Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47215 * 269.99931 * 3 2 1 5 5 H 1.48503 * 109.47263 * 30.00384 * 3 2 1 6 6 H 1.48498 * 109.46952 * 150.00277 * 3 2 1 7 7 C 1.38951 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99972 * 359.97438 * 7 2 1 9 9 N 1.37098 * 119.99875 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00053 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99743 * 0.02562 * 10 9 7 12 12 C 1.50692 * 119.99858 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46969 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99908 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.88798 * 325.70160 * 14 13 12 16 16 C 1.55154 * 111.00320 * 89.58203 * 14 13 12 17 17 C 1.54327 * 102.94290 * 153.61398 * 16 14 13 18 18 N 1.47029 * 107.26790 * 337.80696 * 17 16 14 19 19 C 1.34773 * 125.64802 * 178.99157 * 18 17 16 20 20 O 1.21281 * 120.00184 * 179.97438 * 19 18 17 21 21 C 1.50703 * 119.99892 * 359.96874 * 19 18 17 22 22 H 1.08997 * 109.47610 * 345.00160 * 21 19 18 23 23 F 1.39908 * 109.47173 * 105.00703 * 21 19 18 24 24 C 1.53002 * 109.47271 * 225.00438 * 21 19 18 25 25 F 1.39903 * 109.47174 * 60.00027 * 24 21 19 26 26 F 1.39903 * 109.47224 * 180.02562 * 24 21 19 27 27 F 1.39903 * 109.47294 * 300.00017 * 24 21 19 28 28 C 1.47418 * 108.70495 * 358.93814 * 18 17 16 29 29 H 0.97000 * 120.00499 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99620 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47390 * 60.00632 * 12 10 9 32 32 H 1.09000 * 109.47806 * 300.00108 * 12 10 9 33 33 H 1.00904 * 110.99767 * 303.95594 * 13 12 10 34 34 H 1.09004 * 110.72212 * 271.97421 * 16 14 13 35 35 H 1.09001 * 110.72124 * 35.25540 * 16 14 13 36 36 H 1.08993 * 109.88730 * 97.22288 * 17 16 14 37 37 H 1.08996 * 109.88624 * 218.24012 * 17 16 14 38 38 H 1.08995 * 110.37279 * 265.29528 * 28 18 17 39 39 H 1.08997 * 110.36990 * 142.96726 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4208 -0.0009 12 6 5.5608 -2.3703 0.0000 13 7 6.0505 -3.7553 -0.0006 14 6 7.5190 -3.7944 0.0000 15 1 7.9301 -2.9634 -0.5732 16 6 8.0746 -3.7995 1.4486 17 6 9.4381 -4.5055 1.2934 18 7 9.3774 -5.3060 0.0616 19 6 10.3788 -6.0578 -0.4367 20 8 10.2162 -6.6799 -1.4650 21 6 11.7006 -6.1254 0.2839 22 1 11.7575 -5.3194 1.0154 23 9 11.8130 -7.3573 0.9376 24 6 12.8403 -5.9785 -0.7263 25 9 12.7281 -4.7467 -1.3801 26 9 14.0675 -6.0418 -0.0575 27 9 12.7676 -7.0131 -1.6653 28 6 8.0394 -5.1509 -0.5375 29 1 -0.4851 0.8400 0.0004 30 1 3.8648 -0.3631 0.0004 31 1 5.9241 -1.8565 0.8900 32 1 5.9242 -1.8564 -0.8899 33 1 5.6750 -4.2720 0.7805 34 1 8.2070 -2.7813 1.8145 35 1 7.4200 -4.3663 2.1107 36 1 10.2328 -3.7638 1.2147 37 1 9.6197 -5.1536 2.1507 38 1 7.3845 -5.9617 -0.2184 39 1 8.1111 -5.1258 -1.6248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317057764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = -246.568746 kcal Electronic energy + Delta-G solvation = -29600.761136 eV Core-core repulsion = 24464.697709 eV Total energy + Delta-G solvation = -5136.063427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.84898 -49.00071 -48.23603 -48.05543 -40.64981 -38.79411 -38.03308 -35.13114 -33.96138 -32.09222 -31.71739 -30.80255 -29.25842 -26.64173 -25.02083 -23.74479 -23.48369 -21.31979 -20.58188 -19.50372 -19.47841 -19.24345 -18.79135 -18.46143 -17.96770 -16.99800 -16.81288 -16.08846 -15.99704 -15.56697 -15.15228 -15.07322 -14.93227 -14.90061 -14.63466 -14.60389 -14.31226 -14.27714 -14.21560 -14.06267 -13.89820 -13.54865 -13.15283 -13.08710 -13.07827 -12.67908 -12.37441 -12.22329 -12.13271 -11.81052 -11.63220 -11.25228 -11.20122 -10.65606 -10.61255 -10.03499 -9.64084 -9.31012 -8.72197 -8.34344 -8.24367 -6.36770 -3.88759 1.36697 1.68043 2.11395 2.82670 2.96210 3.01935 3.10133 3.10846 3.24142 3.36720 3.64204 3.75914 3.81237 4.04354 4.09820 4.18475 4.27173 4.46294 4.73418 4.79846 4.92347 4.96451 5.15326 5.31759 5.42140 5.46341 5.50143 5.61043 5.66479 5.69385 5.84186 6.67433 6.86515 7.21058 7.34397 7.51111 8.07761 8.52546 8.88586 9.35556 9.74435 10.76153 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.029301 B = 0.001922 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.364255 B =14561.730840 C =14846.751473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.042 3.958 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.447 3.553 11 O -0.564 6.564 12 C 0.049 3.951 13 N -0.655 5.655 14 C 0.079 3.921 15 H 0.098 0.902 16 C -0.166 4.166 17 C 0.090 3.910 18 N -0.602 5.602 19 C 0.509 3.491 20 O -0.491 6.491 21 C 0.041 3.959 22 H 0.144 0.856 23 F -0.151 7.151 24 C 0.448 3.552 25 F -0.166 7.166 26 F -0.168 7.168 27 F -0.154 7.154 28 C 0.115 3.885 29 H 0.274 0.726 30 H 0.371 0.629 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.357 0.643 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.333 -5.728 4.607 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.228 5.228 10 C 0.233 3.767 11 O -0.446 6.446 12 C -0.083 4.083 13 N -0.287 5.287 14 C -0.034 4.034 15 H 0.116 0.884 16 C -0.205 4.205 17 C -0.033 4.033 18 N -0.337 5.337 19 C 0.292 3.708 20 O -0.364 6.364 21 C 0.000 4.000 22 H 0.162 0.838 23 F -0.132 7.132 24 C 0.392 3.608 25 F -0.147 7.147 26 F -0.149 7.149 27 F -0.135 7.135 28 C -0.007 4.007 29 H 0.085 0.915 30 H 0.203 0.797 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.178 0.822 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 27.610 -6.810 3.314 28.630 hybrid contribution 1.029 1.699 1.027 2.236 sum 28.638 -5.110 4.341 29.413 Atomic orbital electron populations 1.69619 1.05662 1.27582 1.49035 1.25057 0.95509 0.98030 0.97578 0.86660 0.79681 0.84003 0.78934 1.19560 1.20169 1.19558 1.19429 0.79179 0.96663 1.48245 0.86241 1.42199 1.07579 1.06131 1.66874 1.19643 0.88070 0.84635 0.84351 1.90580 1.69362 1.30900 1.53783 1.21739 0.95300 0.89769 1.01517 1.59878 1.03872 1.13251 1.51689 1.22758 0.89106 0.97295 0.94195 0.88390 1.23474 0.95675 1.01860 0.99517 1.22246 0.99723 0.94677 0.86639 1.48362 1.13623 1.45840 1.25839 1.19559 0.84324 0.81103 0.85829 1.90885 1.80902 1.42056 1.22584 1.22750 0.93599 0.88156 0.95488 0.83808 1.93034 1.96405 1.42804 1.80918 1.20275 0.83184 0.75344 0.82001 1.93262 1.95925 1.43239 1.82302 1.93261 1.45562 1.96048 1.80035 1.93325 1.96117 1.57791 1.66233 1.22334 0.80639 0.97968 0.99741 0.91540 0.79675 0.93406 0.89215 0.82234 0.89217 0.89528 0.90525 0.90401 0.89709 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.14 13.96 55.50 0.77 -24.36 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 18.64 27.74 -169.99 -4.71 13.93 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.11 6.52 56.52 0.37 -4.75 16 7 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 8 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 9 N -0.59 -13.28 5.09 -10.97 -0.06 -13.34 16 10 C 0.45 9.45 7.82 -10.99 -0.09 9.36 16 11 O -0.56 -14.41 15.78 5.55 0.09 -14.33 16 12 C 0.05 0.70 6.05 -4.98 -0.03 0.67 16 13 N -0.65 -8.41 6.02 -105.72 -0.64 -9.04 16 14 C 0.08 0.69 3.34 -65.56 -0.22 0.47 16 15 H 0.10 0.80 7.87 -51.93 -0.41 0.40 16 16 C -0.17 -1.00 6.56 -24.90 -0.16 -1.16 16 17 C 0.09 0.45 5.95 -3.06 -0.02 0.43 16 18 N -0.60 -5.00 3.33 -170.52 -0.57 -5.57 16 19 C 0.51 5.11 6.93 -10.99 -0.08 5.03 16 20 O -0.49 -6.89 15.86 5.56 0.09 -6.80 16 21 C 0.04 0.30 3.55 -27.88 -0.10 0.20 16 22 H 0.14 0.43 6.68 -51.93 -0.35 0.08 16 23 F -0.15 -1.30 17.03 2.25 0.04 -1.26 16 24 C 0.45 3.81 2.86 37.16 0.11 3.92 16 25 F -0.17 -1.43 17.03 2.25 0.04 -1.39 16 26 F -0.17 -1.32 17.30 2.25 0.04 -1.28 16 27 F -0.15 -1.71 15.95 2.25 0.04 -1.68 16 28 C 0.12 1.12 6.60 -2.53 -0.02 1.10 16 29 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.37 7.24 5.76 -40.82 -0.24 7.01 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 33 H 0.36 4.73 7.95 -39.29 -0.31 4.42 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.55 7.78 -51.93 -0.40 0.14 16 36 H 0.08 0.22 7.83 -51.93 -0.41 -0.19 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -34.29 349.37 -4.65 -38.95 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.20 Total: 8.42 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -0.85 Total: 12.48 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.48 Total: -52.31 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: 0.18 Total: -21.13 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.15 Total: -5.60 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.71 Total: 13.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.29 -4.65 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317057764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.619 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds