Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35323 * 126.66631 * 2 1 4 4 C 1.42269 * 103.92092 * 179.97438 * 3 2 1 5 5 C 1.48328 * 126.93658 * 179.97438 * 4 3 2 6 6 O 1.21498 * 119.99980 * 353.35381 * 5 4 3 7 7 N 1.34779 * 120.00203 * 173.63750 * 5 4 3 8 8 C 1.46496 * 119.99817 * 3.44895 * 7 5 4 9 9 C 1.46502 * 119.99907 * 183.44646 * 7 5 4 10 10 C 1.53006 * 109.46692 * 90.00094 * 9 7 5 11 11 N 1.46497 * 109.46725 * 179.97438 * 10 9 7 12 12 C 1.46500 * 120.00140 * 269.99824 * 11 10 9 13 13 C 1.34775 * 119.99975 * 90.00213 * 11 10 9 14 14 O 1.21276 * 120.00255 * 359.97438 * 13 11 10 15 15 C 1.50707 * 120.00243 * 179.97438 * 13 11 10 16 16 S 1.80996 * 109.47130 * 179.97438 * 15 13 11 17 17 C 1.76203 * 99.99984 * 179.97438 * 16 15 13 18 18 H 1.08008 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00133 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99872 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00010 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47241 * 89.99998 * 21 19 17 23 23 H 1.48505 * 109.46851 * 210.00161 * 21 19 17 24 24 H 1.48496 * 109.46958 * 329.99734 * 21 19 17 25 25 N 1.30989 * 106.12449 * 0.22698 * 4 3 2 26 26 O 1.20899 * 111.43941 * 359.59954 * 25 4 3 27 27 H 1.08999 * 109.47190 * 90.00053 * 1 2 3 28 28 H 1.09002 * 109.47229 * 209.99828 * 1 2 3 29 29 H 1.09000 * 109.47203 * 329.99570 * 1 2 3 30 30 H 1.07998 * 128.03520 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.47268 * 84.07480 * 8 7 5 32 32 H 1.08997 * 109.47447 * 204.07267 * 8 7 5 33 33 H 1.08998 * 109.47315 * 324.07091 * 8 7 5 34 34 H 1.09002 * 109.46929 * 209.99315 * 9 7 5 35 35 H 1.08997 * 109.47449 * 329.99864 * 9 7 5 36 36 H 1.08997 * 109.46854 * 299.99772 * 10 9 7 37 37 H 1.09006 * 109.47173 * 60.00295 * 10 9 7 38 38 H 1.09007 * 109.47174 * 90.00271 * 12 11 10 39 39 H 1.09004 * 109.47307 * 209.99737 * 12 11 10 40 40 H 1.09001 * 109.47380 * 330.00298 * 12 11 10 41 41 H 1.09005 * 109.46939 * 299.99922 * 15 13 11 42 42 H 1.09001 * 109.46843 * 59.99688 * 15 13 11 43 43 H 0.96999 * 120.00087 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5354 0.0006 5 6 4.9075 1.2842 0.0003 6 8 4.9043 2.4929 -0.1223 7 7 6.0748 0.6231 0.1304 8 6 6.0844 -0.8404 0.1960 9 6 7.3340 1.3681 0.2060 10 6 7.6484 1.6909 1.6682 11 7 8.9079 2.4353 1.7439 12 6 10.1764 1.7163 1.8854 13 6 8.8996 3.7817 1.6834 14 8 7.8495 4.3770 1.5659 15 6 10.1951 4.5476 1.7619 16 16 9.8547 6.3219 1.6528 17 6 11.4947 6.9558 1.7679 18 1 12.3295 6.2783 1.8708 19 6 11.7138 8.3257 1.7254 20 7 12.9390 8.7992 1.8108 21 14 10.2700 9.4974 1.5467 22 1 9.7659 9.8707 2.8927 23 1 10.7103 10.7193 0.8266 24 1 9.1861 8.8338 0.7787 25 7 3.4761 -0.7657 -0.0041 26 8 2.3073 -1.0750 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 2.0301 2.1272 -0.0004 31 1 6.0689 -1.2495 -0.8142 32 1 6.9855 -1.1752 0.7097 33 1 5.2060 -1.1854 0.7412 34 1 8.1389 0.7647 -0.2140 35 1 7.2421 2.2955 -0.3593 36 1 6.8436 2.2942 2.0882 37 1 7.7404 0.7634 2.2335 38 1 10.5794 1.4926 0.8976 39 1 10.8855 2.3351 2.4354 40 1 10.0083 0.7863 2.4284 41 1 10.6893 4.3296 2.7087 42 1 10.8431 4.2509 0.9371 43 1 13.0923 9.7565 1.7807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298033368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = -13.891829 kcal Electronic energy + Delta-G solvation = -26641.434730 eV Core-core repulsion = 22623.530847 eV Total energy + Delta-G solvation = -4017.903883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.18187 -41.33548 -40.67196 -37.48379 -36.43022 -35.24531 -34.68959 -34.37683 -32.26402 -30.05683 -28.76367 -27.90809 -27.86295 -27.64741 -25.95369 -24.13242 -23.26695 -20.80520 -20.37474 -19.60840 -18.97230 -18.50566 -18.23719 -18.01853 -17.53845 -17.22980 -17.07019 -16.66478 -16.31986 -15.72762 -15.33424 -14.95382 -14.87165 -14.77604 -14.56232 -14.43056 -14.21317 -14.15821 -13.97237 -13.75569 -13.65051 -13.40861 -13.35755 -13.18520 -13.03753 -12.99045 -12.69576 -12.23594 -12.12154 -11.88719 -11.63518 -11.55137 -11.19187 -11.00714 -10.53475 -10.43296 -10.28650 -9.62192 -9.03203 -8.53545 -6.24465 -0.04951 0.60713 0.94036 1.28439 1.34405 1.46365 1.50180 1.59623 1.88646 1.98336 2.14811 2.23368 2.66802 2.72167 2.84538 3.38543 3.52759 3.80540 3.87820 3.89829 4.02294 4.12877 4.17982 4.21903 4.27848 4.32870 4.42045 4.56097 4.59668 4.69334 4.75964 4.78034 4.79717 4.83686 4.92681 4.95180 5.21659 5.23479 5.49361 5.69248 5.97276 6.09285 6.17344 6.70449 6.92037 6.96389 7.05276 8.58589 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.002177 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.757503 B =12856.679485 C =14092.424671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.004 4.004 3 C -0.211 4.211 4 C -0.043 4.043 5 C 0.581 3.419 6 O -0.559 6.559 7 N -0.596 5.596 8 C 0.070 3.930 9 C 0.106 3.894 10 C 0.111 3.889 11 N -0.608 5.608 12 C 0.068 3.932 13 C 0.526 3.474 14 O -0.560 6.560 15 C -0.102 4.102 16 S -0.187 6.187 17 C -0.525 4.525 18 H 0.066 0.934 19 C 0.048 3.952 20 N -0.914 5.914 21 Si 0.911 3.089 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.242 1.242 25 N -0.331 5.331 26 O 0.122 5.878 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.181 0.819 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.412 -29.540 -2.604 36.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 C -0.234 4.234 4 C -0.200 4.200 5 C 0.368 3.632 6 O -0.435 6.435 7 N -0.329 5.329 8 C -0.071 4.071 9 C -0.018 4.018 10 C -0.013 4.013 11 N -0.342 5.342 12 C -0.073 4.073 13 C 0.313 3.687 14 O -0.437 6.437 15 C -0.252 4.252 16 S 0.040 5.960 17 C -0.672 4.672 18 H 0.084 0.916 19 C -0.158 4.158 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.166 1.166 25 N -0.033 5.033 26 O 0.047 5.953 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.199 0.801 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.863 -28.909 -2.843 36.356 hybrid contribution 1.059 1.276 0.054 1.659 sum -20.803 -27.632 -2.789 34.700 Atomic orbital electron populations 1.20684 0.79852 1.06621 1.06006 1.25144 0.97938 0.83738 0.99910 1.22658 0.89490 1.02696 1.08601 1.23330 0.96410 0.90914 1.09346 1.17482 0.82984 0.85908 0.76849 1.90885 1.86932 1.15033 1.50669 1.47740 1.05090 1.09178 1.70876 1.22358 1.05453 0.75765 1.03520 1.21890 0.85208 0.97203 0.97475 1.21767 0.85707 0.97099 0.96772 1.47739 1.09247 1.04298 1.72908 1.22225 0.83192 0.98299 1.03603 1.20222 0.89787 0.83094 0.75611 1.90743 1.34196 1.69252 1.49549 1.23268 0.98606 0.96100 1.07261 1.84890 1.12589 1.01799 1.96738 1.22415 0.91517 0.95744 1.57569 0.91602 1.25502 0.98241 0.98980 0.93061 1.70003 1.21238 1.14949 1.48979 0.85913 0.80591 0.79870 0.80286 1.18705 1.18098 1.16627 1.74291 0.97740 1.14389 1.16891 1.84750 1.11126 1.34090 1.65374 0.87329 0.87552 0.87382 0.80144 0.91506 0.87383 0.89571 0.86114 0.93225 0.93497 0.86069 0.90568 0.90641 0.87372 0.86632 0.86744 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.14 10.44 71.23 0.74 0.60 16 2 C 0.00 -0.05 7.47 25.01 0.19 0.14 16 3 C -0.21 -3.95 10.93 22.60 0.25 -3.70 16 4 C -0.04 -0.99 6.86 42.96 0.29 -0.70 16 5 C 0.58 16.96 7.70 86.93 0.67 17.63 16 6 O -0.56 -21.94 16.52 -3.71 -0.06 -22.00 16 7 N -0.60 -13.28 2.87 -849.63 -2.44 -15.72 16 8 C 0.07 0.93 9.64 127.77 1.23 2.17 16 9 C 0.11 2.45 5.73 86.38 0.50 2.94 16 10 C 0.11 2.60 5.77 86.38 0.50 3.10 16 11 N -0.61 -15.64 2.87 -846.73 -2.43 -18.08 16 12 C 0.07 1.03 10.29 127.77 1.31 2.35 16 13 C 0.53 19.87 7.69 87.66 0.67 20.54 16 14 O -0.56 -27.00 15.44 -3.02 -0.05 -27.05 16 15 C -0.10 -4.02 4.71 71.24 0.34 -3.68 16 16 S -0.19 -9.92 18.55 -56.49 -1.05 -10.96 16 17 C -0.52 -31.17 10.04 67.95 0.68 -30.49 16 18 H 0.07 4.07 8.03 -2.91 -0.02 4.05 16 19 C 0.05 2.86 5.50 84.86 0.47 3.33 16 20 N -0.91 -56.21 13.97 21.65 0.30 -55.91 16 21 Si 0.91 46.52 27.74 68.60 1.90 48.42 16 22 H -0.26 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.24 -12.58 6.74 99.48 0.67 -11.91 16 25 N -0.33 -6.21 8.72 -49.52 -0.43 -6.64 16 26 O 0.12 1.79 11.18 71.85 0.80 2.59 16 27 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 0.73 8.03 -2.39 -0.02 0.71 16 33 H 0.09 1.26 5.40 -2.39 -0.01 1.25 16 34 H 0.12 1.85 8.07 -2.39 -0.02 1.83 16 35 H 0.05 1.64 7.37 -2.39 -0.02 1.62 16 36 H 0.05 1.52 7.42 -2.39 -0.02 1.50 16 37 H 0.12 1.75 7.89 -2.38 -0.02 1.73 16 38 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.07 1.25 6.44 -2.39 -0.02 1.23 16 40 H 0.11 0.88 7.89 -2.39 -0.02 0.86 16 41 H 0.12 4.12 7.40 -2.39 -0.02 4.11 16 42 H 0.11 4.12 8.11 -2.40 -0.02 4.10 16 43 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -89.62 380.72 5.38 -84.24 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 0.99 Total: 6.89 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 7.84 Total: 14.22 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -5.00 Total: -96.36 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: 0.70 Total: -46.46 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.42 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.05 Total: -10.96 kcal Total: -89.62 5.38 -84.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298033368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.351 kcal (2) G-P(sol) polarization free energy of solvation -89.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds