08999 * 109.47190 * 90.00053 * 1 2 3 28 28 H 1.09002 * 109.47229 * 209.99828 * 1 2 3 29 29 H 1.09000 * 109.47203 * 329.99570 * 1 2 3 30 30 H 1.07998 * 128.03520 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.47268 * 84.07480 * 8 7 5 32 32 H 1.08997 * 109.47447 * 204.07267 * 8 7 5 33 33 H 1.08998 * 109.47315 * 324.07091 * 8 7 5 34 34 H 1.09002 * 109.46929 * 209.99315 * 9 7 5 35 35 H 1.08997 * 109.47449 * 329.99864 * 9 7 5 36 36 H 1.08997 * 109.46854 * 299.99772 * 10 9 7 37 37 H 1.09006 * 109.47173 * 60.00295 * 10 9 7 38 38 H 1.09007 * 109.47174 * 90.00271 * 12 11 10 39 39 H 1.09004 * 109.47307 * 209.99737 * 12 11 10 40 40 H 1.09001 * 109.47380 * 330.00298 * 12 11 10 41 41 H 1.09005 * 109.46939 * 299.99922 * 15 13 11 42 42 H 1.09001 * 109.46843 * 59.99688 * 15 13 11 43 43 H 0.96999 * 120.00087 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5354 0.0006 5 6 4.9075 1.2842 0.0003 6 8 4.9043 2.4929 -0.1223 7 7 6.0748 0.6231 0.1304 8 6 6.0844 -0.8404 0.1960 9 6 7.3340 1.3681 0.2060 10 6 7.6484 1.6909 1.6682 11 7 8.9079 2.4353 1.7439 12 6 10.1764 1.7163 1.8854 13 6 8.8996 3.7817 1.6834 14 8 7.8495 4.3770 1.5659 15 6 10.1951 4.5476 1.7619 16 16 9.8547 6.3219 1.6528 17 6 11.4947 6.9558 1.7679 18 1 12.3295 6.2783 1.8708 19 6 11.7138 8.3257 1.7254 20 7 12.9390 8.7992 1.8108 21 14 10.2700 9.4974 1.5467 22 1 9.7659 9.8707 2.8927 23 1 10.7103 10.7193 0.8266 24 1 9.1861 8.8338 0.7787 25 7 3.4761 -0.7657 -0.0041 26 8 2.3073 -1.0750 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 2.0301 2.1272 -0.0004 31 1 6.0689 -1.2495 -0.8142 32 1 6.9855 -1.1752 0.7097 33 1 5.2060 -1.1854 0.7412 34 1 8.1389 0.7647 -0.2140 35 1 7.2421 2.2955 -0.3593 36 1 6.8436 2.2942 2.0882 37 1 7.7404 0.7634 2.2335 38 1 10.5794 1.4926 0.8976 39 1 10.8855 2.3351 2.4354 40 1 10.0083 0.7863 2.4284 41 1 10.6893 4.3296 2.7087 42 1 10.8431 4.2509 0.9371 43 1 13.0923 9.7565 1.7807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298033368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = 13.180421 kcal Electronic energy + Delta-G solvation = -26640.260789 eV Core-core repulsion = 22623.530847 eV Total energy + Delta-G solvation = -4016.729942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.46653 -40.23803 -39.36305 -36.34880 -35.25492 -34.54334 -33.75361 -32.41563 -31.07545 -28.77706 -28.29701 -27.12267 -26.71193 -25.61993 -24.95123 -23.27728 -22.43950 -19.58637 -19.29932 -18.25797 -17.76333 -17.67542 -17.18438 -16.84822 -16.43119 -16.01264 -15.43383 -15.11988 -14.90847 -14.61465 -14.18258 -13.96967 -13.79061 -13.72618 -13.58802 -13.42084 -13.35629 -13.16488 -12.98592 -12.76653 -12.61461 -12.58424 -12.33730 -11.97890 -11.56521 -11.24492 -11.12596 -10.97943 -10.82625 -10.57071 -10.47904 -9.84676 -9.82974 -9.46985 -9.27807 -8.97784 -8.52523 -8.45095 -6.89051 -6.26785 -3.98172 0.72529 1.28667 2.29596 2.55873 2.80015 2.84582 2.97914 3.25174 3.36051 3.52542 3.54608 3.63535 4.00399 4.35917 4.49729 4.55564 4.63780 4.73440 4.78962 4.82719 4.87076 4.90214 5.00543 5.08947 5.12333 5.14726 5.21637 5.24985 5.28576 5.38116 5.50366 5.53579 5.61406 5.69110 5.79018 5.83941 6.02175 6.10008 6.54693 6.89991 7.41816 7.54868 7.79464 7.96221 8.43113 8.46299 9.19688 10.82324 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.002177 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.757503 B =12856.679485 C =14092.424671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.031 4.031 3 C -0.184 4.184 4 C -0.017 4.017 5 C 0.590 3.410 6 O -0.500 6.500 7 N -0.602 5.602 8 C 0.072 3.928 9 C 0.100 3.900 10 C 0.106 3.894 11 N -0.623 5.623 12 C 0.079 3.921 13 C 0.528 3.472 14 O -0.505 6.505 15 C -0.120 4.120 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 N -0.331 5.331 26 O 0.113 5.887 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.182 0.818 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.391 -26.230 -2.788 33.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 C -0.206 4.206 4 C -0.175 4.175 5 C 0.374 3.626 6 O -0.372 6.372 7 N -0.336 5.336 8 C -0.071 4.071 9 C -0.023 4.023 10 C -0.018 4.018 11 N -0.360 5.360 12 C -0.064 4.064 13 C 0.315 3.685 14 O -0.378 6.378 15 C -0.270 4.270 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 N -0.035 5.035 26 O 0.040 5.960 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.199 0.801 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.900 -25.503 -3.034 33.112 hybrid contribution 0.762 0.513 0.100 0.924 sum -20.139 -24.990 -2.933 32.229 Atomic orbital electron populations 1.20394 0.83327 1.05024 1.04452 1.24501 0.96545 0.85333 1.03003 1.22492 0.89670 1.01752 1.06727 1.23492 0.96743 0.90115 1.07189 1.17033 0.81557 0.86306 0.77665 1.90924 1.85963 1.12564 1.47747 1.47610 1.06005 1.07711 1.72320 1.22136 1.03911 0.78400 1.02612 1.21991 0.83868 0.98172 0.98283 1.21688 0.87577 0.96482 0.96085 1.47762 1.06980 1.05937 1.75313 1.21835 0.85539 0.97320 1.01749 1.20395 0.91252 0.81303 0.75565 1.90752 1.32831 1.67648 1.46566 1.23311 0.97337 1.00855 1.05532 1.84860 1.14195 0.96035 1.96533 1.22312 0.90732 0.95681 1.58074 0.89411 1.24708 0.95956 0.97415 0.93227 1.69939 1.19657 1.14114 1.48018 0.86740 0.83692 0.81380 0.80105 1.19216 1.19952 1.15852 1.74301 0.96871 1.15410 1.16936 1.84774 1.11393 1.33681 1.66159 0.89092 0.89543 0.88640 0.80099 0.92208 0.90701 0.89292 0.89908 0.88663 0.89484 0.90701 0.92563 0.90340 0.91300 0.88529 0.88485 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.44 36.00 0.38 0.20 16 2 C -0.03 -0.21 7.47 -35.35 -0.26 -0.47 16 3 C -0.18 -1.69 10.93 -39.07 -0.43 -2.12 16 4 C -0.02 -0.19 6.86 -82.53 -0.57 -0.76 16 5 C 0.59 8.18 7.70 -12.11 -0.09 8.09 16 6 O -0.50 -9.00 16.52 5.37 0.09 -8.91 16 7 N -0.60 -6.88 2.87 -182.51 -0.52 -7.40 16 8 C 0.07 0.57 9.64 59.84 0.58 1.15 16 9 C 0.10 1.20 5.73 -4.04 -0.02 1.18 16 10 C 0.11 1.32 5.77 -4.04 -0.02 1.30 16 11 N -0.62 -8.60 2.87 -181.56 -0.52 -9.12 16 12 C 0.08 0.76 10.29 59.85 0.62 1.37 16 13 C 0.53 9.96 7.69 -10.98 -0.08 9.88 16 14 O -0.51 -11.69 15.44 5.56 0.09 -11.60 16 15 C -0.12 -2.39 4.71 36.01 0.17 -2.22 16 16 S -0.14 -3.72 18.55 -107.50 -1.99 -5.72 16 17 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 18 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 19 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 20 N -0.88 -26.82 13.97 55.49 0.78 -26.05 16 21 Si 0.86 22.25 27.74 -169.99 -4.72 17.53 16 22 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.23 -6.14 6.74 56.52 0.38 -5.75 16 25 N -0.33 -3.27 8.72 33.29 0.29 -2.98 16 26 O 0.11 0.92 11.18 17.24 0.19 1.12 16 27 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.43 8.03 -51.93 -0.42 0.01 16 33 H 0.09 0.74 5.40 -51.93 -0.28 0.46 16 34 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.10 1.50 7.37 -51.93 -0.38 1.12 16 36 H 0.09 1.37 7.42 -51.93 -0.39 0.99 16 37 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 40 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 41 H 0.10 1.78 7.40 -51.91 -0.38 1.40 16 42 H 0.10 1.80 8.11 -51.91 -0.42 1.38 16 43 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -38.23 380.72 -6.07 -44.30 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.96 Total: -2.37 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 0.47 Total: 5.46 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.02 Total: -45.54 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.37 Total: -19.40 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.72 Total: 17.53 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.23 -6.07 -44.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298033368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.483 kcal (2) G-P(sol) polarization free energy of solvation -38.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds