Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48497 * 109.47658 * 270.00671 * 3 2 1 5 5 H 1.48505 * 109.46896 * 30.00617 * 3 2 1 6 6 H 1.48498 * 109.47042 * 150.00096 * 3 2 1 7 7 C 1.38799 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00118 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00045 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00284 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47401 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99760 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00129 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99868 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46843 * 185.11397 * 14 13 11 16 16 H 1.08995 * 112.96306 * 308.96865 * 15 14 13 17 17 C 1.53948 * 113.76847 * 177.29115 * 15 14 13 18 18 C 1.53938 * 86.29160 * 221.98152 * 17 15 14 19 19 N 1.47576 * 113.77000 * 80.65259 * 15 14 13 20 20 C 1.34784 * 134.49452 * 319.05045 * 19 15 14 21 21 O 1.21285 * 119.99628 * 5.08219 * 20 19 15 22 22 C 1.50696 * 120.00206 * 185.08344 * 20 19 15 23 23 H 1.08997 * 110.43300 * 300.69982 * 22 20 19 24 24 C 1.54632 * 110.48444 * 178.15781 * 22 20 19 25 25 C 1.54826 * 101.60477 * 266.08025 * 24 22 20 26 26 N 1.46767 * 105.49454 * 334.57035 * 25 24 22 27 27 C 1.34418 * 111.30023 * 17.03288 * 26 25 24 28 28 O 1.21283 * 124.93930 * 179.62613 * 27 26 25 29 29 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47001 * 59.99708 * 10 9 7 31 31 H 1.09007 * 109.46588 * 300.00348 * 10 9 7 32 32 H 0.96998 * 120.00058 * 0.02562 * 13 11 10 33 33 H 1.08994 * 109.47307 * 65.11196 * 14 13 11 34 34 H 1.09001 * 109.47060 * 305.10780 * 14 13 11 35 35 H 1.08998 * 113.74085 * 336.33111 * 17 15 14 36 36 H 1.08998 * 113.73937 * 107.63231 * 17 15 14 37 37 H 1.09000 * 113.77157 * 137.91078 * 18 17 15 38 38 H 1.08999 * 113.76643 * 269.30605 * 18 17 15 39 39 H 1.08999 * 110.97070 * 24.24154 * 24 22 20 40 40 H 1.09007 * 110.96250 * 147.99917 * 24 22 20 41 41 H 1.09002 * 110.21950 * 215.57119 * 25 24 22 42 42 H 1.08997 * 110.32917 * 93.61974 * 25 24 22 43 43 H 0.97001 * 124.34859 * 197.01917 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0008 12 8 6.3440 -2.2963 -0.0014 13 7 6.0456 -4.4947 -0.0001 14 6 7.4907 -4.7358 -0.0006 15 6 7.7572 -6.2370 -0.1281 16 1 7.1988 -6.8310 0.5952 17 6 9.2519 -6.5975 -0.2052 18 6 8.8511 -7.5996 -1.3029 19 7 7.6638 -6.7423 -1.5116 20 6 6.8319 -6.5127 -2.5469 21 8 5.9712 -5.6631 -2.4563 22 6 6.9713 -7.3117 -3.8170 23 1 7.9645 -7.1761 -4.2448 24 6 5.8825 -6.9025 -4.8360 25 6 4.7761 -7.9458 -4.5455 26 7 5.4711 -9.1058 -3.9749 27 6 6.7042 -8.7771 -3.5527 28 8 7.4887 -9.5439 -3.0355 29 1 -0.4850 0.8400 0.0004 30 1 3.6433 -3.4318 -0.8906 31 1 3.6439 -3.4314 0.8894 32 1 5.4290 -5.2435 0.0000 33 1 7.9206 -4.3683 0.9311 34 1 7.9459 -4.2132 -0.8419 35 1 9.8818 -5.7831 -0.5631 36 1 9.6370 -7.0681 0.6994 37 1 9.5345 -7.6179 -2.1518 38 1 8.6140 -8.5939 -0.9245 39 1 5.5275 -5.8903 -4.6421 40 1 6.2499 -6.9964 -5.8580 41 1 4.2706 -8.2261 -5.4697 42 1 4.0579 -7.5468 -3.8293 43 1 5.0896 -9.9953 -3.9106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298983146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -64.897196 kcal Electronic energy + Delta-G solvation = -27575.750356 eV Core-core repulsion = 23555.634715 eV Total energy + Delta-G solvation = -4020.115641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44917 -40.14882 -38.83019 -38.03938 -36.54162 -34.31845 -32.37839 -32.12342 -30.52231 -29.87347 -27.97761 -27.64948 -25.54525 -23.63347 -23.22854 -22.07987 -21.12810 -20.31804 -19.14107 -18.04877 -17.86588 -17.59124 -16.71426 -16.47870 -16.12433 -15.86697 -15.40777 -14.99945 -14.89678 -14.78222 -14.46130 -14.16292 -13.83638 -13.71044 -13.67170 -13.17871 -13.10056 -12.81811 -12.78222 -12.73572 -12.35785 -12.00798 -11.84173 -11.75730 -11.69400 -11.35310 -11.18925 -10.95539 -10.50838 -10.42434 -10.01947 -9.79526 -9.57249 -9.35515 -9.04988 -8.94657 -8.75678 -8.40983 -6.82929 -6.23173 -3.93330 1.84427 2.32021 2.42396 2.87646 2.92243 3.17859 3.37040 3.41561 3.55748 3.73412 3.82851 3.92958 4.00341 4.08736 4.38992 4.44910 4.50337 4.62351 4.66897 4.77692 4.87784 4.96363 5.02267 5.09021 5.14937 5.15996 5.25689 5.36137 5.43509 5.47021 5.63212 5.67244 5.72911 5.90335 5.95006 6.17196 6.23864 6.47286 6.68941 7.32403 7.70678 7.77733 7.83224 8.00278 8.47986 8.68066 9.23434 10.86254 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.002777 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.530737 B =10079.509738 C =11420.486679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.518 4.518 8 H 0.087 0.913 9 S -0.144 6.144 10 C -0.120 4.120 11 C 0.537 3.463 12 O -0.528 6.528 13 N -0.720 5.720 14 C 0.125 3.875 15 C 0.124 3.876 16 H 0.101 0.899 17 C -0.146 4.146 18 C 0.112 3.888 19 N -0.640 5.640 20 C 0.548 3.452 21 O -0.506 6.506 22 C -0.146 4.146 23 H 0.128 0.872 24 C -0.121 4.121 25 C 0.097 3.903 26 N -0.726 5.726 27 C 0.533 3.467 28 O -0.524 6.524 29 H 0.270 0.730 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.398 0.602 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.590 -22.377 -7.223 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.666 4.666 8 H 0.105 0.895 9 S 0.083 5.917 10 C -0.270 4.270 11 C 0.323 3.677 12 O -0.404 6.404 13 N -0.374 5.374 14 C 0.000 4.000 15 C 0.022 3.978 16 H 0.118 0.882 17 C -0.184 4.184 18 C -0.011 4.011 19 N -0.377 5.377 20 C 0.335 3.665 21 O -0.380 6.380 22 C -0.171 4.171 23 H 0.146 0.854 24 C -0.159 4.159 25 C -0.027 4.027 26 N -0.382 5.382 27 C 0.317 3.683 28 O -0.400 6.400 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.232 0.768 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 18.548 -20.492 -7.092 28.535 hybrid contribution -1.368 -1.240 -0.206 1.858 sum 17.180 -21.732 -7.298 28.648 Atomic orbital electron populations 1.69942 1.05920 1.27670 1.48439 1.24711 0.94440 0.98941 0.93266 0.86725 0.81912 0.83253 0.79906 1.19244 1.20034 1.15905 1.22339 0.88431 0.97479 1.58359 0.89479 1.84724 1.09052 1.00549 1.97405 1.23231 0.94341 1.03846 1.05621 1.20134 0.90428 0.82208 0.74962 1.90676 1.58811 1.42300 1.48602 1.45692 1.06699 1.08039 1.76944 1.21385 0.82926 0.93051 1.02665 1.23157 0.96272 0.95311 0.83101 0.88153 1.23594 0.94980 0.99874 0.99977 1.23237 0.84801 0.95143 0.97874 1.50236 1.30896 1.44843 1.11716 1.19405 0.80372 0.83336 0.83402 1.90822 1.33461 1.32543 1.81178 1.22087 1.04225 0.94200 0.96553 0.85399 1.22706 0.93405 1.01815 0.97958 1.22255 0.95515 0.85408 0.99521 1.46183 1.16126 1.13164 1.62682 1.20269 0.81885 0.88923 0.77210 1.90751 1.49602 1.56254 1.43438 0.92027 0.88481 0.88855 0.76757 0.90498 0.90932 0.88355 0.89019 0.89832 0.88939 0.86798 0.89165 0.89628 0.90067 0.74744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.20 13.97 55.49 0.78 -26.42 16 2 C 0.09 2.84 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.35 27.74 -169.99 -4.71 17.63 16 4 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.24 -6.13 6.74 56.52 0.38 -5.75 16 7 C -0.52 -15.44 10.04 30.94 0.31 -15.12 16 8 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 9 S -0.14 -3.82 18.55 -107.50 -1.99 -5.81 16 10 C -0.12 -2.53 6.16 36.00 0.22 -2.31 16 11 C 0.54 10.49 7.85 -10.99 -0.09 10.40 16 12 O -0.53 -12.18 15.86 5.55 0.09 -12.09 16 13 N -0.72 -10.54 4.18 -60.29 -0.25 -10.79 16 14 C 0.12 1.48 5.22 -4.04 -0.02 1.46 16 15 C 0.12 1.03 4.28 -66.86 -0.29 0.75 16 16 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 17 C -0.15 -0.79 7.86 -25.80 -0.20 -1.00 16 18 C 0.11 0.74 7.27 -2.79 -0.02 0.72 16 19 N -0.64 -5.92 3.47 -170.11 -0.59 -6.51 16 20 C 0.55 6.00 7.32 -10.98 -0.08 5.92 16 21 O -0.51 -7.20 14.00 5.55 0.08 -7.13 16 22 C -0.15 -1.21 3.11 -91.78 -0.29 -1.49 16 23 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 24 C -0.12 -0.83 6.54 -24.91 -0.16 -0.99 16 25 C 0.10 0.59 7.79 -2.93 -0.02 0.57 16 26 N -0.73 -5.02 6.24 -59.01 -0.37 -5.39 16 27 C 0.53 4.84 7.57 -10.86 -0.08 4.76 16 28 O -0.52 -6.02 16.40 5.55 0.09 -5.93 16 29 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.10 2.00 8.14 -51.92 -0.42 1.58 16 31 H 0.09 1.83 8.14 -51.91 -0.42 1.41 16 32 H 0.40 5.23 8.14 -40.82 -0.33 4.90 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 35 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.64 7.79 -51.93 -0.40 0.23 16 39 H 0.11 1.00 6.94 -51.93 -0.36 0.64 16 40 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.41 2.21 8.96 -40.82 -0.37 1.84 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -38.73 373.68 -8.18 -46.91 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.11 Total: 3.49 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -0.81 Total: 6.40 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.44 Total: -49.11 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: 0.26 Total: -25.14 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -1.99 Total: -5.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.73 -8.18 -46.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298983146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.986 kcal (2) G-P(sol) polarization free energy of solvation -38.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds