Wall clock time and date at job start Sat Apr 11 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46895 * 239.99946 * 3 2 1 5 5 H 1.48497 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46983 * 120.00224 * 3 2 1 7 7 C 1.38801 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00114 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00002 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47626 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99426 * 359.72108 * 11 10 9 13 13 N 1.34772 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.47062 * 136.06172 * 354.31492 * 13 11 10 15 15 C 1.53753 * 87.89193 * 152.96476 * 14 13 11 16 16 C 1.47070 * 136.05532 * 174.68430 * 13 11 10 17 17 H 1.09001 * 113.46400 * 92.24360 * 16 13 11 18 18 C 1.52999 * 113.46704 * 321.86750 * 16 13 11 19 19 N 1.46498 * 109.47146 * 175.82440 * 18 16 13 20 20 C 1.34774 * 120.00236 * 184.96430 * 19 18 16 21 21 O 1.21277 * 120.00100 * 359.97438 * 20 19 18 22 22 C 1.50708 * 120.00190 * 180.02562 * 20 19 18 23 23 H 1.09004 * 110.21448 * 39.51818 * 22 20 19 24 24 C 1.54483 * 110.24150 * 277.49670 * 22 20 19 25 25 C 1.54621 * 101.76742 * 266.41484 * 24 22 20 26 26 C 1.51281 * 104.19473 * 335.20378 * 25 24 22 27 27 O 1.21285 * 124.94152 * 196.27168 * 26 25 24 28 28 N 1.34420 * 110.11761 * 16.25606 * 26 25 24 29 29 H 0.96998 * 119.99758 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47329 * 59.99644 * 10 9 7 31 31 H 1.09010 * 109.47136 * 299.99879 * 10 9 7 32 32 H 1.08995 * 113.47130 * 267.69995 * 14 13 11 33 33 H 1.09006 * 113.47010 * 38.13648 * 14 13 11 34 34 H 1.09005 * 114.39290 * 272.68247 * 15 14 13 35 35 H 1.08996 * 114.27417 * 139.79169 * 15 14 13 36 36 H 1.09002 * 109.47230 * 295.82661 * 18 16 13 37 37 H 1.08997 * 109.47274 * 55.82670 * 18 16 13 38 38 H 0.97000 * 120.00188 * 4.96466 * 19 18 16 39 39 H 1.08999 * 110.96929 * 24.54047 * 24 22 20 40 40 H 1.09000 * 110.96501 * 148.29650 * 24 22 20 41 41 H 1.09000 * 110.48697 * 216.52319 * 25 24 22 42 42 H 1.09004 * 110.60106 * 93.93606 * 25 24 22 43 43 H 0.96994 * 124.34995 * 180.43350 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5157 -3.8914 -0.0013 11 6 1.9873 -5.3028 -0.0030 12 8 0.7911 -5.5023 0.0007 13 7 2.8441 -6.3431 -0.0035 14 6 4.3012 -6.5149 -0.1038 15 6 4.1448 -7.8215 0.6914 16 6 2.7328 -7.8066 0.0896 17 1 2.6681 -8.2995 -0.8804 18 6 1.6501 -8.2745 1.0642 19 7 1.5467 -9.7350 1.0147 20 6 0.5863 -10.3669 1.7181 21 8 -0.1921 -9.7264 2.3925 22 6 0.4803 -11.8694 1.6677 23 1 1.4740 -12.3174 1.6734 24 6 -0.2988 -12.3082 0.4080 25 6 -1.7411 -12.4233 0.9534 26 6 -1.5588 -12.6748 2.4340 27 8 -2.4183 -13.0980 3.1777 28 7 -0.3055 -12.3615 2.8053 29 1 -0.4850 0.8401 0.0004 30 1 3.1237 -3.7318 0.8891 31 1 3.1251 -3.7310 -0.8909 32 1 4.6511 -6.6673 -1.1247 33 1 4.8663 -5.7478 0.4258 34 1 4.1706 -7.6956 1.7738 35 1 4.7727 -8.6392 0.3377 36 1 1.9121 -7.9629 2.0753 37 1 0.6938 -7.8330 0.7842 38 1 2.1695 -10.2474 0.4757 39 1 -0.2364 -11.5504 -0.3730 40 1 0.0586 -13.2715 0.0442 41 1 -2.2603 -13.2596 0.4854 42 1 -2.2886 -11.4952 0.7888 43 1 0.0359 -12.4498 3.7089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299073296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:33 Heat of formation + Delta-G solvation = -98.740913 kcal Electronic energy + Delta-G solvation = -26441.798382 eV Core-core repulsion = 22420.215167 eV Total energy + Delta-G solvation = -4021.583215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98697 -41.46809 -40.04199 -38.90068 -37.28509 -35.84762 -34.61564 -32.38043 -32.15976 -30.44676 -29.45293 -28.34680 -27.66592 -24.56007 -23.47701 -23.12199 -21.81452 -21.50209 -20.29249 -19.55300 -18.83499 -18.55982 -17.95617 -17.41219 -16.92046 -16.89342 -16.72486 -16.47038 -16.06118 -15.91797 -15.67588 -15.35668 -14.94520 -14.72877 -14.59190 -14.57170 -14.21933 -13.92487 -13.80940 -13.60318 -13.38892 -13.18619 -12.96321 -12.87964 -12.65147 -12.47356 -12.38521 -12.28364 -11.78001 -11.64309 -11.43571 -11.15370 -11.06246 -10.86746 -10.32119 -10.21446 -10.16611 -9.77409 -8.71998 -8.37030 -6.16758 1.16583 1.35450 1.41968 1.42595 1.48317 1.52280 1.55298 1.81040 2.14841 2.25236 2.47864 2.96888 3.19657 3.29316 3.35639 3.46942 3.67476 3.69054 3.77567 3.92907 4.02228 4.05432 4.22459 4.23603 4.42429 4.44082 4.50516 4.62569 4.71092 4.76065 4.77132 4.93450 5.00934 5.02908 5.06117 5.26207 5.38071 5.39316 5.68132 5.88658 6.16629 6.49681 6.61555 7.03450 7.09853 7.11597 7.23120 8.72075 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.002005 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.621889 B =13964.225784 C =14988.054538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.157 6.157 10 C -0.117 4.117 11 C 0.555 3.445 12 O -0.567 6.567 13 N -0.652 5.652 14 C 0.092 3.908 15 C -0.122 4.122 16 C 0.122 3.878 17 H 0.129 0.871 18 C 0.119 3.881 19 N -0.695 5.695 20 C 0.489 3.511 21 O -0.588 6.588 22 C 0.122 3.878 23 H 0.173 0.827 24 C -0.107 4.107 25 C -0.161 4.161 26 C 0.513 3.487 27 O -0.588 6.588 28 N -0.707 5.707 29 H 0.271 0.729 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.144 0.856 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.428 0.572 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.118 -29.741 -3.858 34.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.070 5.930 10 C -0.268 4.268 11 C 0.345 3.655 12 O -0.446 6.446 13 N -0.390 5.390 14 C -0.029 4.029 15 C -0.160 4.160 16 C 0.018 3.982 17 H 0.146 0.854 18 C -0.007 4.007 19 N -0.350 5.350 20 C 0.275 3.725 21 O -0.467 6.467 22 C 0.013 3.987 23 H 0.190 0.810 24 C -0.145 4.145 25 C -0.202 4.202 26 C 0.301 3.699 27 O -0.469 6.469 28 N -0.360 5.360 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.162 0.838 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.267 0.733 39 H 0.126 0.874 40 H 0.159 0.841 41 H 0.144 0.856 42 H 0.108 0.892 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 14.038 -29.501 -3.117 32.818 hybrid contribution 1.156 1.792 0.579 2.210 sum 15.194 -27.709 -2.538 31.703 Atomic orbital electron populations 1.70191 1.08085 1.28738 1.47856 1.26195 0.96001 1.03504 0.93657 0.84963 0.77767 0.75402 0.79609 1.18349 1.20440 1.18614 1.23146 0.95305 0.91769 1.59118 0.89802 1.85664 1.10760 0.99527 1.97049 1.23250 1.03248 0.94026 1.06246 1.19681 0.85176 0.85672 0.75001 1.90710 1.17257 1.85627 1.50967 1.49841 1.10512 1.05750 1.72875 1.23434 0.78478 0.98183 1.02773 1.23600 0.93150 0.98472 1.00754 1.23218 0.95466 0.79781 0.99687 0.85363 1.21278 0.99098 0.81110 0.99192 1.45503 1.33834 1.06251 1.49411 1.21919 0.79852 0.92007 0.78734 1.90806 1.43625 1.69249 1.43011 1.21933 1.00644 0.88008 0.88118 0.81004 1.22754 0.90829 1.06334 0.94536 1.22437 1.01021 1.05484 0.91209 1.21557 0.81499 0.74600 0.92225 1.90725 1.46330 1.48617 1.61204 1.46017 1.12898 1.64315 1.12801 0.91970 0.87897 0.87497 0.86581 0.89703 0.89030 0.83810 0.92974 0.94696 0.73308 0.87430 0.84087 0.85621 0.89183 0.74525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.07 13.22 21.65 0.29 -56.78 16 2 C 0.01 0.64 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.55 -31.56 9.50 67.95 0.65 -30.92 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.16 -8.99 20.57 -56.49 -1.16 -10.15 16 10 C -0.12 -4.77 5.99 71.24 0.43 -4.34 16 11 C 0.56 21.20 7.97 87.66 0.70 21.90 16 12 O -0.57 -27.58 15.47 -3.02 -0.05 -27.62 16 13 N -0.65 -15.60 3.56 -833.27 -2.97 -18.56 16 14 C 0.09 1.04 8.43 83.26 0.70 1.74 16 15 C -0.12 -0.70 8.03 31.01 0.25 -0.45 16 16 C 0.12 1.72 4.06 41.78 0.17 1.89 16 17 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 18 C 0.12 2.52 5.47 86.38 0.47 3.00 16 19 N -0.70 -7.66 5.55 -463.07 -2.57 -10.24 16 20 C 0.49 8.29 7.00 87.66 0.61 8.90 16 21 O -0.59 -18.78 16.58 -3.02 -0.05 -18.83 16 22 C 0.12 0.85 3.93 44.70 0.18 1.02 16 23 H 0.17 -0.68 8.14 -2.39 -0.02 -0.70 16 24 C -0.11 -0.37 6.69 31.65 0.21 -0.16 16 25 C -0.16 -2.11 6.85 30.58 0.21 -1.90 16 26 C 0.51 11.14 8.43 87.90 0.74 11.89 16 27 O -0.59 -18.96 18.03 -3.05 -0.05 -19.01 16 28 N -0.71 -10.57 5.47 -442.95 -2.42 -12.99 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.10 3.87 8.14 -2.40 -0.02 3.85 16 31 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.09 0.73 7.95 -2.38 -0.02 0.72 16 35 H 0.14 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.05 1.32 7.89 -2.39 -0.02 1.30 16 37 H 0.03 1.17 7.15 -2.39 -0.02 1.15 16 38 H 0.43 -0.13 8.48 -92.71 -0.79 -0.92 16 39 H 0.11 0.24 7.89 -2.39 -0.02 0.22 16 40 H 0.14 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.42 5.73 8.96 -92.71 -0.83 4.89 16 Total: -1.00 -106.15 383.01 -1.74 -107.89 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -0.56 Total: 6.79 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 5.78 Total: 13.67 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -7.67 Total: -98.57 kcal Atomic # 8 Polarization: -65.32 SS G_CDS: -0.15 Total: -65.47 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.16 Total: -10.15 kcal Total: -106.15 -1.74 -107.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299073296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.146 kcal (2) G-P(sol) polarization free energy of solvation -106.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds