Wall clock time and date at job start Sat Apr 11 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48500 * 109.47181 * 240.00039 * 3 2 1 5 5 H 1.48501 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47232 * 119.99953 * 3 2 1 7 7 C 1.38802 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99732 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00030 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47533 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99648 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00443 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00246 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47136 * 184.98196 * 14 13 11 16 16 H 1.08998 * 112.77883 * 314.88683 * 15 14 13 17 17 C 1.53757 * 113.55048 * 85.74096 * 15 14 13 18 18 C 1.53500 * 83.25723 * 140.98692 * 17 15 14 19 19 N 1.47067 * 113.46649 * 184.10212 * 15 14 13 20 20 C 1.34772 * 136.05655 * 38.14087 * 19 15 14 21 21 O 1.21280 * 120.00005 * 354.62871 * 20 19 15 22 22 C 1.50699 * 119.99782 * 174.91309 * 20 19 15 23 23 H 1.08996 * 110.22182 * 41.65262 * 22 20 19 24 24 C 1.54481 * 110.24640 * 279.71892 * 22 20 19 25 25 C 1.54621 * 101.76516 * 215.58636 * 24 22 20 26 26 C 1.51277 * 104.20059 * 24.79863 * 25 24 22 27 27 O 1.21279 * 124.94876 * 163.74494 * 26 25 24 28 28 N 1.34423 * 110.11326 * 343.74763 * 26 25 24 29 29 H 0.97002 * 119.99976 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46791 * 60.00388 * 10 9 7 31 31 H 1.09000 * 109.47427 * 300.00576 * 10 9 7 32 32 H 0.96997 * 119.99749 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.46730 * 64.98043 * 14 13 11 34 34 H 1.08998 * 109.46848 * 304.98266 * 14 13 11 35 35 H 1.09003 * 114.39563 * 27.42935 * 17 15 14 36 36 H 1.08996 * 114.09061 * 254.53211 * 17 15 14 37 37 H 1.09002 * 113.46812 * 218.98452 * 18 17 15 38 38 H 1.08996 * 113.51697 * 88.55157 * 18 17 15 39 39 H 1.09002 * 110.97061 * 333.70576 * 24 22 20 40 40 H 1.08996 * 110.96537 * 97.46397 * 24 22 20 41 41 H 1.09003 * 110.48538 * 143.48011 * 25 24 22 42 42 H 1.09006 * 110.48952 * 265.98431 * 25 24 22 43 43 H 0.97005 * 124.35153 * 179.56852 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0048 12 8 0.7911 -5.5023 0.0050 13 7 2.8441 -6.3431 0.0054 14 6 2.3304 -7.7151 0.0066 15 6 3.4974 -8.6965 0.1323 16 1 4.3320 -8.4459 -0.5225 17 6 3.9193 -8.9665 1.5860 18 6 4.0940 -10.4043 1.0777 19 7 3.0886 -10.1066 0.0464 20 6 2.1915 -10.8152 -0.6675 21 8 1.4171 -10.2442 -1.4058 22 6 2.1466 -12.3164 -0.5436 23 1 2.2614 -12.6119 0.4993 24 6 3.2563 -12.9574 -1.4061 25 6 2.5632 -14.2468 -1.9042 26 6 1.0872 -13.9205 -1.8469 27 8 0.2146 -14.5485 -2.4082 28 7 0.8834 -12.8330 -1.0835 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7306 0.8929 31 1 3.1245 -3.7321 -0.8871 32 1 3.8009 -6.1835 0.0049 33 1 1.7956 -7.9036 -0.9243 34 1 1.6516 -7.8480 0.8490 35 1 3.1198 -8.8449 2.3168 36 1 4.8498 -8.4791 1.8769 37 1 3.7708 -11.1601 1.7936 38 1 5.0856 -10.6048 0.6721 39 1 3.5236 -12.3105 -2.2417 40 1 4.1323 -13.1938 -0.8021 41 1 2.8650 -14.4712 -2.9273 42 1 2.7967 -15.0840 -1.2463 43 1 0.0134 -12.4399 -0.9118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298982614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:18 Heat of formation + Delta-G solvation = -62.660322 kcal Electronic energy + Delta-G solvation = -26287.989406 eV Core-core repulsion = 22267.970762 eV Total energy + Delta-G solvation = -4020.018643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.50901 -40.46127 -39.03228 -38.28038 -36.52965 -34.48912 -32.43062 -31.94277 -31.04807 -30.01223 -28.39003 -27.63081 -25.48211 -23.67766 -23.48493 -22.15210 -21.02236 -20.58265 -19.52532 -18.14387 -17.90954 -17.68635 -16.84675 -16.47613 -16.36558 -15.89464 -15.33655 -15.28914 -14.90636 -14.80756 -14.56211 -14.16043 -14.01675 -13.89315 -13.82093 -13.48283 -13.33507 -13.16836 -13.01842 -12.56336 -12.48245 -12.40626 -12.08852 -11.78721 -11.75754 -11.13050 -11.04885 -11.04124 -10.77121 -10.47075 -10.32231 -9.83211 -9.60592 -9.43812 -9.27787 -9.06721 -8.90688 -8.23869 -6.50367 -6.21501 -3.92441 1.91654 2.01369 2.21247 2.86764 3.06468 3.09188 3.22980 3.27508 3.31396 3.55896 3.70700 3.72365 3.77711 3.89806 4.20117 4.22052 4.33349 4.39871 4.42674 4.62791 4.66936 4.77411 4.82066 4.99896 5.08622 5.13363 5.14992 5.15555 5.24110 5.27233 5.49058 5.62924 5.69016 5.87958 5.96381 6.11777 6.22931 6.53201 6.53780 7.12784 7.56428 7.58703 7.65797 7.78408 8.34619 8.59834 9.23355 10.85825 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026726 B = 0.001785 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.420521 B =15684.508867 C =16393.162277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.514 6.514 13 N -0.737 5.737 14 C 0.116 3.884 15 C 0.124 3.876 16 H 0.102 0.898 17 C -0.150 4.150 18 C 0.098 3.902 19 N -0.639 5.639 20 C 0.531 3.469 21 O -0.513 6.513 22 C 0.121 3.879 23 H 0.105 0.895 24 C -0.119 4.119 25 C -0.155 4.155 26 C 0.523 3.477 27 O -0.528 6.528 28 N -0.711 5.711 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.547 -28.491 4.046 33.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.387 6.387 13 N -0.393 5.393 14 C -0.009 4.009 15 C 0.021 3.979 16 H 0.120 0.880 17 C -0.188 4.188 18 C -0.025 4.025 19 N -0.377 5.377 20 C 0.318 3.682 21 O -0.387 6.387 22 C 0.011 3.989 23 H 0.123 0.877 24 C -0.158 4.158 25 C -0.195 4.195 26 C 0.309 3.691 27 O -0.403 6.403 28 N -0.367 5.367 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 13.380 -28.957 3.170 32.056 hybrid contribution 2.186 1.617 0.102 2.721 sum 15.566 -27.341 3.272 31.631 Atomic orbital electron populations 1.70009 1.05958 1.27582 1.46684 1.24999 0.95031 0.99034 0.94543 0.86220 0.79227 0.81247 0.78765 1.19951 1.20812 1.19947 1.22823 0.94862 0.91662 1.59140 0.90960 1.85455 1.04867 0.96294 1.96719 1.23520 1.06600 0.95234 1.04924 1.20316 0.86510 0.86202 0.75201 1.90727 1.15393 1.85507 1.47078 1.45838 1.09867 1.05138 1.78422 1.21425 0.95108 0.80373 1.03985 1.22990 0.96544 0.81828 0.96550 0.88002 1.23635 1.03683 0.95611 0.95876 1.23063 0.92182 0.98632 0.88626 1.49695 1.36699 1.09953 1.41365 1.20302 0.80170 0.88662 0.79037 1.90831 1.39262 1.71142 1.37443 1.21493 0.86316 0.90849 1.00215 0.87695 1.22590 0.96769 0.96267 1.00136 1.22376 0.92771 0.98980 1.05352 1.20811 0.91514 0.79727 0.77070 1.90791 1.50010 1.53639 1.45897 1.45995 1.09146 1.30198 1.51382 0.92109 0.89168 0.89192 0.76924 0.90190 0.90912 0.88028 0.88496 0.89829 0.89078 0.89316 0.88067 0.87401 0.87176 0.74178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.02 6.16 36.00 0.22 -2.79 16 11 C 0.53 9.91 7.85 -10.99 -0.09 9.83 16 12 O -0.51 -12.04 15.86 5.55 0.09 -11.95 16 13 N -0.74 -9.35 5.55 -60.29 -0.33 -9.68 16 14 C 0.12 1.39 5.40 -4.04 -0.02 1.37 16 15 C 0.12 0.84 4.09 -72.26 -0.30 0.55 16 16 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 17 C -0.15 -0.55 8.03 -26.08 -0.21 -0.76 16 18 C 0.10 0.21 8.41 -8.50 -0.07 0.14 16 19 N -0.64 -4.09 3.56 -177.28 -0.63 -4.72 16 20 C 0.53 4.68 7.20 -10.99 -0.08 4.60 16 21 O -0.51 -7.22 15.92 5.56 0.09 -7.13 16 22 C 0.12 0.66 3.76 -68.16 -0.26 0.40 16 23 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 24 C -0.12 -0.38 6.67 -25.10 -0.17 -0.55 16 25 C -0.15 -0.69 6.86 -26.75 -0.18 -0.87 16 26 C 0.52 4.89 8.43 -10.86 -0.09 4.80 16 27 O -0.53 -7.37 18.03 5.56 0.10 -7.27 16 28 N -0.71 -5.87 5.46 -53.88 -0.29 -6.17 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.40 3.51 8.48 -40.82 -0.35 3.16 16 33 H 0.08 1.25 7.05 -51.93 -0.37 0.88 16 34 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 35 H 0.10 0.49 7.97 -51.93 -0.41 0.08 16 36 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 38 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.09 0.39 7.91 -51.93 -0.41 -0.02 16 40 H 0.10 0.01 8.14 -51.93 -0.42 -0.42 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.42 3.77 8.94 -40.82 -0.36 3.40 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -41.63 382.67 -8.84 -50.48 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.08 Total: -0.01 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.04 Total: 3.75 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.53 Total: -46.08 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.28 Total: -26.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -41.63 -8.84 -50.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298982614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.183 kcal (2) G-P(sol) polarization free energy of solvation -41.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds