Wall clock time and date at job start Sat Apr 11 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46895 * 239.99946 * 3 2 1 5 5 H 1.48497 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46983 * 120.00224 * 3 2 1 7 7 C 1.38801 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00114 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00002 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47626 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99426 * 359.72108 * 11 10 9 13 13 N 1.34772 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.47062 * 136.06172 * 354.31492 * 13 11 10 15 15 C 1.53753 * 87.89193 * 152.96476 * 14 13 11 16 16 C 1.47070 * 136.05532 * 174.68430 * 13 11 10 17 17 H 1.09001 * 113.46400 * 92.24360 * 16 13 11 18 18 C 1.52999 * 113.46704 * 321.86750 * 16 13 11 19 19 N 1.46498 * 109.47146 * 175.82440 * 18 16 13 20 20 C 1.34774 * 120.00236 * 184.96430 * 19 18 16 21 21 O 1.21277 * 120.00100 * 359.97438 * 20 19 18 22 22 C 1.50708 * 120.00190 * 180.02562 * 20 19 18 23 23 H 1.09004 * 110.21448 * 39.51818 * 22 20 19 24 24 C 1.54483 * 110.24150 * 277.49670 * 22 20 19 25 25 C 1.54621 * 101.76742 * 266.41484 * 24 22 20 26 26 C 1.51281 * 104.19473 * 335.20378 * 25 24 22 27 27 O 1.21285 * 124.94152 * 196.27168 * 26 25 24 28 28 N 1.34420 * 110.11761 * 16.25606 * 26 25 24 29 29 H 0.96998 * 119.99758 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47329 * 59.99644 * 10 9 7 31 31 H 1.09010 * 109.47136 * 299.99879 * 10 9 7 32 32 H 1.08995 * 113.47130 * 267.69995 * 14 13 11 33 33 H 1.09006 * 113.47010 * 38.13648 * 14 13 11 34 34 H 1.09005 * 114.39290 * 272.68247 * 15 14 13 35 35 H 1.08996 * 114.27417 * 139.79169 * 15 14 13 36 36 H 1.09002 * 109.47230 * 295.82661 * 18 16 13 37 37 H 1.08997 * 109.47274 * 55.82670 * 18 16 13 38 38 H 0.97000 * 120.00188 * 4.96466 * 19 18 16 39 39 H 1.08999 * 110.96929 * 24.54047 * 24 22 20 40 40 H 1.09000 * 110.96501 * 148.29650 * 24 22 20 41 41 H 1.09000 * 110.48697 * 216.52319 * 25 24 22 42 42 H 1.09004 * 110.60106 * 93.93606 * 25 24 22 43 43 H 0.96994 * 124.34995 * 180.43350 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5157 -3.8914 -0.0013 11 6 1.9873 -5.3028 -0.0030 12 8 0.7911 -5.5023 0.0007 13 7 2.8441 -6.3431 -0.0035 14 6 4.3012 -6.5149 -0.1038 15 6 4.1448 -7.8215 0.6914 16 6 2.7328 -7.8066 0.0896 17 1 2.6681 -8.2995 -0.8804 18 6 1.6501 -8.2745 1.0642 19 7 1.5467 -9.7350 1.0147 20 6 0.5863 -10.3669 1.7181 21 8 -0.1921 -9.7264 2.3925 22 6 0.4803 -11.8694 1.6677 23 1 1.4740 -12.3174 1.6734 24 6 -0.2988 -12.3082 0.4080 25 6 -1.7411 -12.4233 0.9534 26 6 -1.5588 -12.6748 2.4340 27 8 -2.4183 -13.0980 3.1777 28 7 -0.3055 -12.3615 2.8053 29 1 -0.4850 0.8401 0.0004 30 1 3.1237 -3.7318 0.8891 31 1 3.1251 -3.7310 -0.8909 32 1 4.6511 -6.6673 -1.1247 33 1 4.8663 -5.7478 0.4258 34 1 4.1706 -7.6956 1.7738 35 1 4.7727 -8.6392 0.3377 36 1 1.9121 -7.9629 2.0753 37 1 0.6938 -7.8330 0.7842 38 1 2.1695 -10.2474 0.4757 39 1 -0.2364 -11.5504 -0.3730 40 1 0.0586 -13.2715 0.0442 41 1 -2.2603 -13.2596 0.4854 42 1 -2.2886 -11.4952 0.7888 43 1 0.0359 -12.4498 3.7089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299073296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:34 Heat of formation + Delta-G solvation = -62.060581 kcal Electronic energy + Delta-G solvation = -26440.207803 eV Core-core repulsion = 22420.215167 eV Total energy + Delta-G solvation = -4019.992636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28071 -40.55830 -39.16674 -37.61254 -36.50082 -34.99607 -32.45186 -31.80523 -30.91926 -29.64232 -28.27796 -27.63629 -25.49957 -23.92549 -22.86405 -22.20428 -21.11188 -20.81407 -19.12599 -18.14670 -17.90906 -17.71988 -16.76507 -16.46694 -16.12130 -15.65097 -15.38160 -15.23172 -14.87946 -14.82229 -14.39040 -14.11614 -14.03683 -13.95802 -13.81743 -13.54091 -13.19670 -12.97097 -12.78764 -12.52959 -12.29906 -12.05054 -11.94421 -11.80001 -11.73475 -11.08211 -11.05670 -10.90263 -10.79085 -10.62716 -10.23325 -9.85959 -9.57384 -9.44529 -9.29989 -9.08241 -8.75195 -8.27392 -6.53474 -6.23495 -3.94979 2.11739 2.19993 2.43882 2.76687 2.95139 3.10294 3.21813 3.23719 3.27588 3.52517 3.83300 3.90758 3.96271 4.15716 4.17913 4.32094 4.45760 4.58077 4.59888 4.70492 4.83135 4.85903 5.06869 5.11483 5.15392 5.23739 5.26942 5.37125 5.40049 5.47075 5.54049 5.72030 5.78284 5.87103 5.89794 6.08762 6.13715 6.29451 6.57841 7.05837 7.56869 7.73304 7.80892 7.88732 8.32665 8.45368 9.21327 10.83851 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.002005 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.621889 B =13964.225784 C =14988.054538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.144 4.144 11 C 0.561 3.439 12 O -0.508 6.508 13 N -0.648 5.648 14 C 0.101 3.899 15 C -0.152 4.152 16 C 0.123 3.877 17 H 0.095 0.905 18 C 0.111 3.889 19 N -0.722 5.722 20 C 0.494 3.506 21 O -0.516 6.516 22 C 0.116 3.884 23 H 0.114 0.886 24 C -0.120 4.120 25 C -0.159 4.159 26 C 0.528 3.472 27 O -0.529 6.529 28 N -0.711 5.711 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.020 -27.631 -2.073 30.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.295 4.295 11 C 0.351 3.649 12 O -0.381 6.381 13 N -0.388 5.388 14 C -0.022 4.022 15 C -0.190 4.190 16 C 0.019 3.981 17 H 0.113 0.887 18 C -0.013 4.013 19 N -0.376 5.376 20 C 0.277 3.723 21 O -0.390 6.390 22 C 0.006 3.994 23 H 0.132 0.868 24 C -0.158 4.158 25 C -0.199 4.199 26 C 0.315 3.685 27 O -0.405 6.405 28 N -0.366 5.366 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.234 0.766 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.783 -27.321 -1.280 28.727 hybrid contribution 2.639 1.272 0.014 2.930 sum 11.422 -26.049 -1.266 28.471 Atomic orbital electron populations 1.70008 1.05957 1.27636 1.46588 1.25001 0.95044 0.99049 0.94496 0.86211 0.79229 0.81194 0.78788 1.19929 1.20779 1.19924 1.22803 0.94838 0.91566 1.59271 0.90968 1.85447 1.04711 0.96334 1.96731 1.23470 1.06600 0.94528 1.04858 1.20032 0.85337 0.84948 0.74583 1.90732 1.14764 1.84804 1.47814 1.49768 1.08419 1.04916 1.75659 1.22930 0.82047 0.96888 1.00351 1.23643 0.95749 0.98278 1.01341 1.22751 0.94348 0.82655 0.98366 0.88704 1.21628 1.01001 0.78961 0.99727 1.45808 1.33935 1.07909 1.49917 1.21019 0.80930 0.90240 0.80082 1.90817 1.40900 1.67412 1.39847 1.21550 0.98030 0.91300 0.88554 0.86813 1.22600 0.93995 1.03819 0.95420 1.22377 0.98250 1.05829 0.93438 1.20821 0.81381 0.75452 0.90837 1.90774 1.44474 1.45778 1.59454 1.45880 1.13268 1.65797 1.11688 0.92068 0.89222 0.89358 0.89673 0.89948 0.88429 0.89204 0.90821 0.89065 0.76606 0.88456 0.88371 0.87431 0.87198 0.74654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.14 -2.91 5.99 36.01 0.22 -2.69 16 11 C 0.56 10.47 7.97 -10.99 -0.09 10.38 16 12 O -0.51 -11.56 15.47 5.56 0.09 -11.47 16 13 N -0.65 -8.29 3.56 -177.31 -0.63 -8.92 16 14 C 0.10 0.80 8.43 -8.38 -0.07 0.73 16 15 C -0.15 -0.84 8.03 -26.08 -0.21 -1.05 16 16 C 0.12 1.06 4.06 -72.40 -0.29 0.77 16 17 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 18 C 0.11 1.19 5.47 -4.04 -0.02 1.17 16 19 N -0.72 -4.86 5.55 -60.29 -0.33 -5.20 16 20 C 0.49 4.46 7.00 -10.98 -0.08 4.38 16 21 O -0.52 -7.76 16.58 5.56 0.09 -7.67 16 22 C 0.12 0.59 3.93 -68.16 -0.27 0.32 16 23 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 24 C -0.12 -0.44 6.69 -25.10 -0.17 -0.60 16 25 C -0.16 -1.09 6.85 -26.75 -0.18 -1.28 16 26 C 0.53 5.60 8.43 -10.86 -0.09 5.50 16 27 O -0.53 -7.97 18.03 5.55 0.10 -7.87 16 28 N -0.71 -5.61 5.47 -53.88 -0.29 -5.91 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.60 7.95 -51.93 -0.41 0.19 16 35 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 37 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 38 H 0.40 0.98 8.48 -40.82 -0.35 0.64 16 39 H 0.10 0.30 7.89 -51.93 -0.41 -0.11 16 40 H 0.10 0.11 8.14 -51.93 -0.42 -0.32 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.41 2.92 8.96 -40.82 -0.37 2.56 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -41.97 383.01 -8.86 -50.82 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.09 Total: -1.25 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.06 Total: 4.67 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.53 Total: -45.50 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: 0.28 Total: -27.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -41.97 -8.86 -50.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299073296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.237 kcal (2) G-P(sol) polarization free energy of solvation -41.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds