Wall clock time and date at job start Sat Apr 11 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48500 * 109.47181 * 240.00039 * 3 2 1 5 5 H 1.48501 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47232 * 119.99953 * 3 2 1 7 7 C 1.38802 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99732 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00030 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47533 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99648 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00443 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00246 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47136 * 184.98196 * 14 13 11 16 16 H 1.08998 * 112.77883 * 314.88683 * 15 14 13 17 17 C 1.53757 * 113.55048 * 85.74096 * 15 14 13 18 18 C 1.53500 * 83.25723 * 140.98692 * 17 15 14 19 19 N 1.47067 * 113.46649 * 184.10212 * 15 14 13 20 20 C 1.34772 * 136.05655 * 38.14087 * 19 15 14 21 21 O 1.21280 * 120.00005 * 354.62871 * 20 19 15 22 22 C 1.50699 * 119.99782 * 174.91309 * 20 19 15 23 23 H 1.08996 * 110.22182 * 41.65262 * 22 20 19 24 24 C 1.54481 * 110.24640 * 279.71892 * 22 20 19 25 25 C 1.54621 * 101.76516 * 215.58636 * 24 22 20 26 26 C 1.51277 * 104.20059 * 24.79863 * 25 24 22 27 27 O 1.21279 * 124.94876 * 163.74494 * 26 25 24 28 28 N 1.34423 * 110.11326 * 343.74763 * 26 25 24 29 29 H 0.97002 * 119.99976 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46791 * 60.00388 * 10 9 7 31 31 H 1.09000 * 109.47427 * 300.00576 * 10 9 7 32 32 H 0.96997 * 119.99749 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.46730 * 64.98043 * 14 13 11 34 34 H 1.08998 * 109.46848 * 304.98266 * 14 13 11 35 35 H 1.09003 * 114.39563 * 27.42935 * 17 15 14 36 36 H 1.08996 * 114.09061 * 254.53211 * 17 15 14 37 37 H 1.09002 * 113.46812 * 218.98452 * 18 17 15 38 38 H 1.08996 * 113.51697 * 88.55157 * 18 17 15 39 39 H 1.09002 * 110.97061 * 333.70576 * 24 22 20 40 40 H 1.08996 * 110.96537 * 97.46397 * 24 22 20 41 41 H 1.09003 * 110.48538 * 143.48011 * 25 24 22 42 42 H 1.09006 * 110.48952 * 265.98431 * 25 24 22 43 43 H 0.97005 * 124.35153 * 179.56852 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0048 12 8 0.7911 -5.5023 0.0050 13 7 2.8441 -6.3431 0.0054 14 6 2.3304 -7.7151 0.0066 15 6 3.4974 -8.6965 0.1323 16 1 4.3320 -8.4459 -0.5225 17 6 3.9193 -8.9665 1.5860 18 6 4.0940 -10.4043 1.0777 19 7 3.0886 -10.1066 0.0464 20 6 2.1915 -10.8152 -0.6675 21 8 1.4171 -10.2442 -1.4058 22 6 2.1466 -12.3164 -0.5436 23 1 2.2614 -12.6119 0.4993 24 6 3.2563 -12.9574 -1.4061 25 6 2.5632 -14.2468 -1.9042 26 6 1.0872 -13.9205 -1.8469 27 8 0.2146 -14.5485 -2.4082 28 7 0.8834 -12.8330 -1.0835 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7306 0.8929 31 1 3.1245 -3.7321 -0.8871 32 1 3.8009 -6.1835 0.0049 33 1 1.7956 -7.9036 -0.9243 34 1 1.6516 -7.8480 0.8490 35 1 3.1198 -8.8449 2.3168 36 1 4.8498 -8.4791 1.8769 37 1 3.7708 -11.1601 1.7936 38 1 5.0856 -10.6048 0.6721 39 1 3.5236 -12.3105 -2.2417 40 1 4.1323 -13.1938 -0.8021 41 1 2.8650 -14.4712 -2.9273 42 1 2.7967 -15.0840 -1.2463 43 1 0.0134 -12.4399 -0.9118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298982614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:17 Heat of formation + Delta-G solvation = -98.632254 kcal Electronic energy + Delta-G solvation = -26289.549266 eV Core-core repulsion = 22267.970762 eV Total energy + Delta-G solvation = -4021.578503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06764 -41.11801 -40.39341 -39.01821 -37.23966 -35.77589 -34.58511 -32.42548 -31.89127 -31.12533 -28.95173 -28.56155 -27.62183 -24.20107 -24.02600 -22.58270 -21.96440 -21.57595 -20.22977 -19.78013 -18.61487 -18.39854 -17.77612 -17.68648 -17.04309 -16.88012 -16.85134 -16.63171 -16.17040 -15.80862 -15.58122 -15.14179 -14.95169 -14.76582 -14.63559 -14.50193 -14.27109 -13.96472 -13.72086 -13.57477 -13.45861 -13.17393 -12.90864 -12.87426 -12.83675 -12.62982 -12.42283 -12.10305 -11.79042 -11.64270 -11.17706 -11.12707 -11.06428 -10.99653 -10.28055 -10.26417 -10.14767 -9.80092 -8.68558 -8.34358 -6.13563 1.21906 1.34810 1.41147 1.44608 1.47079 1.54923 1.56712 1.66384 2.24106 2.27850 2.41559 2.99737 3.14921 3.27932 3.31972 3.41691 3.58950 3.71776 3.95532 3.97580 4.02105 4.04043 4.06807 4.30268 4.37970 4.49651 4.54746 4.55334 4.69462 4.76823 4.79509 4.92512 4.96164 5.03279 5.07359 5.29213 5.38587 5.41513 5.61934 5.88359 6.19605 6.46518 6.64227 6.95843 7.06414 7.10140 7.21971 8.74683 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026726 B = 0.001785 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.420521 B =15684.508867 C =16393.162277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.001 2.999 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.087 0.913 9 S -0.161 6.161 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.572 6.572 13 N -0.704 5.704 14 C 0.121 3.879 15 C 0.118 3.882 16 H 0.128 0.872 17 C -0.142 4.142 18 C 0.106 3.894 19 N -0.640 5.640 20 C 0.522 3.478 21 O -0.584 6.584 22 C 0.122 3.878 23 H 0.145 0.855 24 C -0.107 4.107 25 C -0.143 4.143 26 C 0.507 3.493 27 O -0.590 6.590 28 N -0.719 5.719 29 H 0.271 0.729 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.422 0.578 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.075 0.925 40 H 0.151 0.849 41 H 0.112 0.888 42 H 0.142 0.858 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.189 -29.542 5.723 37.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.692 4.692 8 H 0.105 0.895 9 S 0.066 5.934 10 C -0.276 4.276 11 C 0.317 3.683 12 O -0.450 6.450 13 N -0.359 5.359 14 C -0.004 4.004 15 C 0.015 3.985 16 H 0.146 0.854 17 C -0.180 4.180 18 C -0.014 4.014 19 N -0.376 5.376 20 C 0.311 3.689 21 O -0.464 6.464 22 C 0.014 3.986 23 H 0.162 0.838 24 C -0.145 4.145 25 C -0.183 4.183 26 C 0.296 3.704 27 O -0.470 6.470 28 N -0.372 5.372 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.094 0.906 40 H 0.169 0.831 41 H 0.130 0.870 42 H 0.160 0.840 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 19.172 -30.033 4.909 35.967 hybrid contribution 0.465 1.891 -0.380 1.984 sum 19.637 -28.142 4.529 34.614 Atomic orbital electron populations 1.70195 1.08111 1.28662 1.48004 1.26189 0.95973 1.03511 0.93738 0.84966 0.77738 0.75444 0.79601 1.18628 1.20625 1.18334 1.23176 0.95427 0.91716 1.58900 0.89517 1.85723 1.10986 0.99640 1.97089 1.23341 1.03400 0.93609 1.07240 1.20214 0.86162 0.86968 0.74964 1.90717 1.17974 1.86193 1.50138 1.45461 1.10453 1.04318 1.75674 1.21404 0.97278 0.80877 1.00870 1.23251 0.94616 0.80748 0.99932 0.85404 1.23638 1.04315 0.97154 0.92848 1.23417 0.92508 0.98113 0.87373 1.49887 1.36726 1.09759 1.41219 1.20972 0.79640 0.90076 0.78183 1.90808 1.42200 1.72653 1.40705 1.21851 0.85668 0.88411 1.02653 0.83776 1.22713 0.97216 0.94584 0.99953 1.22433 0.88552 1.00718 1.06587 1.21808 0.93426 0.79254 0.75941 1.90743 1.52267 1.55684 1.48316 1.46273 1.10039 1.29905 1.50970 0.92053 0.86352 0.86974 0.74025 0.94456 0.93062 0.89605 0.85476 0.87305 0.85374 0.90648 0.83089 0.86994 0.84024 0.75526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.74 13.22 21.65 0.29 -56.45 16 2 C 0.01 0.59 5.49 84.86 0.47 1.06 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.39 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.54 -30.99 9.50 67.96 0.65 -30.34 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.16 -9.09 20.57 -56.49 -1.16 -10.25 16 10 C -0.12 -4.85 6.16 71.23 0.44 -4.42 16 11 C 0.53 20.00 7.85 87.66 0.69 20.68 16 12 O -0.57 -28.33 15.86 -3.05 -0.05 -28.38 16 13 N -0.70 -17.12 5.55 -463.06 -2.57 -19.69 16 14 C 0.12 2.94 5.40 86.38 0.47 3.40 16 15 C 0.12 1.30 4.09 41.88 0.17 1.47 16 16 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 17 C -0.14 -0.44 8.03 31.02 0.25 -0.19 16 18 C 0.11 -0.15 8.41 83.18 0.70 0.55 16 19 N -0.64 -6.49 3.56 -833.17 -2.97 -9.46 16 20 C 0.52 8.86 7.20 87.66 0.63 9.49 16 21 O -0.58 -17.75 15.92 -3.03 -0.05 -17.79 16 22 C 0.12 1.07 3.76 44.70 0.17 1.23 16 23 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 24 C -0.11 -0.28 6.67 31.65 0.21 -0.07 16 25 C -0.14 -0.92 6.86 30.58 0.21 -0.71 16 26 C 0.51 9.70 8.43 87.90 0.74 10.44 16 27 O -0.59 -17.71 18.03 -3.03 -0.05 -17.76 16 28 N -0.72 -12.25 5.46 -442.97 -2.42 -14.67 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 31 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 32 H 0.42 6.12 8.48 -92.71 -0.79 5.34 16 33 H 0.04 1.26 7.05 -2.39 -0.02 1.24 16 34 H 0.05 1.46 7.90 -2.39 -0.02 1.45 16 35 H 0.09 0.60 7.97 -2.39 -0.02 0.58 16 36 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.07 0.46 7.91 -2.39 -0.02 0.44 16 40 H 0.15 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.14 0.06 8.14 -2.38 -0.02 0.05 16 43 H 0.41 8.27 8.94 -92.70 -0.83 7.45 16 Total: -1.00 -103.48 382.67 -1.73 -105.21 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.56 Total: 11.25 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 5.79 Total: 12.60 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -7.67 Total: -100.27 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -0.15 Total: -63.93 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.16 Total: -10.25 kcal Total: -103.48 -1.73 -105.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298982614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.574 kcal (2) G-P(sol) polarization free energy of solvation -103.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds