Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47215 * 269.99931 * 3 2 1 5 5 H 1.48503 * 109.47263 * 30.00384 * 3 2 1 6 6 H 1.48498 * 109.46952 * 150.00277 * 3 2 1 7 7 C 1.38951 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99972 * 359.97438 * 7 2 1 9 9 N 1.37098 * 119.99875 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00053 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99743 * 0.02562 * 10 9 7 12 12 C 1.50692 * 119.99858 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46969 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99908 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.88798 * 325.70160 * 14 13 12 16 16 C 1.55154 * 111.00320 * 89.58203 * 14 13 12 17 17 C 1.54327 * 102.94290 * 153.61398 * 16 14 13 18 18 N 1.47029 * 107.26790 * 337.80696 * 17 16 14 19 19 C 1.34773 * 125.64802 * 178.99157 * 18 17 16 20 20 O 1.21281 * 120.00184 * 179.97438 * 19 18 17 21 21 C 1.50703 * 119.99892 * 359.96874 * 19 18 17 22 22 H 1.08997 * 109.47610 * 345.00160 * 21 19 18 23 23 F 1.39908 * 109.47173 * 105.00703 * 21 19 18 24 24 C 1.53002 * 109.47271 * 225.00438 * 21 19 18 25 25 F 1.39903 * 109.47174 * 60.00027 * 24 21 19 26 26 F 1.39903 * 109.47224 * 180.02562 * 24 21 19 27 27 F 1.39903 * 109.47294 * 300.00017 * 24 21 19 28 28 C 1.47418 * 108.70495 * 358.93814 * 18 17 16 29 29 H 0.97000 * 120.00499 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99620 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47390 * 60.00632 * 12 10 9 32 32 H 1.09000 * 109.47806 * 300.00108 * 12 10 9 33 33 H 1.00904 * 110.99767 * 303.95594 * 13 12 10 34 34 H 1.09004 * 110.72212 * 271.97421 * 16 14 13 35 35 H 1.09001 * 110.72124 * 35.25540 * 16 14 13 36 36 H 1.08993 * 109.88730 * 97.22288 * 17 16 14 37 37 H 1.08996 * 109.88624 * 218.24012 * 17 16 14 38 38 H 1.08995 * 110.37279 * 265.29528 * 28 18 17 39 39 H 1.08997 * 110.36990 * 142.96726 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4208 -0.0009 12 6 5.5608 -2.3703 0.0000 13 7 6.0505 -3.7553 -0.0006 14 6 7.5190 -3.7944 0.0000 15 1 7.9301 -2.9634 -0.5732 16 6 8.0746 -3.7995 1.4486 17 6 9.4381 -4.5055 1.2934 18 7 9.3774 -5.3060 0.0616 19 6 10.3788 -6.0578 -0.4367 20 8 10.2162 -6.6799 -1.4650 21 6 11.7006 -6.1254 0.2839 22 1 11.7575 -5.3194 1.0154 23 9 11.8130 -7.3573 0.9376 24 6 12.8403 -5.9785 -0.7263 25 9 12.7281 -4.7467 -1.3801 26 9 14.0675 -6.0418 -0.0575 27 9 12.7676 -7.0131 -1.6653 28 6 8.0394 -5.1509 -0.5375 29 1 -0.4851 0.8400 0.0004 30 1 3.8648 -0.3631 0.0004 31 1 5.9241 -1.8565 0.8900 32 1 5.9242 -1.8564 -0.8899 33 1 5.6750 -4.2720 0.7805 34 1 8.2070 -2.7813 1.8145 35 1 7.4200 -4.3663 2.1107 36 1 10.2328 -3.7638 1.2147 37 1 9.6197 -5.1536 2.1507 38 1 7.3845 -5.9617 -0.2184 39 1 8.1111 -5.1258 -1.6248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317057764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = -274.530618 kcal Electronic energy + Delta-G solvation = -29601.973654 eV Core-core repulsion = 24464.697709 eV Total energy + Delta-G solvation = -5137.275945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.50491 -49.61994 -48.88319 -48.74950 -41.36115 -40.29053 -39.01815 -36.28931 -35.67938 -33.73515 -32.79585 -31.45171 -30.02201 -28.00107 -26.03409 -25.04845 -24.08343 -22.00030 -21.33625 -21.17672 -20.28567 -20.12292 -19.88857 -19.41064 -18.64896 -17.85673 -17.65277 -17.24640 -16.97143 -16.70117 -16.41461 -15.97526 -15.71496 -15.64150 -15.61144 -15.27634 -15.20836 -15.02341 -15.00003 -14.96310 -14.72819 -14.71879 -14.47922 -14.13006 -13.95747 -13.85449 -13.75603 -13.16069 -12.99291 -12.84387 -12.60336 -12.40912 -12.37270 -11.95628 -11.77004 -11.49257 -11.37863 -10.43734 -10.23112 -9.96247 -9.31414 -8.39374 -6.00666 0.69714 1.00074 1.31768 1.38685 1.45871 1.47393 1.98632 2.20157 2.25447 2.51017 2.61113 2.74810 2.87587 3.17242 3.24925 3.29503 3.54340 3.63447 3.74986 4.01163 4.17376 4.23927 4.29431 4.48922 4.56475 4.63136 4.75615 4.82648 4.86251 5.06142 5.11424 5.54493 5.91291 6.01637 6.06911 6.34994 6.52144 6.61491 6.90509 7.42212 7.99434 8.78293 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.029301 B = 0.001922 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.364255 B =14561.730840 C =14846.751473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.019 4.019 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.225 1.225 7 C -0.328 4.328 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.617 6.617 12 C 0.066 3.934 13 N -0.680 5.680 14 C 0.084 3.916 15 H 0.114 0.886 16 C -0.157 4.157 17 C 0.083 3.917 18 N -0.595 5.595 19 C 0.502 3.498 20 O -0.545 6.545 21 C 0.052 3.948 22 H 0.197 0.803 23 F -0.159 7.159 24 C 0.445 3.555 25 F -0.166 7.166 26 F -0.163 7.163 27 F -0.175 7.175 28 C 0.113 3.887 29 H 0.278 0.722 30 H 0.391 0.609 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.351 0.649 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.160 -2.833 6.304 32.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.217 4.217 3 Si 0.787 3.213 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.148 1.148 7 C -0.458 4.458 8 H 0.071 0.929 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.502 6.502 12 C -0.066 4.066 13 N -0.312 5.312 14 C -0.027 4.027 15 H 0.132 0.868 16 C -0.196 4.196 17 C -0.038 4.038 18 N -0.328 5.328 19 C 0.286 3.714 20 O -0.422 6.422 21 C 0.011 3.989 22 H 0.214 0.786 23 F -0.139 7.139 24 C 0.389 3.611 25 F -0.148 7.148 26 F -0.144 7.144 27 F -0.156 7.156 28 C -0.010 4.010 29 H 0.088 0.912 30 H 0.227 0.773 31 H 0.108 0.892 32 H 0.134 0.866 33 H 0.171 0.829 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 31.483 -3.904 5.048 32.123 hybrid contribution -0.221 0.635 0.485 0.829 sum 31.262 -3.269 5.533 31.916 Atomic orbital electron populations 1.69814 1.08280 1.29246 1.50368 1.26175 0.96490 1.02921 0.96098 0.85336 0.79662 0.76457 0.79852 1.18419 1.20302 1.14755 1.18991 0.81676 0.94808 1.50300 0.92876 1.42022 1.05695 1.07734 1.67787 1.21089 0.91248 0.83203 0.81027 1.90562 1.71548 1.32909 1.55156 1.21646 0.89069 0.91236 1.04618 1.59784 1.06608 1.12657 1.52113 1.22724 0.86555 0.96797 0.96649 0.86829 1.23433 0.95779 1.03447 0.96965 1.22615 1.00277 0.95405 0.85550 1.48420 1.12480 1.45327 1.26586 1.20068 0.85436 0.80520 0.85423 1.90861 1.82034 1.44289 1.25038 1.22870 0.91027 0.89223 0.95740 0.78643 1.93021 1.96251 1.43755 1.80873 1.20496 0.83876 0.74796 0.81920 1.93257 1.95968 1.43092 1.82435 1.93271 1.45350 1.95993 1.79770 1.93282 1.96261 1.58854 1.67253 1.22199 0.81549 0.98487 0.98785 0.91212 0.77331 0.89241 0.86615 0.82905 0.86712 0.90020 0.86957 0.88275 0.91289 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.67 13.96 21.66 0.30 -55.36 16 2 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 3 Si 0.97 37.05 27.74 68.60 1.90 38.95 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.22 -6.90 6.52 99.48 0.65 -6.25 16 7 C -0.33 -18.69 10.16 84.04 0.85 -17.84 16 8 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 9 N -0.59 -26.15 5.09 -307.00 -1.56 -27.71 16 10 C 0.45 18.58 7.82 87.65 0.69 19.26 16 11 O -0.62 -32.71 15.78 -3.05 -0.05 -32.75 16 12 C 0.07 1.64 6.05 85.55 0.52 2.16 16 13 N -0.68 -16.14 6.02 -488.40 -2.94 -19.07 16 14 C 0.08 1.22 3.34 46.31 0.15 1.37 16 15 H 0.11 1.35 7.87 -2.39 -0.02 1.33 16 16 C -0.16 -1.16 6.56 31.78 0.21 -0.95 16 17 C 0.08 0.41 5.95 86.73 0.52 0.93 16 18 N -0.60 -8.45 3.33 -811.80 -2.70 -11.15 16 19 C 0.50 9.34 6.93 87.66 0.61 9.95 16 20 O -0.55 -15.60 15.86 -3.03 -0.05 -15.65 16 21 C 0.05 0.61 3.55 29.85 0.11 0.71 16 22 H 0.20 0.15 6.68 -2.39 -0.02 0.13 16 23 F -0.16 -2.39 17.03 44.97 0.77 -1.63 16 24 C 0.44 6.82 2.86 71.98 0.21 7.03 16 25 F -0.17 -2.53 17.03 44.97 0.77 -1.77 16 26 F -0.16 -2.21 17.30 44.97 0.78 -1.43 16 27 F -0.18 -3.91 15.95 44.97 0.72 -3.19 16 28 C 0.11 2.09 6.60 86.86 0.57 2.66 16 29 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.39 13.92 5.76 -92.71 -0.53 13.38 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 2.36 8.09 -2.39 -0.02 2.34 16 33 H 0.35 8.97 7.95 -89.69 -0.71 8.26 16 34 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 0.74 7.78 -2.39 -0.02 0.72 16 36 H 0.11 -0.13 7.83 -2.39 -0.02 -0.15 16 37 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.59 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -84.64 349.37 2.66 -81.98 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.16 Total: 24.04 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 4.90 Total: 24.75 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -6.90 Total: -113.30 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -0.10 Total: -48.40 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 3.03 Total: -8.02 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 1.90 Total: 38.95 kcal Total: -84.64 2.66 -81.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317057764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.553 kcal (2) G-P(sol) polarization free energy of solvation -84.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds